Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:14 (3773351): wrapper (7.7.26015): starting
03:59:14 (3773351): wrapper: running run_atlas (--nthreads 4)
[2026-04-11 03:59:14] Arguments: --nthreads 4
[2026-04-11 03:59:14] Threads: 4
[2026-04-11 03:59:14] Checking for CVMFS
[2026-04-11 03:59:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 03:59:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 03:59:15] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 03:59:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 03:59:15] 2.9.2.0 3388428 1783 91640 158326 0 50 33642027 36864000 0 130560 0 1456545 99.989 79262 11279 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 03:59:15] CVMFS is ok
[2026-04-11 03:59:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 03:59:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 03:59:15] Further information can be found at the LHC@home message board.
[2026-04-11 03:59:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 03:59:15] Checking for apptainer binary...
[2026-04-11 03:59:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 03:59:15] Running /usr/bin/apptainer --version
[2026-04-11 03:59:15] apptainer version 1.4.1-1.1
[2026-04-11 03:59:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 03:59:15] magicA244a
[2026-04-11 03:59:15] apptainer works
[2026-04-11 03:59:15] Set ATHENA_PROC_NUMBER=4
[2026-04-11 03:59:15] Set ATHENA_CORE_NUMBER=4
[2026-04-11 03:59:15] Starting ATLAS job with PandaID=7085525825
[2026-04-11 03:59:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 05:04:36]  *** The last 200 lines of the pilot log: ***
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,404 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 05:04:36] 2026-04-11 03:03:49,405 | INFO     | job 7085525825 has completed (purged errors)
[2026-04-11 05:04:36] 2026-04-11 03:03:49,405 | INFO     | overall cleanup function is called
[2026-04-11 05:04:36] 2026-04-11 03:03:50,411 | INFO     | --- collectZombieJob: --- 10, [3781964]
[2026-04-11 05:04:36] 2026-04-11 03:03:50,412 | INFO     | zombie collector waiting for pid 3781964
[2026-04-11 05:04:36] 2026-04-11 03:03:50,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 05:04:36] 2026-04-11 03:03:50,412 | INFO     | collected zombie processes
[2026-04-11 05:04:36] 2026-04-11 03:03:50,412 | INFO     | will attempt to kill all subprocesses of pid=3781964
[2026-04-11 05:04:36] 2026-04-11 03:03:50,454 | INFO     | process IDs to be killed: [3781964] (in reverse order)
[2026-04-11 05:04:36] 2026-04-11 03:03:50,481 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 05:04:36] 2026-04-11 03:03:50,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 05:04:36] 2026-04-11 03:03:50,483 | INFO     | did not find any defunct processes belonging to 3781964
[2026-04-11 05:04:36] 2026-04-11 03:03:50,484 | INFO     | did not find any defunct processes belonging to 3781964
[2026-04-11 05:04:36] 2026-04-11 03:03:50,484 | INFO     | Ready for new job
[2026-04-11 05:04:36] 2026-04-11 03:03:50,484 | INFO     | **************************************
[2026-04-11 05:04:36] 2026-04-11 03:03:50,485 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 05:04:36] 2026-04-11 03:03:50,485 | INFO     | **************************************
[2026-04-11 05:04:36] 2026-04-11 03:03:50,485 | INFO     | 
[2026-04-11 05:04:36] 2026-04-11 03:03:50,485 | INFO     | architecture information:
[2026-04-11 05:04:36] 2026-04-11 03:03:50,485 | INFO     | executing command: cat /etc/os-release
[2026-04-11 05:04:36] 2026-04-11 03:03:50,495 | INFO     | cat /etc/os-release:
[2026-04-11 05:04:36] NAME="CentOS Linux"
[2026-04-11 05:04:36] VERSION="7 (Core)"
[2026-04-11 05:04:36] ID="centos"
[2026-04-11 05:04:36] ID_LIKE="rhel fedora"
[2026-04-11 05:04:36] VERSION_ID="7"
[2026-04-11 05:04:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 05:04:36] ANSI_COLOR="0;31"
[2026-04-11 05:04:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 05:04:36] HOME_URL="https://www.centos.org/"
[2026-04-11 05:04:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 05:04:36] 
[2026-04-11 05:04:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 05:04:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 05:04:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 05:04:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 05:04:36] 
[2026-04-11 05:04:36] 2026-04-11 03:03:50,495 | INFO     | **************************************
[2026-04-11 05:04:36] 2026-04-11 03:03:50,998 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 05:04:36] 2026-04-11 03:03:51,011 | INFO     | sufficient remaining disk space (325329092608 B)
[2026-04-11 05:04:36] 2026-04-11 03:03:51,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 05:04:36] 2026-04-11 03:03:51,011 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 05:04:36] 2026-04-11 03:03:51,011 | INFO     | update_server=False
[2026-04-11 05:04:36] 2026-04-11 03:03:51,011 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 05:04:36] 2026-04-11 03:03:51,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 05:04:36] 2026-04-11 03:03:51,012 | INFO     | aborting loop
[2026-04-11 05:04:36] 2026-04-11 03:03:51,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 05:04:36] 2026-04-11 03:03:51,604 | INFO     | all payload control threads have been joined
[2026-04-11 05:04:36] 2026-04-11 03:03:51,698 | INFO     | all data control threads have been joined
[2026-04-11 05:04:36] 2026-04-11 03:03:52,017 | INFO     | [job] job monitor thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,017 | INFO     | [job] retrieve thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,018 | INFO     | [job] queue monitor thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 05:04:36] 2026-04-11 03:03:52,142 | INFO     | [data] copytool_in thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,303 | INFO     | all job control threads have been joined
[2026-04-11 05:04:36] 2026-04-11 03:03:52,439 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,610 | INFO     | [payload] control thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,704 | INFO     | [data] control thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:52,868 | INFO     | [payload] validate_post thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:53,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 05:04:36] 2026-04-11 03:03:53,309 | INFO     | [job] control thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:53,317 | INFO     | [payload] failed_post thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:53,398 | INFO     | [job] validate thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:53,443 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:53,497 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:54,054 | INFO     | [data] copytool_out thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:03:57,110 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:04:01,736 | INFO     | job.realtimelogging is not enabled
[2026-04-11 05:04:36] 2026-04-11 03:04:02,742 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 05:04:36] 2026-04-11 03:04:21,195 | INFO     | PID=3777461 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 05:04:36] 2026-04-11 03:04:21,195 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 05:04:36] 2026-04-11 03:04:21,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 05:04:36] 2026-04-11 03:04:21,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 05:04:36] 2026-04-11 03:04:30,787 | INFO     | [monitor] cgroup control has ended
[2026-04-11 05:04:36] 2026-04-11 03:04:30,860 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917862422336)>', '<ExcThread(monitor, started 139917065705216)>']
[2026-04-11 05:04:36] 2026-04-11 03:04:31,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 05:04:36] 2026-04-11 03:04:31,242 | INFO     | [monitor] control thread has ended
[2026-04-11 05:04:36] 2026-04-11 03:04:35,886 | INFO     | all workflow threads have been joined
[2026-04-11 05:04:36] 2026-04-11 03:04:35,886 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 05:04:36] 2026-04-11 03:04:35,887 | INFO     | traces error code: 0
[2026-04-11 05:04:36] 2026-04-11 03:04:35,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 05:04:36] 2026-04-11 03:04:35,941 [wrapper] ==== pilot stdout END ====
[2026-04-11 05:04:36] 2026-04-11 03:04:35,944 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 05:04:36] 2026-04-11 03:04:35,946 [wrapper] pilotpid: 3777461
[2026-04-11 05:04:36] 2026-04-11 03:04:35,949 [wrapper] Pilot exit status: 0
[2026-04-11 05:04:36] 2026-04-11 03:04:35,957 [wrapper] pandaids: 7085525825
[2026-04-11 05:04:36] 2026-04-11 03:04:35,975 [wrapper] cleanup supervisor_pilot 3787159 3777462
[2026-04-11 05:04:36] 2026-04-11 03:04:35,977 [wrapper] Test setup, not cleaning
[2026-04-11 05:04:36] 2026-04-11 03:04:35,980 [wrapper] apfmon messages muted
[2026-04-11 05:04:36] 2026-04-11 03:04:35,983 [wrapper] ==== wrapper stdout END ====
[2026-04-11 05:04:36] 2026-04-11 03:04:35,985 [wrapper] ==== wrapper stderr END ====
[2026-04-11 05:04:36]  *** Error codes and diagnostics ***
[2026-04-11 05:04:36]     "exeErrorCode": 0,
[2026-04-11 05:04:36]     "pilotErrorCode": 0,
[2026-04-11 05:04:36]  *** Listing of results directory ***
[2026-04-11 05:04:36] total 413776
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc    644190 Apr 10 16:53 pilot3.tar.gz
[2026-04-11 05:04:36] -rwx------ 1 boinc boinc     36322 Apr 10 16:57 runpilot2-wrapper.sh
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc      5094 Apr 10 17:01 queuedata.json
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc       100 Apr 11 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 05:04:36] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 03:59 run_atlas
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc       105 Apr 11 03:59 job.xml
[2026-04-11 05:04:36] -rw-r--r-- 2 boinc boinc 223237634 Apr 11 03:59 EVNT.49263189._000790.pool.root.1
[2026-04-11 05:04:36] -rw-r--r-- 2 boinc boinc    656932 Apr 11 03:59 input.tar.gz
[2026-04-11 05:04:36] -rw-r--r-- 2 boinc boinc     15665 Apr 11 03:59 start_atlas.sh
[2026-04-11 05:04:36] drwxrwx--x 2 boinc boinc      4096 Apr 11 03:59 shared
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc         0 Apr 11 03:59 boinc_setup_complete
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc      6353 Apr 11 03:59 init_data.xml
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc         0 Apr 11 03:59 boinc_lockfile
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc      2577 Apr 11 03:59 pandaJob.out
[2026-04-11 05:04:36] -rw------- 1 boinc boinc    997860 Apr 11 03:59 agis_schedconf.cvmfs.json
[2026-04-11 05:04:36] -rw------- 1 boinc boinc   1511579 Apr 11 03:59 agis_ddmendpoints.agis.ALL.json
[2026-04-11 05:04:36] -rw------- 1 boinc boinc       427 Apr 11 03:59 workernode_map.json
[2026-04-11 05:04:36] drwx------ 5 boinc boinc      4096 Apr 11 03:59 pilot3
[2026-04-11 05:04:36] -rw------- 1 boinc boinc 195141828 Apr 11 05:03 HITS.49263191._040131.pool.root.1
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc       487 Apr 11 05:03 boinc_task_state.xml
[2026-04-11 05:04:36] -rw------- 1 boinc boinc      1015 Apr 11 05:03 memory_monitor_summary.json
[2026-04-11 05:04:36] -rw------- 1 boinc boinc        95 Apr 11 05:03 pilot_heartbeat.json
[2026-04-11 05:04:36] -rw------- 1 boinc boinc    243316 Apr 11 05:03 log.49263191._040131.job.log.tgz.1
[2026-04-11 05:04:36] -rw------- 1 boinc boinc      6336 Apr 11 05:03 heartbeat_new.json
[2026-04-11 05:04:36] -rw------- 1 boinc boinc      6227 Apr 11 05:03 heartbeat.json
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc      8192 Apr 11 05:04 boinc_mmap_file
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc        27 Apr 11 05:04 wrapper_checkpoint.txt
[2026-04-11 05:04:36] -rw------- 1 boinc boinc      4819 Apr 11 05:04 pilotlog.txt
[2026-04-11 05:04:36] -rw------- 1 boinc boinc    391579 Apr 11 05:04 log.49263191._040131.job.log.1
[2026-04-11 05:04:36] -rw------- 1 boinc boinc       357 Apr 11 05:04 output.list
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc       410 Apr 11 05:04 runtime_log
[2026-04-11 05:04:36] -rw------- 1 boinc boinc    655360 Apr 11 05:04 result.tar.gz
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc      8538 Apr 11 05:04 runtime_log.err
[2026-04-11 05:04:36] -rw------- 1 boinc boinc       661 Apr 11 05:04 0fbce505d9ee.diag
[2026-04-11 05:04:36] -rw-r--r-- 1 boinc boinc     12616 Apr 11 05:04 stderr.txt
[2026-04-11 05:04:36] HITS file was successfully produced:
[2026-04-11 05:04:36] -rw------- 1 boinc boinc 195141828 Apr 11 05:03 shared/HITS.pool.root.1
[2026-04-11 05:04:36]  *** Contents of shared directory: ***
[2026-04-11 05:04:36] total 409888
[2026-04-11 05:04:36] -rw-r--r-- 2 boinc boinc 223237634 Apr 11 03:59 ATLAS.root_0
[2026-04-11 05:04:36] -rw-r--r-- 2 boinc boinc    656932 Apr 11 03:59 input.tar.gz
[2026-04-11 05:04:36] -rw-r--r-- 2 boinc boinc     15665 Apr 11 03:59 start_atlas.sh
[2026-04-11 05:04:36] -rw------- 1 boinc boinc 195141828 Apr 11 05:03 HITS.pool.root.1
[2026-04-11 05:04:36] -rw------- 1 boinc boinc    655360 Apr 11 05:04 result.tar.gz
05:04:37 (3773351): run_atlas exited; CPU time 14135.372032
05:04:37 (3773351): called boinc_finish(0)

</stderr_txt>
]]>

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