Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:00:33 (2673609): wrapper (7.7.26015): starting
13:00:33 (2673609): wrapper: running run_atlas (--nthreads 12)
[2026-04-11 13:00:33] Arguments: --nthreads 12
[2026-04-11 13:00:33] Threads: 12
[2026-04-11 13:00:33] Checking for CVMFS
[2026-04-11 13:00:33] No cvmfs_config command found, will try listing directly
[2026-04-11 13:00:33] CVMFS is ok
[2026-04-11 13:00:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 13:00:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 13:00:33] Further information can be found at the LHC@home message board.
[2026-04-11 13:00:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 13:00:33] Checking for apptainer binary...
[2026-04-11 13:00:33] which: no apptainer in ((null))
[2026-04-11 13:00:33] apptainer is not installed, using version from CVMFS
[2026-04-11 13:00:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 13:00:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-11 13:00:33] apptainer works
[2026-04-11 13:00:33] Set ATHENA_PROC_NUMBER=12
[2026-04-11 13:00:33] Set ATHENA_CORE_NUMBER=12
[2026-04-11 13:00:33] Starting ATLAS job with PandaID=7072726843
[2026-04-11 13:00:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 13:29:53]  *** The last 200 lines of the pilot log: ***
[2026-04-11 13:29:53]  filetype=log
[2026-04-11 13:29:53]  guid=490a3a1d-69bc-43fb-a784-7888029313f8
[2026-04-11 13:29:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-11 13:29:53]  is_altstaged=None
[2026-04-11 13:29:53]  is_tar=False
[2026-04-11 13:29:53]  lfn=log.49263208._011604.job.log.tgz.1
[2026-04-11 13:29:53]  mtime=0
[2026-04-11 13:29:53]  protocol_id=None
[2026-04-11 13:29:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-11 13:29:53]  replicas=None
[2026-04-11 13:29:53]  scope=mc23_13p6TeV
[2026-04-11 13:29:53]  status=None
[2026-04-11 13:29:53]  status_code=0
[2026-04-11 13:29:53]  storage_token=
[2026-04-11 13:29:53]  surl=/var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072726843/log.49263208._011604.job.log.tgz.1
[2026-04-11 13:29:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/94/log.49263208._011604.job.log.tgz.1
[2026-04-11 13:29:53]  workdir=None
[2026-04-11 13:29:53] ]
[2026-04-11 13:29:53] 2026-04-11 11:28:43,104 | INFO     | transferring file log.49263208._011604.job.log.tgz.1 from /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072726843/log.49263208._011604.job.log.tgz.1 to /var/lib/
[2026-04-11 13:29:53] 2026-04-11 11:28:43,104 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072726843/log.49263208._011604.job.log.tgz.1 /var/lib/boinc/var/slot180/slots/1/
[2026-04-11 13:29:53] 2026-04-11 11:28:43,117 | INFO     | adding to output.list: log.49263208._011604.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/94/log.49263208._011604.job.log.tg
[2026-04-11 13:29:53] 2026-04-11 11:28:43,117 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-11 13:29:53] 2026-04-11 11:28:43,117 | INFO     | summary of transferred files:
[2026-04-11 13:29:53] 2026-04-11 11:28:43,117 | INFO     |  -- lfn=log.49263208._011604.job.log.tgz.1, status_code=0, status=transferred
[2026-04-11 13:29:53] 2026-04-11 11:28:43,117 | INFO     | stage-out finished correctly
[2026-04-11 13:29:53] 2026-04-11 11:28:43,684 | INFO     | monitor loop #129: job 0:7072726843 is in state 'finished'
[2026-04-11 13:29:53] 2026-04-11 11:28:43,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 13:29:53] 2026-04-11 11:28:46,187 | INFO     | monitor loop #130: job 0:7072726843 is in state 'finished'
[2026-04-11 13:29:53] 2026-04-11 11:28:46,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 13:29:53] 2026-04-11 11:28:46,642 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-11 13:29:53] 2026-04-11 11:28:48,690 | INFO     | monitor loop #131: job 0:7072726843 is in state 'finished'
[2026-04-11 13:29:53] 2026-04-11 11:28:48,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,517 | INFO     | job 7072726843 has state=finished
[2026-04-11 13:29:53] 2026-04-11 11:28:49,518 | INFO     | preparing for final server update for job 7072726843 in state='finished'
[2026-04-11 13:29:53] 2026-04-11 11:28:49,518 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072726843/jobReport.json
[2026-04-11 13:29:53] 2026-04-11 11:28:49,519 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/1/workernode_map.json
[2026-04-11 13:29:53] 2026-04-11 11:28:49,519 | INFO     | this job has now completed (state=finished)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,519 | INFO     | log transfer has been attempted: DONE
[2026-04-11 13:29:53] 2026-04-11 11:28:49,519 | INFO     | job 7072726843 has finished - writing final server update
[2026-04-11 13:29:53] 2026-04-11 11:28:49,519 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1346103/.job.ad'
[2026-04-11 13:29:53] 2026-04-11 11:28:49,520 | INFO     | total number of processed events: 400 (read)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,530 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072726843/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,530 | INFO     | extracted standard info from prmon json
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | fitting pss+swap vs Time
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | sum of square deviations: 2865170.0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | sum of deviations: 44606799.0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | mean x (centered): 0.0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | mean y: 2677366.8095238097
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | intersect: 2677366.8095238097
[2026-04-11 13:29:53] 2026-04-11 11:28:49,531 | INFO     | chi2: 0.00012316243870994759
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | current memory leak: 15.57 B/s (using 21 data points, chi2=0.00)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | could have reported an average CPU frequency of 3642 MHz (4 samples)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | ..............................
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . Timing measurements:
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . get job = 0 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . initial setup = 4 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . payload setup = 5 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . stage-in = 0 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . payload execution = 1656 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . stage-out = 0 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | . log creation = 0 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,532 | INFO     | ..............................
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | 
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | job summary report
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | --------------------------------------------------
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | PanDA job id: 7072726843
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | task id: 49263208
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | errors: (none)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | pilot state: finished 
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | transexitcode: 0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | exeerrorcode: 0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | exeerrordiag: 
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | exitcode: 0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | exitmsg: OK
[2026-04-11 13:29:53] 2026-04-11 11:28:49,562 | INFO     | cpuconsumptiontime: 17516 s
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | nevents: 400
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | neventsw: 0
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | pid: 2684541
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | pgrp: 2684541
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | corecount: 12
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | event service: False
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | sizes: {0: 2281530, 10: 2281530, 1666: 2306371, 1667: 2306370, 1668: 2315448, 1671: 2315504, 1674: 2315826}
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | --------------------------------------------------
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | 
[2026-04-11 13:29:53] 2026-04-11 11:28:49,563 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/1
[2026-04-11 13:29:53] 2026-04-11 11:28:49,581 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,581 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,581 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,581 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | job 7072726843 has completed (purged errors)
[2026-04-11 13:29:53] 2026-04-11 11:28:49,582 | INFO     | overall cleanup function is called
[2026-04-11 13:29:53] 2026-04-11 11:28:50,588 | INFO     | --- collectZombieJob: --- 10, [2684541]
[2026-04-11 13:29:53] 2026-04-11 11:28:50,588 | INFO     | zombie collector waiting for pid 2684541
[2026-04-11 13:29:53] 2026-04-11 11:28:50,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 13:29:53] 2026-04-11 11:28:50,588 | INFO     | collected zombie processes
[2026-04-11 13:29:53] 2026-04-11 11:28:50,588 | INFO     | will attempt to kill all subprocesses of pid=2684541
[2026-04-11 13:29:53] 2026-04-11 11:28:50,933 | INFO     | process IDs to be killed: [2684541] (in reverse order)
[2026-04-11 13:29:53] 2026-04-11 11:28:51,087 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 13:29:53] 2026-04-11 11:28:51,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 13:29:53] 2026-04-11 11:28:51,111 | INFO     | did not find any defunct processes belonging to 2684541
[2026-04-11 13:29:53] 2026-04-11 11:28:51,135 | INFO     | did not find any defunct processes belonging to 2684541
[2026-04-11 13:29:53] 2026-04-11 11:28:51,135 | INFO     | Ready for new job
[2026-04-11 13:29:53] 2026-04-11 11:28:51,136 | INFO     | **************************************
[2026-04-11 13:29:53] 2026-04-11 11:28:51,137 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 13:29:53] 2026-04-11 11:28:51,137 | INFO     | **************************************
[2026-04-11 13:29:53] 2026-04-11 11:28:51,137 | INFO     | 
[2026-04-11 13:29:53] 2026-04-11 11:28:51,143 | INFO     | architecture information:
[2026-04-11 13:29:53] 2026-04-11 11:28:51,143 | INFO     | executing command: cat /etc/os-release
[2026-04-11 13:29:53] 2026-04-11 11:28:51,159 | INFO     | cat /etc/os-release:
[2026-04-11 13:29:53] NAME="CentOS Linux"
[2026-04-11 13:29:53] VERSION="7 (Core)"
[2026-04-11 13:29:53] ID="centos"
[2026-04-11 13:29:53] ID_LIKE="rhel fedora"
[2026-04-11 13:29:53] VERSION_ID="7"
[2026-04-11 13:29:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 13:29:53] ANSI_COLOR="0;31"
[2026-04-11 13:29:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 13:29:53] HOME_URL="https://www.centos.org/"
[2026-04-11 13:29:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 13:29:53] 
[2026-04-11 13:29:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 13:29:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 13:29:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 13:29:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 13:29:53] 
[2026-04-11 13:29:53] 2026-04-11 11:28:51,159 | INFO     | **************************************
[2026-04-11 13:29:53] 2026-04-11 11:28:51,662 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/1
[2026-04-11 13:29:53] 2026-04-11 11:28:51,674 | INFO     | sufficient remaining disk space (185071566848 B)
[2026-04-11 13:29:53] 2026-04-11 11:28:51,674 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 13:29:53] 2026-04-11 11:28:51,674 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 13:29:53] 2026-04-11 11:28:51,674 | INFO     | update_server=False
[2026-04-11 13:29:53] 2026-04-11 11:28:51,675 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 13:29:53] 2026-04-11 11:28:51,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 13:29:53] 2026-04-11 11:28:51,700 | INFO     | all job control threads have been joined
[2026-04-11 13:29:53] 2026-04-11 11:28:51,725 | INFO     | all payload control threads have been joined
[2026-04-11 13:29:53] 2026-04-11 11:28:52,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 13:29:53] 2026-04-11 11:28:52,198 | INFO     | aborting loop
[2026-04-11 13:29:53] 2026-04-11 11:28:52,525 | INFO     | all data control threads have been joined
[2026-04-11 13:29:53] 2026-04-11 11:28:52,679 | INFO     | [job] retrieve thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:52,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 13:29:53] 2026-04-11 11:28:52,705 | INFO     | [job] control thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:52,730 | INFO     | [payload] control thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,132 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,202 | INFO     | [job] job monitor thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,430 | INFO     | [job] validate thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,530 | INFO     | [data] control thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,581 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,590 | INFO     | [payload] failed_post thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,680 | INFO     | [data] copytool_out thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,706 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:53,821 | INFO     | [data] copytool_in thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:54,096 | INFO     | [payload] validate_post thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:54,151 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:54,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 13:29:53] 2026-04-11 11:28:55,576 | INFO     | [job] queue monitor thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:28:56,701 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 13:29:53] 2026-04-11 11:29:22,735 | INFO     | PID=2678261 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 13:29:53] 2026-04-11 11:29:22,735 | INFO     | .. there are 15 such processes running
[2026-04-11 13:29:53] 2026-04-11 11:29:22,736 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 13:29:53] 2026-04-11 11:29:22,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 13:29:53] 2026-04-11 11:29:22,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 13:29:53] 2026-04-11 11:29:47,079 | INFO     | [monitor] cgroup control has ended
[2026-04-11 13:29:53] 2026-04-11 11:29:48,106 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23445697664832)>', '<ExcThread(monitor, started 23445460236032)>']
[2026-04-11 13:29:53] 2026-04-11 11:29:48,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 13:29:53] 2026-04-11 11:29:48,862 | INFO     | [monitor] control thread has ended
[2026-04-11 13:29:53] 2026-04-11 11:29:53,107 | INFO     | all workflow threads have been joined
[2026-04-11 13:29:53] 2026-04-11 11:29:53,107 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 13:29:53] 2026-04-11 11:29:53,107 | INFO     | traces error code: 0
[2026-04-11 13:29:53] 2026-04-11 11:29:53,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 13:29:53] 2026-04-11 11:29:53,219 [wrapper] ==== pilot stdout END ====
[2026-04-11 13:29:53] 2026-04-11 11:29:53,221 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 13:29:53] 2026-04-11 11:29:53,223 [wrapper] pilotpid: 2678261
[2026-04-11 13:29:53] 2026-04-11 11:29:53,225 [wrapper] Pilot exit status: 0
[2026-04-11 13:29:53] 2026-04-11 11:29:53,231 [wrapper] pandaids: 7072726843
[2026-04-11 13:29:53] 2026-04-11 11:29:53,326 [wrapper] cleanup supervisor_pilot 2834416 2678262
[2026-04-11 13:29:53] 2026-04-11 11:29:53,329 [wrapper] Test setup, not cleaning
[2026-04-11 13:29:53] 2026-04-11 11:29:53,331 [wrapper] apfmon messages muted
[2026-04-11 13:29:53] 2026-04-11 11:29:53,332 [wrapper] ==== wrapper stdout END ====
[2026-04-11 13:29:53] 2026-04-11 11:29:53,335 [wrapper] ==== wrapper stderr END ====
[2026-04-11 13:29:53]  *** Error codes and diagnostics ***
[2026-04-11 13:29:53]     "exeErrorCode": 0,
[2026-04-11 13:29:53]     "pilotErrorCode": 0,
[2026-04-11 13:29:53]  *** Listing of results directory ***
[2026-04-11 13:29:53] total 411156
[2026-04-11 13:29:53] -rwx------. 1 boinc boinc     36322 Mar 31 22:57 runpilot2-wrapper.sh
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc    644190 Apr 10 07:14 pilot3.tar.gz
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc      5094 Apr 10 07:26 queuedata.json
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc       100 Apr 11 13:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 13:29:53] -rwxr-xr-x. 1 boinc boinc      7986 Apr 11 13:00 run_atlas
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc       105 Apr 11 13:00 job.xml
[2026-04-11 13:29:53] -rw-r--r--. 2 boinc boinc 223304853 Apr 11 13:00 EVNT.49263206._000514.pool.root.1
[2026-04-11 13:29:53] -rw-r--r--. 2 boinc boinc     15665 Apr 11 13:00 start_atlas.sh
[2026-04-11 13:29:53] drwxrwx--x. 2 boinc boinc      4096 Apr 11 13:00 shared
[2026-04-11 13:29:53] -rw-r--r--. 2 boinc boinc    656926 Apr 11 13:00 input.tar.gz
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc      6628 Apr 11 13:00 init_data.xml
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc         0 Apr 11 13:00 boinc_lockfile
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc      2575 Apr 11 13:00 pandaJob.out
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc    997836 Apr 11 13:00 agis_schedconf.cvmfs.json
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc   1511579 Apr 11 13:00 agis_ddmendpoints.agis.ALL.json
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc       445 Apr 11 13:00 workernode_map.json
[2026-04-11 13:29:53] drwx------. 5 boinc boinc      4096 Apr 11 13:00 pilot3
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc       487 Apr 11 13:28 boinc_task_state.xml
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc 192606056 Apr 11 13:28 HITS.49263208._011604.pool.root.1
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc      1030 Apr 11 13:28 memory_monitor_summary.json
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc    321313 Apr 11 13:28 log.49263208._011604.job.log.tgz.1
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc      6381 Apr 11 13:28 heartbeat_new.json
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc      6272 Apr 11 13:28 heartbeat.json
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc        95 Apr 11 13:29 pilot_heartbeat.json
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc      8192 Apr 11 13:29 boinc_mmap_file
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc        27 Apr 11 13:29 wrapper_checkpoint.txt
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc      4830 Apr 11 13:29 pilotlog.txt
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc    204971 Apr 11 13:29 log.49263208._011604.job.log.1
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc       357 Apr 11 13:29 output.list
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc       410 Apr 11 13:29 runtime_log
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc    542720 Apr 11 13:29 result.tar.gz
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc      8845 Apr 11 13:29 runtime_log.err
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc       661 Apr 11 13:29 3527ba39486a.diag
[2026-04-11 13:29:53] -rw-r--r--. 1 boinc boinc     21156 Apr 11 13:29 stderr.txt
[2026-04-11 13:29:53] HITS file was successfully produced:
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc 192606056 Apr 11 13:28 shared/HITS.pool.root.1
[2026-04-11 13:29:53]  *** Contents of shared directory: ***
[2026-04-11 13:29:53] total 407364
[2026-04-11 13:29:53] -rw-r--r--. 2 boinc boinc 223304853 Apr 11 13:00 ATLAS.root_0
[2026-04-11 13:29:53] -rw-r--r--. 2 boinc boinc     15665 Apr 11 13:00 start_atlas.sh
[2026-04-11 13:29:53] -rw-r--r--. 2 boinc boinc    656926 Apr 11 13:00 input.tar.gz
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc 192606056 Apr 11 13:28 HITS.pool.root.1
[2026-04-11 13:29:53] -rw-------. 1 boinc boinc    542720 Apr 11 13:29 result.tar.gz
13:29:54 (2673609): run_atlas exited; CPU time 17554.966236
13:29:54 (2673609): called boinc_finish(0)

</stderr_txt>
]]>

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