Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:27:57 (4133321): wrapper (7.7.26015): starting
09:27:57 (4133321): wrapper: running run_atlas (--nthreads 8)
[2026-04-10 09:27:57] Arguments: --nthreads 8
[2026-04-10 09:27:57] Threads: 8
[2026-04-10 09:27:57] Checking for CVMFS
[2026-04-10 09:27:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 09:27:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 09:27:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 09:27:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 09:27:58] 2.13.3.0 7433 153982 242812 158303 2 58 31164171 40960000 27561 16776704 0 1019995027 99.675 852336911 32087 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-10 09:27:58] CVMFS is ok
[2026-04-10 09:27:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 09:27:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 09:27:58] Further information can be found at the LHC@home message board.
[2026-04-10 09:27:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 09:27:58] Checking for apptainer binary...
[2026-04-10 09:27:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 09:27:58] Running /usr/bin/apptainer --version
[2026-04-10 09:27:58] apptainer version 1.4.5-2.el9
[2026-04-10 09:27:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 09:27:58] c-212-16.aglt2.org
[2026-04-10 09:27:58] apptainer works
[2026-04-10 09:27:58] Set ATHENA_PROC_NUMBER=8
[2026-04-10 09:27:58] Set ATHENA_CORE_NUMBER=8
[2026-04-10 09:27:58] Starting ATLAS job with PandaID=7083688386
[2026-04-10 09:27:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 11:55:59]  *** The last 200 lines of the pilot log: ***
[2026-04-10 11:55:59] 2026-04-10 15:55:24,069 | INFO     | PID=4138134 has CPU usage=16.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-10 11:55:59] 2026-04-10 15:55:24,070 | INFO     | .. there are 45 such processes running
[2026-04-10 11:55:59] 2026-04-10 15:55:24,682 | INFO     | monitor loop #537: job 0:7083688386 is in state 'finished'
[2026-04-10 11:55:59] 2026-04-10 15:55:24,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,399 | INFO     | job 7083688386 has state=finished
[2026-04-10 11:55:59] 2026-04-10 15:55:26,399 | INFO     | preparing for final server update for job 7083688386 in state='finished'
[2026-04-10 11:55:59] 2026-04-10 15:55:26,399 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7083688386/jobReport.json
[2026-04-10 11:55:59] 2026-04-10 15:55:26,402 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-04-10 11:55:59] 2026-04-10 15:55:26,403 | INFO     | this job has now completed (state=finished)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,423 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,423 | INFO     | log transfer has been attempted: DONE
[2026-04-10 11:55:59] 2026-04-10 15:55:26,423 | INFO     | job 7083688386 has finished - writing final server update
[2026-04-10 11:55:59] 2026-04-10 15:55:26,424 | INFO     | total number of processed events: 400 (read)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,439 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7083688386/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,440 | INFO     | extracted standard info from prmon json
[2026-04-10 11:55:59] 2026-04-10 15:55:26,440 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 11:55:59] 2026-04-10 15:55:26,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 11:55:59] 2026-04-10 15:55:26,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 11:55:59] 2026-04-10 15:55:26,442 | INFO     | fitting pss+swap vs Time
[2026-04-10 11:55:59] 2026-04-10 15:55:26,443 | INFO     | sum of square deviations: 925855621.9930569
[2026-04-10 11:55:59] 2026-04-10 15:55:26,443 | INFO     | sum of deviations: -19213881479.743057
[2026-04-10 11:55:59] 2026-04-10 15:55:26,443 | INFO     | mean x (centered): 0.0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,443 | INFO     | mean y: 2584667.2430555555
[2026-04-10 11:55:59] 2026-04-10 15:55:26,443 | INFO     | intersect: 2584667.2430555555
[2026-04-10 11:55:59] 2026-04-10 15:55:26,444 | INFO     | chi2: 1.7685102947123437
[2026-04-10 11:55:59] 2026-04-10 15:55:26,444 | INFO     | sum of square deviations: 832719296.9928035
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | sum of deviations: -18246994127.992813
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | mean x (centered): 0.0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | mean y: 2586263.992805755
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | intersect: 2586263.992805755
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | chi2: 1.7622307530889145
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | current chi2=1.7622307530889145 (change=0.35507520890346517 %)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | right removable region: 138
[2026-04-10 11:55:59] 2026-04-10 15:55:26,445 | INFO     | sum of square deviations: 832718686.9928035
[2026-04-10 11:55:59] 2026-04-10 15:55:26,446 | INFO     | sum of deviations: -40340946253.007195
[2026-04-10 11:55:59] 2026-04-10 15:55:26,446 | INFO     | mean x (centered): 0.0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,446 | INFO     | mean y: 2618623.007194245
[2026-04-10 11:55:59] 2026-04-10 15:55:26,446 | INFO     | intersect: 2618623.007194245
[2026-04-10 11:55:59] 2026-04-10 15:55:26,446 | INFO     | chi2: 0.2308851023223487
[2026-04-10 11:55:59] 2026-04-10 15:55:26,446 | INFO     | current chi2=0.2308851023223487 (change=86.9446560185332 %)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,447 | INFO     | sum of square deviations: 746046989.4925351
[2026-04-10 11:55:59] 2026-04-10 15:55:26,447 | INFO     | sum of deviations: -35012989457.65672
[2026-04-10 11:55:59] 2026-04-10 15:55:26,447 | INFO     | mean x (centered): 0.0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,447 | INFO     | mean y: 2609227.656716418
[2026-04-10 11:55:59] 2026-04-10 15:55:26,447 | INFO     | intersect: 2609227.656716418
[2026-04-10 11:55:59] 2026-04-10 15:55:26,448 | INFO     | chi2: 0.2280586218234733
[2026-04-10 11:55:59] 2026-04-10 15:55:26,448 | INFO     | current chi2=0.2280586218234733 (change=1.2241935362850884 %)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,448 | INFO     | left removable region: 10
[2026-04-10 11:55:59] 2026-04-10 15:55:26,448 | INFO     | sum of square deviations: 650248349.9921875
[2026-04-10 11:55:59] 2026-04-10 15:55:26,448 | INFO     | sum of deviations: -33279145108.382812
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | mean x (centered): 0.0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | mean y: 2612560.8828125
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | intersect: 2612560.8828125
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | chi2: 0.21437733950078622
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | current memory leak: -51.18 B/s (using 128 data points, chi2=0.21)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | could have reported an average CPU frequency of 3200 MHz (8 samples)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,449 | INFO     | ..............................
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . Timing measurements:
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . get job = 0 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . initial setup = 14 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . payload setup = 31 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . stage-in = 0 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . payload execution = 8758 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . stage-out = 0 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | . log creation = 0 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,450 | INFO     | ..............................
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | 
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | job summary report
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | --------------------------------------------------
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | PanDA job id: 7083688386
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | task id: 49263191
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | errors: (none)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | pilot state: finished 
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | transexitcode: 0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,893 | INFO     | exeerrorcode: 0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | exeerrordiag: 
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | exitcode: 0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | exitmsg: OK
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | cpuconsumptiontime: 33159 s
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | nevents: 400
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | neventsw: 0
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | pid: 4160511
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | pgrp: 4160511
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | corecount: 8
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | event service: False
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | sizes: {0: 2279896, 1: 2281470, 11: 2281498, 8793: 2309424, 8796: 2318422, 8798: 2318478, 8801: 2318800}
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | --------------------------------------------------
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | 
[2026-04-10 11:55:59] 2026-04-10 15:55:26,894 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,930 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 11:55:59] 2026-04-10 15:55:26,931 | INFO     | job 7083688386 has completed (purged errors)
[2026-04-10 11:55:59] 2026-04-10 15:55:26,931 | INFO     | overall cleanup function is called
[2026-04-10 11:55:59] 2026-04-10 15:55:27,939 | INFO     | --- collectZombieJob: --- 10, [4160511]
[2026-04-10 11:55:59] 2026-04-10 15:55:27,939 | INFO     | zombie collector waiting for pid 4160511
[2026-04-10 11:55:59] 2026-04-10 15:55:27,939 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 11:55:59] 2026-04-10 15:55:27,939 | INFO     | collected zombie processes
[2026-04-10 11:55:59] 2026-04-10 15:55:27,940 | INFO     | will attempt to kill all subprocesses of pid=4160511
[2026-04-10 11:55:59] 2026-04-10 15:55:28,788 | INFO     | process IDs to be killed: [4160511] (in reverse order)
[2026-04-10 11:55:59] 2026-04-10 15:55:29,051 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 11:55:59] 2026-04-10 15:55:29,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 11:55:59] 2026-04-10 15:55:29,104 | INFO     | did not find any defunct processes belonging to 4160511
[2026-04-10 11:55:59] 2026-04-10 15:55:29,125 | INFO     | did not find any defunct processes belonging to 4160511
[2026-04-10 11:55:59] 2026-04-10 15:55:29,126 | INFO     | Ready for new job
[2026-04-10 11:55:59] 2026-04-10 15:55:29,127 | INFO     | **************************************
[2026-04-10 11:55:59] 2026-04-10 15:55:29,129 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 11:55:59] 2026-04-10 15:55:29,129 | INFO     | **************************************
[2026-04-10 11:55:59] 2026-04-10 15:55:29,129 | INFO     | 
[2026-04-10 11:55:59] 2026-04-10 15:55:29,134 | INFO     | architecture information:
[2026-04-10 11:55:59] 2026-04-10 15:55:29,147 | INFO     | executing command: cat /etc/os-release
[2026-04-10 11:55:59] 2026-04-10 15:55:29,193 | INFO     | cat /etc/os-release:
[2026-04-10 11:55:59] NAME="CentOS Linux"
[2026-04-10 11:55:59] VERSION="7 (Core)"
[2026-04-10 11:55:59] ID="centos"
[2026-04-10 11:55:59] ID_LIKE="rhel fedora"
[2026-04-10 11:55:59] VERSION_ID="7"
[2026-04-10 11:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 11:55:59] ANSI_COLOR="0;31"
[2026-04-10 11:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 11:55:59] HOME_URL="https://www.centos.org/"
[2026-04-10 11:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 11:55:59] 
[2026-04-10 11:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 11:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 11:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 11:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 11:55:59] 
[2026-04-10 11:55:59] 2026-04-10 15:55:29,193 | INFO     | **************************************
[2026-04-10 11:55:59] 2026-04-10 15:55:29,697 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-10 11:55:59] 2026-04-10 15:55:29,722 | INFO     | sufficient remaining disk space (127816171520 B)
[2026-04-10 11:55:59] 2026-04-10 15:55:29,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 11:55:59] 2026-04-10 15:55:29,723 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 11:55:59] 2026-04-10 15:55:29,723 | INFO     | update_server=False
[2026-04-10 11:55:59] 2026-04-10 15:55:29,723 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 11:55:59] 2026-04-10 15:55:29,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 11:55:59] 2026-04-10 15:55:29,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 11:55:59] 2026-04-10 15:55:30,142 | INFO     | all job control threads have been joined
[2026-04-10 11:55:59] 2026-04-10 15:55:30,150 | INFO     | all data control threads have been joined
[2026-04-10 11:55:59] 2026-04-10 15:55:30,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 11:55:59] 2026-04-10 15:55:30,711 | INFO     | aborting loop
[2026-04-10 11:55:59] 2026-04-10 15:55:30,740 | INFO     | [job] retrieve thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:30,821 | INFO     | [payload] failed_post thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:30,887 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,016 | INFO     | all payload control threads have been joined
[2026-04-10 11:55:59] 2026-04-10 15:55:31,148 | INFO     | [job] control thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,156 | INFO     | [data] control thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,306 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,360 | INFO     | [job] validate thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,394 | INFO     | [payload] validate_post thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 11:55:59] 2026-04-10 15:55:31,685 | INFO     | [data] copytool_in thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,722 | INFO     | [job] job monitor thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:31,745 | INFO     | [data] copytool_out thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:32,024 | INFO     | [payload] control thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:32,138 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:32,227 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:32,571 | INFO     | [job] queue monitor thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:33,735 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 11:55:59] 2026-04-10 15:55:49,518 | INFO     | [monitor] cgroup control has ended
[2026-04-10 11:55:59] 2026-04-10 15:55:50,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140217515976512)>', '<ExcThread(monitor, started 140216992003840)>']
[2026-04-10 11:55:59] 2026-04-10 15:55:55,116 | INFO     | all workflow threads have been joined
[2026-04-10 11:55:59] 2026-04-10 15:55:55,116 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 11:55:59] 2026-04-10 15:55:55,116 | INFO     | traces error code: 0
[2026-04-10 11:55:59] 2026-04-10 15:55:55,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 11:55:59] 2026-04-10 15:55:58,867 | INFO     | PID=4138134 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 11:55:59] 2026-04-10 15:55:58,868 | INFO     | .. there are 46 such processes running
[2026-04-10 11:55:59] 2026-04-10 15:55:58,868 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 11:55:59] 2026-04-10 15:55:58,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 11:55:59] 2026-04-10 15:55:58,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 11:55:59] 2026-04-10 15:55:58,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 11:55:59] 2026-04-10 15:55:58,868 | INFO     | [monitor] control thread has ended
[2026-04-10 11:55:59] 2026-04-10 15:55:59,067 [wrapper] ==== pilot stdout END ====
[2026-04-10 11:55:59] 2026-04-10 15:55:59,071 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 11:55:59] 2026-04-10 15:55:59,075 [wrapper] pilotpid: 4138134
[2026-04-10 11:55:59] 2026-04-10 15:55:59,078 [wrapper] Pilot exit status: 0
[2026-04-10 11:55:59] 2026-04-10 15:55:59,092 [wrapper] pandaids: 7083688386
[2026-04-10 11:55:59] 2026-04-10 15:55:59,216 [wrapper] cleanup supervisor_pilot 1146250 4138135
[2026-04-10 11:55:59] 2026-04-10 15:55:59,219 [wrapper] Test setup, not cleaning
[2026-04-10 11:55:59] 2026-04-10 15:55:59,223 [wrapper] apfmon messages muted
[2026-04-10 11:55:59] 2026-04-10 15:55:59,227 [wrapper] ==== wrapper stdout END ====
[2026-04-10 11:55:59] 2026-04-10 15:55:59,231 [wrapper] ==== wrapper stderr END ====
[2026-04-10 11:55:59]  *** Error codes and diagnostics ***
[2026-04-10 11:55:59]     "exeErrorCode": 0,
[2026-04-10 11:55:59]     "pilotErrorCode": 0,
[2026-04-10 11:55:59]  *** Listing of results directory ***
[2026-04-10 11:55:59] total 418176
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas    644190 Apr 10 02:21 pilot3.tar.gz
[2026-04-10 11:55:59] -rwx------. 1 boincer umatlas     36322 Apr 10 02:21 runpilot2-wrapper.sh
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas      5094 Apr 10 02:27 queuedata.json
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas       100 Apr 10 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 11:55:59] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 10 09:27 run_atlas
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas       105 Apr 10 09:27 job.xml
[2026-04-10 11:55:59] -rw-r--r--. 2 boincer umatlas 223160318 Apr 10 09:27 EVNT.49263189._000629.pool.root.1
[2026-04-10 11:55:59] -rw-r--r--. 2 boincer umatlas     15665 Apr 10 09:27 start_atlas.sh
[2026-04-10 11:55:59] drwxrwx--x. 2 boincer umatlas      4096 Apr 10 09:27 shared
[2026-04-10 11:55:59] -rw-r--r--. 2 boincer umatlas    656935 Apr 10 09:27 input.tar.gz
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas         0 Apr 10 09:27 boinc_lockfile
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas      2577 Apr 10 09:27 pandaJob.out
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas        57 Apr 10 09:27 setup.sh.local
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas    997876 Apr 10 09:28 agis_schedconf.cvmfs.json
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas   1511579 Apr 10 09:28 agis_ddmendpoints.agis.ALL.json
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas       429 Apr 10 09:28 workernode_map.json
[2026-04-10 11:55:59] drwx------. 5 boincer umatlas      4096 Apr 10 09:28 pilot3
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas      6873 Apr 10 11:46 init_data.xml
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas       487 Apr 10 11:54 boinc_task_state.xml
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas 198858086 Apr 10 11:54 HITS.49263191._035985.pool.root.1
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas        95 Apr 10 11:55 pilot_heartbeat.json
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas      1041 Apr 10 11:55 memory_monitor_summary.json
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas    329355 Apr 10 11:55 log.49263191._035985.job.log.tgz.1
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas      6362 Apr 10 11:55 heartbeat_new.json
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas      6253 Apr 10 11:55 heartbeat.json
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas        27 Apr 10 11:55 wrapper_checkpoint.txt
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas      8192 Apr 10 11:55 boinc_mmap_file
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas       823 Apr 10 11:55 pilotlog.txt
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas    733884 Apr 10 11:55 log.49263191._035985.job.log.1
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas       357 Apr 10 11:55 output.list
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas       410 Apr 10 11:55 runtime_log
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas   1085440 Apr 10 11:55 result.tar.gz
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas      8963 Apr 10 11:55 runtime_log.err
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas       656 Apr 10 11:55 96ff17ef3d63.diag
[2026-04-10 11:55:59] -rw-r--r--. 1 boincer umatlas     21330 Apr 10 11:55 stderr.txt
[2026-04-10 11:55:59] HITS file was successfully produced:
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas 198858086 Apr 10 11:54 shared/HITS.pool.root.1
[2026-04-10 11:55:59]  *** Contents of shared directory: ***
[2026-04-10 11:55:59] total 413860
[2026-04-10 11:55:59] -rw-r--r--. 2 boincer umatlas 223160318 Apr 10 09:27 ATLAS.root_0
[2026-04-10 11:55:59] -rw-r--r--. 2 boincer umatlas     15665 Apr 10 09:27 start_atlas.sh
[2026-04-10 11:55:59] -rw-r--r--. 2 boincer umatlas    656935 Apr 10 09:27 input.tar.gz
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas 198858086 Apr 10 11:54 HITS.pool.root.1
[2026-04-10 11:55:59] -rw-------. 1 boincer umatlas   1085440 Apr 10 11:55 result.tar.gz
11:56:00 (4133321): run_atlas exited; CPU time 33485.980574
11:56:00 (4133321): called boinc_finish(0)

</stderr_txt>
]]>

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