Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:58:31 (1410977): wrapper (7.7.26015): starting
04:58:31 (1410977): wrapper: running run_atlas (--nthreads 3)
[2026-04-11 04:58:31] Arguments: --nthreads 3
[2026-04-11 04:58:31] Threads: 3
[2026-04-11 04:58:31] Checking for CVMFS
[2026-04-11 04:58:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 04:58:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 04:58:32] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 04:58:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 04:58:32] 2.9.2.0 1148888 1684 78148 158328 3 50 32883416 36864000 0 130560 0 991901 99.987 67434 14169 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 04:58:32] CVMFS is ok
[2026-04-11 04:58:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 04:58:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 04:58:32] Further information can be found at the LHC@home message board.
[2026-04-11 04:58:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 04:58:32] Checking for apptainer binary...
[2026-04-11 04:58:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 04:58:32] Running /usr/bin/apptainer --version
[2026-04-11 04:58:32] apptainer version 1.4.1-1.1
[2026-04-11 04:58:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 04:58:32] belleA253
[2026-04-11 04:58:32] apptainer works
[2026-04-11 04:58:32] Set ATHENA_PROC_NUMBER=3
[2026-04-11 04:58:32] Set ATHENA_CORE_NUMBER=3
[2026-04-11 04:58:32] Starting ATLAS job with PandaID=7085527554
[2026-04-11 04:58:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 06:26:08]  *** The last 200 lines of the pilot log: ***
[2026-04-11 06:26:08] 2026-04-11 04:25:37,837 | INFO     | collected zombie processes
[2026-04-11 06:26:08] 2026-04-11 04:25:37,837 | INFO     | will attempt to kill all subprocesses of pid=1419452
[2026-04-11 06:26:08] 2026-04-11 04:25:37,878 | INFO     | process IDs to be killed: [1419452] (in reverse order)
[2026-04-11 06:26:08] 2026-04-11 04:25:37,903 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 06:26:08] 2026-04-11 04:25:37,903 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 06:26:08] 2026-04-11 04:25:37,904 | INFO     | did not find any defunct processes belonging to 1419452
[2026-04-11 06:26:08] 2026-04-11 04:25:37,905 | INFO     | did not find any defunct processes belonging to 1419452
[2026-04-11 06:26:08] 2026-04-11 04:25:37,905 | INFO     | Ready for new job
[2026-04-11 06:26:08] 2026-04-11 04:25:37,906 | INFO     | **************************************
[2026-04-11 06:26:08] 2026-04-11 04:25:37,906 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 06:26:08] 2026-04-11 04:25:37,906 | INFO     | **************************************
[2026-04-11 06:26:08] 2026-04-11 04:25:37,906 | INFO     | 
[2026-04-11 06:26:08] 2026-04-11 04:25:37,906 | INFO     | architecture information:
[2026-04-11 06:26:08] 2026-04-11 04:25:37,906 | INFO     | executing command: cat /etc/os-release
[2026-04-11 06:26:08] 2026-04-11 04:25:37,916 | INFO     | cat /etc/os-release:
[2026-04-11 06:26:08] NAME="CentOS Linux"
[2026-04-11 06:26:08] VERSION="7 (Core)"
[2026-04-11 06:26:08] ID="centos"
[2026-04-11 06:26:08] ID_LIKE="rhel fedora"
[2026-04-11 06:26:08] VERSION_ID="7"
[2026-04-11 06:26:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 06:26:08] ANSI_COLOR="0;31"
[2026-04-11 06:26:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 06:26:08] HOME_URL="https://www.centos.org/"
[2026-04-11 06:26:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 06:26:08] 
[2026-04-11 06:26:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 06:26:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 06:26:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 06:26:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 06:26:08] 
[2026-04-11 06:26:08] 2026-04-11 04:25:37,916 | INFO     | **************************************
[2026-04-11 06:26:08] 2026-04-11 04:25:38,419 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 06:26:08] 2026-04-11 04:25:38,432 | INFO     | sufficient remaining disk space (371620577280 B)
[2026-04-11 06:26:08] 2026-04-11 04:25:38,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 06:26:08] 2026-04-11 04:25:38,432 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 06:26:08] 2026-04-11 04:25:38,432 | INFO     | update_server=False
[2026-04-11 06:26:08] 2026-04-11 04:25:38,432 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 06:26:08] 2026-04-11 04:25:38,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 06:26:08] 2026-04-11 04:25:38,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 06:26:08] 2026-04-11 04:25:38,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 06:26:08] 2026-04-11 04:25:38,433 | INFO     | aborting loop
[2026-04-11 06:26:08] 2026-04-11 04:25:38,549 | INFO     | all data control threads have been joined
[2026-04-11 06:26:08] 2026-04-11 04:25:38,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 06:26:08] 2026-04-11 04:25:39,401 | INFO     | all payload control threads have been joined
[2026-04-11 06:26:08] 2026-04-11 04:25:39,438 | INFO     | [job] retrieve thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:39,438 | INFO     | [job] queue monitor thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:39,439 | INFO     | [job] job monitor thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:39,555 | INFO     | [data] control thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:39,675 | INFO     | all job control threads have been joined
[2026-04-11 06:26:08] 2026-04-11 04:25:39,680 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:39,908 | INFO     | [payload] validate_post thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,320 | INFO     | [job] validate thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,407 | INFO     | [payload] control thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,438 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,530 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,557 | INFO     | [data] copytool_in thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,681 | INFO     | [job] control thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:40,893 | INFO     | [payload] failed_post thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:41,002 | INFO     | [data] copytool_out thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:41,636 | INFO     | job.realtimelogging is not enabled
[2026-04-11 06:26:08] 2026-04-11 04:25:42,437 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:42,642 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 06:26:08] 2026-04-11 04:25:49,237 | INFO     | [monitor] cgroup control has ended
[2026-04-11 06:26:08] 2026-04-11 04:25:49,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709992310592)>', '<ExcThread(monitor, started 139709506381568)>']
[2026-04-11 06:26:08] 2026-04-11 04:25:54,984 | INFO     | all workflow threads have been joined
[2026-04-11 06:26:08] 2026-04-11 04:25:54,984 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 06:26:08] 2026-04-11 04:25:54,984 | INFO     | traces error code: 0
[2026-04-11 06:26:08] 2026-04-11 04:25:54,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 06:26:08] 2026-04-11 04:26:08,837 | INFO     | PID=1415019 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 06:26:08] 2026-04-11 04:26:08,837 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 06:26:08] 2026-04-11 04:26:08,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 06:26:08] 2026-04-11 04:26:08,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 06:26:08] 2026-04-11 04:26:08,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 06:26:08] 2026-04-11 04:26:08,837 | INFO     | [monitor] control thread has ended
[2026-04-11 06:26:08] 2026-04-11 04:26:08,885 [wrapper] ==== pilot stdout END ====
[2026-04-11 06:26:08] 2026-04-11 04:26:08,887 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 06:26:08] 2026-04-11 04:26:08,890 [wrapper] pilotpid: 1415019
[2026-04-11 06:26:08] 2026-04-11 04:26:08,892 [wrapper] Pilot exit status: 0
[2026-04-11 06:26:08] 2026-04-11 04:26:08,900 [wrapper] pandaids: 7085527554
[2026-04-11 06:26:08] 2026-04-11 04:26:08,917 [wrapper] cleanup supervisor_pilot 1424703 1415020
[2026-04-11 06:26:08] 2026-04-11 04:26:08,920 [wrapper] Test setup, not cleaning
[2026-04-11 06:26:08] 2026-04-11 04:26:08,922 [wrapper] apfmon messages muted
[2026-04-11 06:26:08] 2026-04-11 04:26:08,925 [wrapper] ==== wrapper stdout END ====
[2026-04-11 06:26:08] 2026-04-11 04:26:08,927 [wrapper] ==== wrapper stderr END ====
[2026-04-11 06:26:08]  *** Error codes and diagnostics ***
[2026-04-11 06:26:08]     "exeErrorCode": 0,
[2026-04-11 06:26:08]     "pilotErrorCode": 0,
[2026-04-11 06:26:08]  *** Listing of results directory ***
[2026-04-11 06:26:08] total 417448
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc    644190 Apr 10 17:52 pilot3.tar.gz
[2026-04-11 06:26:08] -rwx------ 1 boinc boinc     36322 Apr 10 17:52 runpilot2-wrapper.sh
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc      5094 Apr 10 17:53 queuedata.json
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc       100 Apr 11 04:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 06:26:08] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 04:58 run_atlas
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc       105 Apr 11 04:58 job.xml
[2026-04-11 06:26:08] -rw-r--r-- 2 boinc boinc 221518124 Apr 11 04:58 EVNT.49263189._000805.pool.root.1
[2026-04-11 06:26:08] -rw-r--r-- 2 boinc boinc    656931 Apr 11 04:58 input.tar.gz
[2026-04-11 06:26:08] -rw-r--r-- 2 boinc boinc     15665 Apr 11 04:58 start_atlas.sh
[2026-04-11 06:26:08] drwxrwx--x 2 boinc boinc      4096 Apr 11 04:58 shared
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc         0 Apr 11 04:58 boinc_setup_complete
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc      6363 Apr 11 04:58 init_data.xml
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc         0 Apr 11 04:58 boinc_lockfile
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc      2577 Apr 11 04:58 pandaJob.out
[2026-04-11 06:26:08] -rw------- 1 boinc boinc    997860 Apr 11 04:58 agis_schedconf.cvmfs.json
[2026-04-11 06:26:08] -rw------- 1 boinc boinc   1511579 Apr 11 04:58 agis_ddmendpoints.agis.ALL.json
[2026-04-11 06:26:08] -rw------- 1 boinc boinc       426 Apr 11 04:58 workernode_map.json
[2026-04-11 06:26:08] drwx------ 5 boinc boinc      4096 Apr 11 04:58 pilot3
[2026-04-11 06:26:08] -rw------- 1 boinc boinc 200441110 Apr 11 06:25 HITS.49263191._040491.pool.root.1
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc       487 Apr 11 06:25 boinc_task_state.xml
[2026-04-11 06:26:08] -rw------- 1 boinc boinc      1013 Apr 11 06:25 memory_monitor_summary.json
[2026-04-11 06:26:08] -rw------- 1 boinc boinc    224159 Apr 11 06:25 log.49263191._040491.job.log.tgz.1
[2026-04-11 06:26:08] -rw------- 1 boinc boinc      6317 Apr 11 06:25 heartbeat_new.json
[2026-04-11 06:26:08] -rw------- 1 boinc boinc      6208 Apr 11 06:25 heartbeat.json
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc        27 Apr 11 06:25 wrapper_checkpoint.txt
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc      8192 Apr 11 06:25 boinc_mmap_file
[2026-04-11 06:26:08] -rw------- 1 boinc boinc       747 Apr 11 06:26 pilotlog.txt
[2026-04-11 06:26:08] -rw------- 1 boinc boinc        95 Apr 11 06:26 pilot_heartbeat.json
[2026-04-11 06:26:08] -rw------- 1 boinc boinc    508044 Apr 11 06:26 log.49263191._040491.job.log.1
[2026-04-11 06:26:08] -rw------- 1 boinc boinc       357 Apr 11 06:26 output.list
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc       410 Apr 11 06:26 runtime_log
[2026-04-11 06:26:08] -rw------- 1 boinc boinc    747520 Apr 11 06:26 result.tar.gz
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc      8533 Apr 11 06:26 runtime_log.err
[2026-04-11 06:26:08] -rw------- 1 boinc boinc       660 Apr 11 06:26 1cb72c351e23.diag
[2026-04-11 06:26:08] -rw-r--r-- 1 boinc boinc     10157 Apr 11 06:26 stderr.txt
[2026-04-11 06:26:08] HITS file was successfully produced:
[2026-04-11 06:26:08] -rw------- 1 boinc boinc 200441110 Apr 11 06:25 shared/HITS.pool.root.1
[2026-04-11 06:26:08]  *** Contents of shared directory: ***
[2026-04-11 06:26:08] total 413472
[2026-04-11 06:26:08] -rw-r--r-- 2 boinc boinc 221518124 Apr 11 04:58 ATLAS.root_0
[2026-04-11 06:26:08] -rw-r--r-- 2 boinc boinc    656931 Apr 11 04:58 input.tar.gz
[2026-04-11 06:26:08] -rw-r--r-- 2 boinc boinc     15665 Apr 11 04:58 start_atlas.sh
[2026-04-11 06:26:08] -rw------- 1 boinc boinc 200441110 Apr 11 06:25 HITS.pool.root.1
[2026-04-11 06:26:08] -rw------- 1 boinc boinc    747520 Apr 11 06:26 result.tar.gz
06:26:10 (1410977): run_atlas exited; CPU time 14594.983540
06:26:10 (1410977): called boinc_finish(0)

</stderr_txt>
]]>

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