Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:17:56 (253379): wrapper (7.7.26015): starting
13:17:56 (253379): wrapper: running run_atlas (--nthreads 11)
[2026-04-10 13:17:56] Arguments: --nthreads 11
[2026-04-10 13:17:56] Threads: 11
[2026-04-10 13:17:56] Checking for CVMFS
[2026-04-10 13:17:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 13:17:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 13:17:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 13:17:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 13:17:58] 2.13.3.0 7314 224679 251748 158310 1 371 29020313 40960001 35861 16776704 0 2844569275 99.760 1867510760 46032 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-10 13:17:58] CVMFS is ok
[2026-04-10 13:17:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 13:17:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 13:17:58] Further information can be found at the LHC@home message board.
[2026-04-10 13:17:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 13:17:58] Checking for apptainer binary...
[2026-04-10 13:17:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 13:17:58] Running /usr/bin/apptainer --version
[2026-04-10 13:17:58] apptainer version 1.4.5-2.el9
[2026-04-10 13:17:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 13:17:59] c8-16-1.aglt2.org
[2026-04-10 13:17:59] apptainer works
[2026-04-10 13:17:59] Set ATHENA_PROC_NUMBER=11
[2026-04-10 13:17:59] Set ATHENA_CORE_NUMBER=11
[2026-04-10 13:17:59] Starting ATLAS job with PandaID=7085528995
[2026-04-10 13:17:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 14:30:39]  *** The last 200 lines of the pilot log: ***
[2026-04-10 14:30:39]  filetype=log
[2026-04-10 14:30:39]  guid=71809f6c-06d7-42d9-bf74-9e2dc8ae431a
[2026-04-10 14:30:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-10 14:30:39]  is_altstaged=None
[2026-04-10 14:30:39]  is_tar=False
[2026-04-10 14:30:39]  lfn=log.49263200._036977.job.log.tgz.1
[2026-04-10 14:30:39]  mtime=0
[2026-04-10 14:30:39]  protocol_id=None
[2026-04-10 14:30:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-10 14:30:39]  replicas=None
[2026-04-10 14:30:39]  scope=mc23_13p6TeV
[2026-04-10 14:30:39]  status=None
[2026-04-10 14:30:39]  status_code=0
[2026-04-10 14:30:39]  storage_token=
[2026-04-10 14:30:39]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-7085528995/log.49263200._036977.job.log.tgz.1
[2026-04-10 14:30:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/22/log.49263200._036977.job.log.tgz.1
[2026-04-10 14:30:39]  workdir=None
[2026-04-10 14:30:39] ]
[2026-04-10 14:30:39] 2026-04-10 18:29:44,483 | INFO     | transferring file log.49263200._036977.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-7085528995/log.49263200._036977.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-04-10 14:30:39] 2026-04-10 18:29:44,483 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-7085528995/log.49263200._036977.job.log.tgz.1 /tmp/boinchome/slots/2/log.49263200._036977.job
[2026-04-10 14:30:39] 2026-04-10 18:29:44,598 | INFO     | adding to output.list: log.49263200._036977.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/22/log.49263200._036977.job.log.tg
[2026-04-10 14:30:39] 2026-04-10 18:29:44,599 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-10 14:30:39] 2026-04-10 18:29:44,599 | INFO     | summary of transferred files:
[2026-04-10 14:30:39] 2026-04-10 18:29:44,599 | INFO     |  -- lfn=log.49263200._036977.job.log.tgz.1, status_code=0, status=transferred
[2026-04-10 14:30:39] 2026-04-10 18:29:44,599 | INFO     | stage-out finished correctly
[2026-04-10 14:30:39] 2026-04-10 18:29:46,669 | INFO     | PID=278297 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 14:30:39] 2026-04-10 18:29:46,669 | INFO     | .. there are 58 such processes running
[2026-04-10 14:30:39] 2026-04-10 18:29:46,722 | INFO     | number of running child processes to parent process 300130: 1
[2026-04-10 14:30:39] 2026-04-10 18:29:46,722 | INFO     | maximum number of monitored processes: 6
[2026-04-10 14:30:39] 2026-04-10 18:29:47,158 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-10 14:30:39] 2026-04-10 18:29:47,390 | INFO     | job 7085528995 has state=finished
[2026-04-10 14:30:39] 2026-04-10 18:29:47,390 | INFO     | preparing for final server update for job 7085528995 in state='finished'
[2026-04-10 14:30:39] 2026-04-10 18:29:47,390 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7085528995/jobReport.json
[2026-04-10 14:30:39] 2026-04-10 18:29:47,392 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-04-10 14:30:39] 2026-04-10 18:29:47,392 | INFO     | this job has now completed (state=finished)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,392 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,392 | INFO     | log transfer has been attempted: DONE
[2026-04-10 14:30:39] 2026-04-10 18:29:47,392 | INFO     | job 7085528995 has finished - writing final server update
[2026-04-10 14:30:39] 2026-04-10 18:29:47,392 | INFO     | total number of processed events: 400 (read)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,454 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7085528995/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,455 | INFO     | extracted standard info from prmon json
[2026-04-10 14:30:39] 2026-04-10 18:29:47,455 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 14:30:39] 2026-04-10 18:29:47,455 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 14:30:39] 2026-04-10 18:29:47,455 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 14:30:39] 2026-04-10 18:29:47,456 | INFO     | fitting pss+swap vs Time
[2026-04-10 14:30:39] 2026-04-10 18:29:47,456 | INFO     | sum of square deviations: 73870429.5483871
[2026-04-10 14:30:39] 2026-04-10 18:29:47,456 | INFO     | sum of deviations: -3373901833.2903233
[2026-04-10 14:30:39] 2026-04-10 18:29:47,456 | INFO     | mean x (centered): 0.0
[2026-04-10 14:30:39] 2026-04-10 18:29:47,456 | INFO     | mean y: 2722609.935483871
[2026-04-10 14:30:39] 2026-04-10 18:29:47,456 | INFO     | intersect: 2722609.935483871
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | chi2: 0.011928806925376791
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | current memory leak: -45.67 B/s (using 62 data points, chi2=0.01)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | ..............................
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . Timing measurements:
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . get job = 0 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . initial setup = 21 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . payload setup = 35 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . stage-in = 0 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . payload execution = 4164 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . stage-out = 1 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | . log creation = 0 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,457 | INFO     | ..............................
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | 
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | job summary report
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | --------------------------------------------------
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | PanDA job id: 7085528995
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | task id: 49263200
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | errors: (none)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | pilot state: finished 
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | transexitcode: 0
[2026-04-10 14:30:39] 2026-04-10 18:29:47,607 | INFO     | exeerrorcode: 0
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | exeerrordiag: 
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | exitcode: 0
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | exitmsg: OK
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | cpuconsumptiontime: 22290 s
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | nevents: 400
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | neventsw: 0
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | pid: 300130
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | pgrp: 300130
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | corecount: 11
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | event service: False
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | sizes: {0: 2279667, 1: 2279922, 2: 2281524, 12: 2281524, 4204: 2307400, 4205: 2307399, 4208: 2316581, 4210: 2316637, 4211: 2316831}
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | --------------------------------------------------
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | 
[2026-04-10 14:30:39] 2026-04-10 18:29:47,608 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-10 14:30:39] 2026-04-10 18:29:47,692 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,692 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,692 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,692 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | job 7085528995 has completed (purged errors)
[2026-04-10 14:30:39] 2026-04-10 18:29:47,693 | INFO     | overall cleanup function is called
[2026-04-10 14:30:39] 2026-04-10 18:29:48,714 | INFO     | --- collectZombieJob: --- 10, [300130]
[2026-04-10 14:30:39] 2026-04-10 18:29:48,714 | INFO     | zombie collector waiting for pid 300130
[2026-04-10 14:30:39] 2026-04-10 18:29:48,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 14:30:39] 2026-04-10 18:29:48,714 | INFO     | collected zombie processes
[2026-04-10 14:30:39] 2026-04-10 18:29:48,714 | INFO     | will attempt to kill all subprocesses of pid=300130
[2026-04-10 14:30:39] 2026-04-10 18:29:50,500 | INFO     | process IDs to be killed: [300130] (in reverse order)
[2026-04-10 14:30:39] 2026-04-10 18:29:50,900 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 14:30:39] 2026-04-10 18:29:50,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 14:30:39] 2026-04-10 18:29:50,964 | INFO     | did not find any defunct processes belonging to 300130
[2026-04-10 14:30:39] 2026-04-10 18:29:51,025 | INFO     | did not find any defunct processes belonging to 300130
[2026-04-10 14:30:39] 2026-04-10 18:29:51,025 | INFO     | Ready for new job
[2026-04-10 14:30:39] 2026-04-10 18:29:51,027 | INFO     | **************************************
[2026-04-10 14:30:39] 2026-04-10 18:29:51,027 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 14:30:39] 2026-04-10 18:29:51,027 | INFO     | **************************************
[2026-04-10 14:30:39] 2026-04-10 18:29:51,027 | INFO     | 
[2026-04-10 14:30:39] 2026-04-10 18:29:51,032 | INFO     | architecture information:
[2026-04-10 14:30:39] 2026-04-10 18:29:51,036 | INFO     | executing command: cat /etc/os-release
[2026-04-10 14:30:39] 2026-04-10 18:29:51,139 | INFO     | cat /etc/os-release:
[2026-04-10 14:30:39] NAME="CentOS Linux"
[2026-04-10 14:30:39] VERSION="7 (Core)"
[2026-04-10 14:30:39] ID="centos"
[2026-04-10 14:30:39] ID_LIKE="rhel fedora"
[2026-04-10 14:30:39] VERSION_ID="7"
[2026-04-10 14:30:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 14:30:39] ANSI_COLOR="0;31"
[2026-04-10 14:30:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 14:30:39] HOME_URL="https://www.centos.org/"
[2026-04-10 14:30:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 14:30:39] 
[2026-04-10 14:30:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 14:30:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 14:30:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 14:30:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 14:30:39] 
[2026-04-10 14:30:39] 2026-04-10 18:29:51,139 | INFO     | **************************************
[2026-04-10 14:30:39] 2026-04-10 18:29:51,642 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-10 14:30:39] 2026-04-10 18:29:51,734 | INFO     | sufficient remaining disk space (170325442560 B)
[2026-04-10 14:30:39] 2026-04-10 18:29:51,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 14:30:39] 2026-04-10 18:29:51,735 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 14:30:39] 2026-04-10 18:29:51,735 | INFO     | update_server=False
[2026-04-10 14:30:39] 2026-04-10 18:29:51,735 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 14:30:39] 2026-04-10 18:29:51,789 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-10 14:30:39] 2026-04-10 18:29:51,789 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-10 14:30:39] 2026-04-10 18:29:51,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 14:30:39] 2026-04-10 18:29:51,789 | INFO     | will abort loop
[2026-04-10 14:30:39] 2026-04-10 18:29:52,555 | INFO     | all data control threads have been joined
[2026-04-10 14:30:39] 2026-04-10 18:29:52,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 14:30:39] 2026-04-10 18:29:52,735 | INFO     | all job control threads have been joined
[2026-04-10 14:30:39] 2026-04-10 18:29:52,743 | INFO     | [job] retrieve thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:52,795 | INFO     | [job] job monitor thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:52,856 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:52,861 | INFO     | all payload control threads have been joined
[2026-04-10 14:30:39] 2026-04-10 18:29:52,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 14:30:39] 2026-04-10 18:29:53,198 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,213 | INFO     | [job] validate thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 14:30:39] 2026-04-10 18:29:53,469 | INFO     | [payload] failed_post thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,561 | INFO     | [data] control thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,579 | INFO     | [job] queue monitor thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,741 | INFO     | [job] control thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,842 | INFO     | [payload] validate_post thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,867 | INFO     | [payload] control thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:53,936 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:54,002 | INFO     | [data] copytool_in thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:54,909 | INFO     | [data] copytool_out thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:29:57,398 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:30:02,661 | INFO     | job.realtimelogging is not enabled
[2026-04-10 14:30:39] 2026-04-10 18:30:03,668 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 14:30:39] 2026-04-10 18:30:21,650 | INFO     | PID=278297 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-10 14:30:39] 2026-04-10 18:30:21,650 | INFO     | .. there are 58 such processes running
[2026-04-10 14:30:39] 2026-04-10 18:30:21,650 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 14:30:39] 2026-04-10 18:30:21,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 14:30:39] 2026-04-10 18:30:21,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 14:30:39] 2026-04-10 18:30:31,181 | INFO     | [monitor] cgroup control has ended
[2026-04-10 14:30:39] 2026-04-10 18:30:32,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140593519417152)>', '<ExcThread(monitor, started 140593170724608)>']
[2026-04-10 14:30:39] 2026-04-10 18:30:32,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 14:30:39] 2026-04-10 18:30:32,724 | INFO     | [monitor] control thread has ended
[2026-04-10 14:30:39] 2026-04-10 18:30:37,151 | INFO     | all workflow threads have been joined
[2026-04-10 14:30:39] 2026-04-10 18:30:37,151 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 14:30:39] 2026-04-10 18:30:37,151 | INFO     | traces error code: 0
[2026-04-10 14:30:39] 2026-04-10 18:30:37,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 14:30:39] 2026-04-10 18:30:37,496 [wrapper] ==== pilot stdout END ====
[2026-04-10 14:30:39] 2026-04-10 18:30:37,571 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 14:30:39] 2026-04-10 18:30:37,596 [wrapper] pilotpid: 278297
[2026-04-10 14:30:39] 2026-04-10 18:30:37,609 [wrapper] Pilot exit status: 0
[2026-04-10 14:30:39] 2026-04-10 18:30:37,722 [wrapper] pandaids: 7085528995
[2026-04-10 14:30:39] 2026-04-10 18:30:38,382 [wrapper] cleanup supervisor_pilot  977057 278298
[2026-04-10 14:30:39] 2026-04-10 18:30:38,408 [wrapper] Test setup, not cleaning
[2026-04-10 14:30:39] 2026-04-10 18:30:38,426 [wrapper] apfmon messages muted
[2026-04-10 14:30:39] 2026-04-10 18:30:38,445 [wrapper] ==== wrapper stdout END ====
[2026-04-10 14:30:39] 2026-04-10 18:30:38,471 [wrapper] ==== wrapper stderr END ====
[2026-04-10 14:30:39]  *** Error codes and diagnostics ***
[2026-04-10 14:30:39]     "exeErrorCode": 0,
[2026-04-10 14:30:39]     "pilotErrorCode": 0,
[2026-04-10 14:30:39]  *** Listing of results directory ***
[2026-04-10 14:30:39] total 411120
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas    644190 Apr 10 11:52 pilot3.tar.gz
[2026-04-10 14:30:39] -rwx------. 1 boincer umatlas     36322 Apr 10 11:53 runpilot2-wrapper.sh
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas      5094 Apr 10 11:53 queuedata.json
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas       100 Apr 10 13:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 14:30:39] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 10 13:17 run_atlas
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas       105 Apr 10 13:17 job.xml
[2026-04-10 14:30:39] -rw-r--r--. 2 boincer umatlas 224587924 Apr 10 13:17 EVNT.49263198._000783.pool.root.1
[2026-04-10 14:30:39] -rw-r--r--. 2 boincer umatlas     15665 Apr 10 13:17 start_atlas.sh
[2026-04-10 14:30:39] drwxrwx--x. 2 boincer umatlas      4096 Apr 10 13:17 shared
[2026-04-10 14:30:39] -rw-r--r--. 2 boincer umatlas    656935 Apr 10 13:17 input.tar.gz
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas         0 Apr 10 13:17 boinc_lockfile
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas      2575 Apr 10 13:17 pandaJob.out
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas        57 Apr 10 13:17 setup.sh.local
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas    997884 Apr 10 13:19 agis_schedconf.cvmfs.json
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas   1511579 Apr 10 13:19 agis_ddmendpoints.agis.ALL.json
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas       431 Apr 10 13:19 workernode_map.json
[2026-04-10 14:30:39] drwx------. 5 boincer umatlas      4096 Apr 10 13:19 pilot3
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas 190861007 Apr 10 14:28 HITS.49263200._036977.pool.root.1
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas       487 Apr 10 14:29 boinc_task_state.xml
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas      7089 Apr 10 14:29 init_data.xml
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas        95 Apr 10 14:29 pilot_heartbeat.json
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas      1049 Apr 10 14:29 memory_monitor_summary.json
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas    355632 Apr 10 14:29 log.49263200._036977.job.log.tgz.1
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas      6358 Apr 10 14:29 heartbeat_new.json
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas      6249 Apr 10 14:29 heartbeat.json
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas      8192 Apr 10 14:30 boinc_mmap_file
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas        27 Apr 10 14:30 wrapper_checkpoint.txt
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas      5077 Apr 10 14:30 pilotlog.txt
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas    383128 Apr 10 14:30 log.49263200._036977.job.log.1
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas       357 Apr 10 14:30 output.list
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas       410 Apr 10 14:30 runtime_log
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas    757760 Apr 10 14:30 result.tar.gz
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas      8960 Apr 10 14:30 runtime_log.err
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas       651 Apr 10 14:30 1cf8a617f0b8.diag
[2026-04-10 14:30:39] -rw-r--r--. 1 boincer umatlas     21279 Apr 10 14:30 stderr.txt
[2026-04-10 14:30:39] HITS file was successfully produced:
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas 190861007 Apr 10 14:28 shared/HITS.pool.root.1
[2026-04-10 14:30:39]  *** Contents of shared directory: ***
[2026-04-10 14:30:39] total 407120
[2026-04-10 14:30:39] -rw-r--r--. 2 boincer umatlas 224587924 Apr 10 13:17 ATLAS.root_0
[2026-04-10 14:30:39] -rw-r--r--. 2 boincer umatlas     15665 Apr 10 13:17 start_atlas.sh
[2026-04-10 14:30:39] -rw-r--r--. 2 boincer umatlas    656935 Apr 10 13:17 input.tar.gz
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas 190861007 Apr 10 14:28 HITS.pool.root.1
[2026-04-10 14:30:39] -rw-------. 1 boincer umatlas    757760 Apr 10 14:30 result.tar.gz
14:30:40 (253379): run_atlas exited; CPU time 22433.437628
14:30:40 (253379): called boinc_finish(0)

</stderr_txt>
]]>

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