Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:03:57 (827005): wrapper (7.7.26015): starting
04:03:57 (827005): wrapper: running run_atlas (--nthreads 3)
[2026-04-11 04:03:57] Arguments: --nthreads 3
[2026-04-11 04:03:57] Threads: 3
[2026-04-11 04:03:57] Checking for CVMFS
[2026-04-11 04:03:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 04:03:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 04:03:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 04:03:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 04:03:58] 2.9.2.0 553273 1699 78064 158326 0 50 34475168 36864001 0 130560 0 1045839 99.986 74288 12504 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 04:03:58] CVMFS is ok
[2026-04-11 04:03:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 04:03:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 04:03:58] Further information can be found at the LHC@home message board.
[2026-04-11 04:03:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 04:03:58] Checking for apptainer binary...
[2026-04-11 04:03:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 04:03:58] Running /usr/bin/apptainer --version
[2026-04-11 04:03:58] apptainer version 1.4.1-1.1
[2026-04-11 04:03:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 04:03:58] thA335b
[2026-04-11 04:03:58] apptainer works
[2026-04-11 04:03:58] Set ATHENA_PROC_NUMBER=3
[2026-04-11 04:03:58] Set ATHENA_CORE_NUMBER=3
[2026-04-11 04:03:58] Starting ATLAS job with PandaID=7085012500
[2026-04-11 04:03:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 05:26:42]  *** The last 200 lines of the pilot log: ***
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | job 7085012500 has completed (purged errors)
[2026-04-11 05:26:42] 2026-04-11 03:26:10,008 | INFO     | overall cleanup function is called
[2026-04-11 05:26:42] 2026-04-11 03:26:11,015 | INFO     | --- collectZombieJob: --- 10, [835496]
[2026-04-11 05:26:42] 2026-04-11 03:26:11,015 | INFO     | zombie collector waiting for pid 835496
[2026-04-11 05:26:42] 2026-04-11 03:26:11,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 05:26:42] 2026-04-11 03:26:11,015 | INFO     | collected zombie processes
[2026-04-11 05:26:42] 2026-04-11 03:26:11,015 | INFO     | will attempt to kill all subprocesses of pid=835496
[2026-04-11 05:26:42] 2026-04-11 03:26:11,056 | INFO     | process IDs to be killed: [835496] (in reverse order)
[2026-04-11 05:26:42] 2026-04-11 03:26:11,082 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 05:26:42] 2026-04-11 03:26:11,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 05:26:42] 2026-04-11 03:26:11,083 | INFO     | did not find any defunct processes belonging to 835496
[2026-04-11 05:26:42] 2026-04-11 03:26:11,084 | INFO     | did not find any defunct processes belonging to 835496
[2026-04-11 05:26:42] 2026-04-11 03:26:11,084 | INFO     | Ready for new job
[2026-04-11 05:26:42] 2026-04-11 03:26:11,085 | INFO     | **************************************
[2026-04-11 05:26:42] 2026-04-11 03:26:11,085 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 05:26:42] 2026-04-11 03:26:11,085 | INFO     | **************************************
[2026-04-11 05:26:42] 2026-04-11 03:26:11,085 | INFO     | 
[2026-04-11 05:26:42] 2026-04-11 03:26:11,085 | INFO     | architecture information:
[2026-04-11 05:26:42] 2026-04-11 03:26:11,085 | INFO     | executing command: cat /etc/os-release
[2026-04-11 05:26:42] 2026-04-11 03:26:11,095 | INFO     | cat /etc/os-release:
[2026-04-11 05:26:42] NAME="CentOS Linux"
[2026-04-11 05:26:42] VERSION="7 (Core)"
[2026-04-11 05:26:42] ID="centos"
[2026-04-11 05:26:42] ID_LIKE="rhel fedora"
[2026-04-11 05:26:42] VERSION_ID="7"
[2026-04-11 05:26:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 05:26:42] ANSI_COLOR="0;31"
[2026-04-11 05:26:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 05:26:42] HOME_URL="https://www.centos.org/"
[2026-04-11 05:26:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 05:26:42] 
[2026-04-11 05:26:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 05:26:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 05:26:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 05:26:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 05:26:42] 
[2026-04-11 05:26:42] 2026-04-11 03:26:11,095 | INFO     | **************************************
[2026-04-11 05:26:42] 2026-04-11 03:26:11,598 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 05:26:42] 2026-04-11 03:26:11,612 | INFO     | sufficient remaining disk space (369980604416 B)
[2026-04-11 05:26:42] 2026-04-11 03:26:11,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 05:26:42] 2026-04-11 03:26:11,613 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 05:26:42] 2026-04-11 03:26:11,613 | INFO     | update_server=False
[2026-04-11 05:26:42] 2026-04-11 03:26:11,613 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 05:26:42] 2026-04-11 03:26:11,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 05:26:42] 2026-04-11 03:26:11,692 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-11 05:26:42] 2026-04-11 03:26:11,693 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-11 05:26:42] 2026-04-11 03:26:11,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 05:26:42] 2026-04-11 03:26:11,693 | INFO     | will abort loop
[2026-04-11 05:26:42] 2026-04-11 03:26:12,216 | INFO     | all data control threads have been joined
[2026-04-11 05:26:42] 2026-04-11 03:26:12,610 | INFO     | all payload control threads have been joined
[2026-04-11 05:26:42] 2026-04-11 03:26:12,618 | INFO     | [job] retrieve thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:12,643 | INFO     | [payload] failed_post thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:12,652 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:12,698 | INFO     | [job] job monitor thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:12,789 | INFO     | [data] copytool_in thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:13,022 | INFO     | all job control threads have been joined
[2026-04-11 05:26:42] 2026-04-11 03:26:13,222 | INFO     | [data] control thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:13,537 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:13,616 | INFO     | [payload] control thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:13,617 | INFO     | [data] copytool_out thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:13,761 | INFO     | [monitor] cgroup control has ended
[2026-04-11 05:26:42] 2026-04-11 03:26:13,866 | INFO     | [payload] validate_post thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:14,018 | INFO     | [job] validate thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:14,019 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:14,024 | INFO     | [job] control thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:14,377 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 05:26:42] 2026-04-11 03:26:14,495 | INFO     | job.realtimelogging is not enabled
[2026-04-11 05:26:42] 2026-04-11 03:26:14,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 05:26:42] 2026-04-11 03:26:15,501 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:15,510 | INFO     | [job] queue monitor thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:18,384 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 05:26:42] 2026-04-11 03:26:19,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547430635328)>', '<ExcThread(monitor, started 140546941110016)>']
[2026-04-11 05:26:42] 2026-04-11 03:26:24,219 | INFO     | all workflow threads have been joined
[2026-04-11 05:26:42] 2026-04-11 03:26:24,219 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 05:26:42] 2026-04-11 03:26:24,219 | INFO     | traces error code: 0
[2026-04-11 05:26:42] 2026-04-11 03:26:24,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 05:26:42] 2026-04-11 03:26:42,024 | INFO     | PID=831066 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-11 05:26:42] 2026-04-11 03:26:42,024 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 05:26:42] 2026-04-11 03:26:42,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 05:26:42] 2026-04-11 03:26:42,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 05:26:42] 2026-04-11 03:26:42,024 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 05:26:42] 2026-04-11 03:26:42,024 | INFO     | [monitor] control thread has ended
[2026-04-11 05:26:42] 2026-04-11 03:26:42,072 [wrapper] ==== pilot stdout END ====
[2026-04-11 05:26:42] 2026-04-11 03:26:42,074 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 05:26:42] 2026-04-11 03:26:42,077 [wrapper] pilotpid: 831066
[2026-04-11 05:26:42] 2026-04-11 03:26:42,079 [wrapper] Pilot exit status: 0
[2026-04-11 05:26:42] 2026-04-11 03:26:42,087 [wrapper] pandaids: 7085012500
[2026-04-11 05:26:42] 2026-04-11 03:26:42,104 [wrapper] cleanup supervisor_pilot  840848 831067
[2026-04-11 05:26:42] 2026-04-11 03:26:42,106 [wrapper] Test setup, not cleaning
[2026-04-11 05:26:42] 2026-04-11 03:26:42,109 [wrapper] apfmon messages muted
[2026-04-11 05:26:42] 2026-04-11 03:26:42,111 [wrapper] ==== wrapper stdout END ====
[2026-04-11 05:26:42] 2026-04-11 03:26:42,114 [wrapper] ==== wrapper stderr END ====
[2026-04-11 05:26:42]  *** Error codes and diagnostics ***
[2026-04-11 05:26:42]     "exeErrorCode": 0,
[2026-04-11 05:26:42]     "pilotErrorCode": 0,
[2026-04-11 05:26:42]  *** Listing of results directory ***
[2026-04-11 05:26:42] total 412652
[2026-04-11 05:26:42] -rwx------ 1 boinc boinc     36322 Apr 10 13:48 runpilot2-wrapper.sh
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc      5094 Apr 10 13:48 queuedata.json
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc    644190 Apr 10 13:49 pilot3.tar.gz
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc       100 Apr 11 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 05:26:42] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 04:03 run_atlas
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc       105 Apr 11 04:03 job.xml
[2026-04-11 05:26:42] -rw-r--r-- 2 boinc boinc 223998755 Apr 11 04:03 EVNT.49263189._000730.pool.root.1
[2026-04-11 05:26:42] -rw-r--r-- 2 boinc boinc    656929 Apr 11 04:03 input.tar.gz
[2026-04-11 05:26:42] -rw-r--r-- 2 boinc boinc     15665 Apr 11 04:03 start_atlas.sh
[2026-04-11 05:26:42] drwxrwx--x 2 boinc boinc      4096 Apr 11 04:03 shared
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc         0 Apr 11 04:03 boinc_setup_complete
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc      6363 Apr 11 04:03 init_data.xml
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc         0 Apr 11 04:03 boinc_lockfile
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc      2577 Apr 11 04:03 pandaJob.out
[2026-04-11 05:26:42] -rw------- 1 boinc boinc    997860 Apr 11 04:04 agis_schedconf.cvmfs.json
[2026-04-11 05:26:42] -rw------- 1 boinc boinc   1511579 Apr 11 04:04 agis_ddmendpoints.agis.ALL.json
[2026-04-11 05:26:42] -rw------- 1 boinc boinc       423 Apr 11 04:04 workernode_map.json
[2026-04-11 05:26:42] drwx------ 5 boinc boinc      4096 Apr 11 04:04 pilot3
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc       487 Apr 11 05:25 boinc_task_state.xml
[2026-04-11 05:26:42] -rw------- 1 boinc boinc 193082048 Apr 11 05:25 HITS.49263191._038624.pool.root.1
[2026-04-11 05:26:42] -rw------- 1 boinc boinc      1017 Apr 11 05:26 memory_monitor_summary.json
[2026-04-11 05:26:42] -rw------- 1 boinc boinc    231432 Apr 11 05:26 log.49263191._038624.job.log.tgz.1
[2026-04-11 05:26:42] -rw------- 1 boinc boinc      6312 Apr 11 05:26 heartbeat_new.json
[2026-04-11 05:26:42] -rw------- 1 boinc boinc      6203 Apr 11 05:26 heartbeat.json
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc      8192 Apr 11 05:26 boinc_mmap_file
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc        27 Apr 11 05:26 wrapper_checkpoint.txt
[2026-04-11 05:26:42] -rw------- 1 boinc boinc       746 Apr 11 05:26 pilotlog.txt
[2026-04-11 05:26:42] -rw------- 1 boinc boinc        95 Apr 11 05:26 pilot_heartbeat.json
[2026-04-11 05:26:42] -rw------- 1 boinc boinc    481922 Apr 11 05:26 log.49263191._038624.job.log.1
[2026-04-11 05:26:42] -rw------- 1 boinc boinc       357 Apr 11 05:26 output.list
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc       410 Apr 11 05:26 runtime_log
[2026-04-11 05:26:42] -rw------- 1 boinc boinc    727040 Apr 11 05:26 result.tar.gz
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc      8523 Apr 11 05:26 runtime_log.err
[2026-04-11 05:26:42] -rw------- 1 boinc boinc       658 Apr 11 05:26 e3999c896e8e.diag
[2026-04-11 05:26:42] -rw-r--r-- 1 boinc boinc     12340 Apr 11 05:26 stderr.txt
[2026-04-11 05:26:42] HITS file was successfully produced:
[2026-04-11 05:26:42] -rw------- 1 boinc boinc 193082048 Apr 11 05:25 shared/HITS.pool.root.1
[2026-04-11 05:26:42]  *** Contents of shared directory: ***
[2026-04-11 05:26:42] total 408692
[2026-04-11 05:26:42] -rw-r--r-- 2 boinc boinc 223998755 Apr 11 04:03 ATLAS.root_0
[2026-04-11 05:26:42] -rw-r--r-- 2 boinc boinc    656929 Apr 11 04:03 input.tar.gz
[2026-04-11 05:26:42] -rw-r--r-- 2 boinc boinc     15665 Apr 11 04:03 start_atlas.sh
[2026-04-11 05:26:42] -rw------- 1 boinc boinc 193082048 Apr 11 05:25 HITS.pool.root.1
[2026-04-11 05:26:42] -rw------- 1 boinc boinc    727040 Apr 11 05:26 result.tar.gz
05:26:43 (827005): run_atlas exited; CPU time 13778.699261
05:26:43 (827005): called boinc_finish(0)

</stderr_txt>
]]>

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