Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:58:29 (3897881): wrapper (7.7.26015): starting
03:58:29 (3897881): wrapper: running run_atlas (--nthreads 2)
[2026-04-11 03:58:29] Arguments: --nthreads 2
[2026-04-11 03:58:29] Threads: 2
[2026-04-11 03:58:29] Checking for CVMFS
[2026-04-11 03:58:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 03:58:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 03:58:30] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 03:58:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 03:58:30] 2.9.2.0 3735197 1568 55408 158326 3 50 19848835 36864001 0 130560 0 668346 99.982 61893 18979 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 03:58:30] CVMFS is ok
[2026-04-11 03:58:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 03:58:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 03:58:30] Further information can be found at the LHC@home message board.
[2026-04-11 03:58:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 03:58:30] Checking for apptainer binary...
[2026-04-11 03:58:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 03:58:30] Running /usr/bin/apptainer --version
[2026-04-11 03:58:30] apptainer version 1.4.1-1.1
[2026-04-11 03:58:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 03:58:30] magicA244
[2026-04-11 03:58:30] apptainer works
[2026-04-11 03:58:30] Set ATHENA_PROC_NUMBER=2
[2026-04-11 03:58:30] Set ATHENA_CORE_NUMBER=2
[2026-04-11 03:58:30] Starting ATLAS job with PandaID=7085013633
[2026-04-11 03:58:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 06:14:56]  *** The last 200 lines of the pilot log: ***
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,593 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 06:14:56] 2026-04-11 04:13:55,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,593 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 06:14:56] 2026-04-11 04:13:55,593 | INFO     | job 7085013633 has completed (purged errors)
[2026-04-11 06:14:56] 2026-04-11 04:13:55,593 | INFO     | overall cleanup function is called
[2026-04-11 06:14:56] 2026-04-11 04:13:56,598 | INFO     | --- collectZombieJob: --- 10, [3906316]
[2026-04-11 06:14:56] 2026-04-11 04:13:56,598 | INFO     | zombie collector waiting for pid 3906316
[2026-04-11 06:14:56] 2026-04-11 04:13:56,598 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 06:14:56] 2026-04-11 04:13:56,598 | INFO     | collected zombie processes
[2026-04-11 06:14:56] 2026-04-11 04:13:56,598 | INFO     | will attempt to kill all subprocesses of pid=3906316
[2026-04-11 06:14:56] 2026-04-11 04:13:56,627 | INFO     | process IDs to be killed: [3906316] (in reverse order)
[2026-04-11 06:14:56] 2026-04-11 04:13:56,650 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 06:14:56] 2026-04-11 04:13:56,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 06:14:56] 2026-04-11 04:13:56,650 | INFO     | did not find any defunct processes belonging to 3906316
[2026-04-11 06:14:56] 2026-04-11 04:13:56,651 | INFO     | did not find any defunct processes belonging to 3906316
[2026-04-11 06:14:56] 2026-04-11 04:13:56,651 | INFO     | Ready for new job
[2026-04-11 06:14:56] 2026-04-11 04:13:56,652 | INFO     | **************************************
[2026-04-11 06:14:56] 2026-04-11 04:13:56,652 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 06:14:56] 2026-04-11 04:13:56,652 | INFO     | **************************************
[2026-04-11 06:14:56] 2026-04-11 04:13:56,652 | INFO     | 
[2026-04-11 06:14:56] 2026-04-11 04:13:56,652 | INFO     | architecture information:
[2026-04-11 06:14:56] 2026-04-11 04:13:56,652 | INFO     | executing command: cat /etc/os-release
[2026-04-11 06:14:56] 2026-04-11 04:13:56,661 | INFO     | cat /etc/os-release:
[2026-04-11 06:14:56] NAME="CentOS Linux"
[2026-04-11 06:14:56] VERSION="7 (Core)"
[2026-04-11 06:14:56] ID="centos"
[2026-04-11 06:14:56] ID_LIKE="rhel fedora"
[2026-04-11 06:14:56] VERSION_ID="7"
[2026-04-11 06:14:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 06:14:56] ANSI_COLOR="0;31"
[2026-04-11 06:14:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 06:14:56] HOME_URL="https://www.centos.org/"
[2026-04-11 06:14:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 06:14:56] 
[2026-04-11 06:14:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 06:14:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 06:14:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 06:14:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 06:14:56] 
[2026-04-11 06:14:56] 2026-04-11 04:13:56,661 | INFO     | **************************************
[2026-04-11 06:14:56] 2026-04-11 04:13:57,163 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | INFO     | sufficient remaining disk space (504350375936 B)
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | INFO     | update_server=False
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 06:14:56] 2026-04-11 04:13:57,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 06:14:56] 2026-04-11 04:13:57,277 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 06:14:56] 2026-04-11 04:13:57,277 | INFO     | aborting loop
[2026-04-11 06:14:56] 2026-04-11 04:13:57,989 | INFO     | all payload control threads have been joined
[2026-04-11 06:14:56] 2026-04-11 04:13:58,098 | INFO     | all data control threads have been joined
[2026-04-11 06:14:56] 2026-04-11 04:13:58,178 | INFO     | [job] retrieve thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,178 | INFO     | [job] queue monitor thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,282 | INFO     | [job] job monitor thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,290 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,700 | INFO     | [payload] failed_post thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,760 | INFO     | [job] validate thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,858 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,875 | INFO     | all job control threads have been joined
[2026-04-11 06:14:56] 2026-04-11 04:13:58,965 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,990 | INFO     | [data] copytool_in thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:58,994 | INFO     | [payload] control thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:59,103 | INFO     | [data] control thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:59,178 | INFO     | [data] copytool_out thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:59,217 | INFO     | [payload] validate_post thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:13:59,880 | INFO     | [job] control thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:14:01,178 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:14:07,915 | INFO     | job.realtimelogging is not enabled
[2026-04-11 06:14:56] 2026-04-11 04:14:08,920 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 06:14:56] 2026-04-11 04:14:28,251 | INFO     | PID=3901907 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 06:14:56] 2026-04-11 04:14:28,252 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 06:14:56] 2026-04-11 04:14:28,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 06:14:56] 2026-04-11 04:14:28,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 06:14:56] 2026-04-11 04:14:50,912 | INFO     | [monitor] cgroup control has ended
[2026-04-11 06:14:56] 2026-04-11 04:14:51,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868292069184)>', '<ExcThread(monitor, started 139867791013632)>']
[2026-04-11 06:14:56] 2026-04-11 04:14:51,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 06:14:56] 2026-04-11 04:14:51,367 | INFO     | [monitor] control thread has ended
[2026-04-11 06:14:56] 2026-04-11 04:14:56,129 | INFO     | all workflow threads have been joined
[2026-04-11 06:14:56] 2026-04-11 04:14:56,129 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 06:14:56] 2026-04-11 04:14:56,129 | INFO     | traces error code: 0
[2026-04-11 06:14:56] 2026-04-11 04:14:56,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 06:14:56] 2026-04-11 04:14:56,213 [wrapper] ==== pilot stdout END ====
[2026-04-11 06:14:56] 2026-04-11 04:14:56,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 06:14:56] 2026-04-11 04:14:56,219 [wrapper] pilotpid: 3901907
[2026-04-11 06:14:56] 2026-04-11 04:14:56,221 [wrapper] Pilot exit status: 0
[2026-04-11 06:14:56] 2026-04-11 04:14:56,229 [wrapper] pandaids: 7085013633
[2026-04-11 06:14:56] 2026-04-11 04:14:56,245 [wrapper] cleanup supervisor_pilot 3912021 3901908
[2026-04-11 06:14:56] 2026-04-11 04:14:56,247 [wrapper] Test setup, not cleaning
[2026-04-11 06:14:56] 2026-04-11 04:14:56,249 [wrapper] apfmon messages muted
[2026-04-11 06:14:56] 2026-04-11 04:14:56,251 [wrapper] ==== wrapper stdout END ====
[2026-04-11 06:14:56] 2026-04-11 04:14:56,253 [wrapper] ==== wrapper stderr END ====
[2026-04-11 06:14:56]  *** Error codes and diagnostics ***
[2026-04-11 06:14:56]     "exeErrorCode": 0,
[2026-04-11 06:14:56]     "pilotErrorCode": 0,
[2026-04-11 06:14:56]  *** Listing of results directory ***
[2026-04-11 06:14:56] total 415640
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc    644190 Apr 10 14:33 pilot3.tar.gz
[2026-04-11 06:14:56] -rwx------ 1 boinc boinc     36322 Apr 10 14:34 runpilot2-wrapper.sh
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc      5094 Apr 10 14:36 queuedata.json
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc       100 Apr 11 03:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 06:14:56] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 03:58 run_atlas
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc       105 Apr 11 03:58 job.xml
[2026-04-11 06:14:56] -rw-r--r-- 2 boinc boinc 221486163 Apr 11 03:58 EVNT.49263189._000766.pool.root.1
[2026-04-11 06:14:56] -rw-r--r-- 2 boinc boinc    656931 Apr 11 03:58 input.tar.gz
[2026-04-11 06:14:56] -rw-r--r-- 2 boinc boinc     15665 Apr 11 03:58 start_atlas.sh
[2026-04-11 06:14:56] drwxrwx--x 2 boinc boinc      4096 Apr 11 03:58 shared
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc         0 Apr 11 03:58 boinc_setup_complete
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc      6124 Apr 11 03:58 init_data.xml
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc         0 Apr 11 03:58 boinc_lockfile
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc      2577 Apr 11 03:58 pandaJob.out
[2026-04-11 06:14:56] -rw------- 1 boinc boinc    997860 Apr 11 03:58 agis_schedconf.cvmfs.json
[2026-04-11 06:14:56] -rw------- 1 boinc boinc   1511579 Apr 11 03:58 agis_ddmendpoints.agis.ALL.json
[2026-04-11 06:14:56] -rw------- 1 boinc boinc       428 Apr 11 03:58 workernode_map.json
[2026-04-11 06:14:56] drwx------ 5 boinc boinc      4096 Apr 11 03:58 pilot3
[2026-04-11 06:14:56] -rw------- 1 boinc boinc 198039135 Apr 11 06:13 HITS.49263191._039529.pool.root.1
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc       487 Apr 11 06:13 boinc_task_state.xml
[2026-04-11 06:14:56] -rw------- 1 boinc boinc      1013 Apr 11 06:13 memory_monitor_summary.json
[2026-04-11 06:14:56] -rw------- 1 boinc boinc    255292 Apr 11 06:13 log.49263191._039529.job.log.tgz.1
[2026-04-11 06:14:56] -rw------- 1 boinc boinc      6325 Apr 11 06:13 heartbeat_new.json
[2026-04-11 06:14:56] -rw------- 1 boinc boinc      6216 Apr 11 06:13 heartbeat.json
[2026-04-11 06:14:56] -rw------- 1 boinc boinc        95 Apr 11 06:14 pilot_heartbeat.json
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc      8192 Apr 11 06:14 boinc_mmap_file
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc        27 Apr 11 06:14 wrapper_checkpoint.txt
[2026-04-11 06:14:56] -rw------- 1 boinc boinc      4819 Apr 11 06:14 pilotlog.txt
[2026-04-11 06:14:56] -rw------- 1 boinc boinc    769059 Apr 11 06:14 log.49263191._039529.job.log.1
[2026-04-11 06:14:56] -rw------- 1 boinc boinc       357 Apr 11 06:14 output.list
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc       410 Apr 11 06:14 runtime_log
[2026-04-11 06:14:56] -rw------- 1 boinc boinc   1044480 Apr 11 06:14 result.tar.gz
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc      8533 Apr 11 06:14 runtime_log.err
[2026-04-11 06:14:56] -rw------- 1 boinc boinc       662 Apr 11 06:14 ee62199433b9.diag
[2026-04-11 06:14:56] -rw-r--r-- 1 boinc boinc     11809 Apr 11 06:14 stderr.txt
[2026-04-11 06:14:56] HITS file was successfully produced:
[2026-04-11 06:14:56] -rw------- 1 boinc boinc 198039135 Apr 11 06:13 shared/HITS.pool.root.1
[2026-04-11 06:14:56]  *** Contents of shared directory: ***
[2026-04-11 06:14:56] total 411376
[2026-04-11 06:14:56] -rw-r--r-- 2 boinc boinc 221486163 Apr 11 03:58 ATLAS.root_0
[2026-04-11 06:14:56] -rw-r--r-- 2 boinc boinc    656931 Apr 11 03:58 input.tar.gz
[2026-04-11 06:14:56] -rw-r--r-- 2 boinc boinc     15665 Apr 11 03:58 start_atlas.sh
[2026-04-11 06:14:56] -rw------- 1 boinc boinc 198039135 Apr 11 06:13 HITS.pool.root.1
[2026-04-11 06:14:56] -rw------- 1 boinc boinc   1044480 Apr 11 06:14 result.tar.gz
06:14:57 (3897881): run_atlas exited; CPU time 15576.920901
06:14:57 (3897881): called boinc_finish(0)

</stderr_txt>
]]>

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