Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:04:35 (8799): wrapper (7.7.26015): starting
23:04:35 (8799): wrapper: running run_atlas (--nthreads 8)
[2026-04-10 23:04:35] Arguments: --nthreads 8
[2026-04-10 23:04:35] Threads: 8
[2026-04-10 23:04:35] Checking for CVMFS
[2026-04-10 23:04:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 23:04:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 23:04:39] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 23:04:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 23:04:41] 2.11.2.0 27056 13408 102500 158315 1 54 20061682 25165825 188 130560 0 3409579 99.489 4119179 7526 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-10 23:04:41] CVMFS is ok
[2026-04-10 23:04:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 23:04:41] Checking for apptainer binary...
[2026-04-10 23:04:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 23:04:41] Running /usr/bin/apptainer --version
[2026-04-10 23:04:41] apptainer version 1.3.2-1.el7
[2026-04-10 23:04:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 23:04:57] cg-vwn402.simple-grid.lan
[2026-04-10 23:04:57] apptainer works
[2026-04-10 23:04:57] Set ATHENA_PROC_NUMBER=8
[2026-04-10 23:04:57] Set ATHENA_CORE_NUMBER=8
[2026-04-10 23:04:57] Starting ATLAS job with PandaID=7083775480
[2026-04-10 23:04:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 03:03:36]  *** The last 200 lines of the pilot log: ***
[2026-04-11 03:03:36] 2026-04-11 01:02:33,341 | INFO     | this job has now completed (state=finished)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,341 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,341 | INFO     | log transfer has been attempted: DONE
[2026-04-11 03:03:36] 2026-04-11 01:02:33,341 | INFO     | job 7083775480 has finished - writing final server update
[2026-04-11 03:03:36] 2026-04-11 01:02:33,342 | INFO     | total number of processed events: 400 (read)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,344 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7083775480/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,345 | INFO     | extracted standard info from prmon json
[2026-04-11 03:03:36] 2026-04-11 01:02:33,345 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 03:03:36] 2026-04-11 01:02:33,345 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 03:03:36] 2026-04-11 01:02:33,345 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 03:03:36] 2026-04-11 01:02:33,354 | INFO     | fitting pss+swap vs Time
[2026-04-11 03:03:36] 2026-04-11 01:02:33,354 | INFO     | sum of square deviations: 3438620752.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,356 | INFO     | sum of deviations: 92511802242.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,356 | INFO     | mean x (centered): 0.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,357 | INFO     | mean y: 2397298.6726457397
[2026-04-11 03:03:36] 2026-04-11 01:02:33,357 | INFO     | intersect: 2397298.6726457397
[2026-04-11 03:03:36] 2026-04-11 01:02:33,357 | INFO     | chi2: 9.364880695040345
[2026-04-11 03:03:36] 2026-04-11 01:02:33,358 | INFO     | sum of square deviations: 3212467674.5
[2026-04-11 03:03:36] 2026-04-11 01:02:33,360 | INFO     | sum of deviations: 119561463877.99998
[2026-04-11 03:03:36] 2026-04-11 01:02:33,360 | INFO     | mean x (centered): 0.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,360 | INFO     | mean y: 2415266.0733944955
[2026-04-11 03:03:36] 2026-04-11 01:02:33,360 | INFO     | intersect: 2415266.0733944955
[2026-04-11 03:03:36] 2026-04-11 01:02:33,361 | INFO     | chi2: 7.922763921170064
[2026-04-11 03:03:36] 2026-04-11 01:02:33,361 | INFO     | current chi2=7.922763921170064 (change=15.399200703475364 %)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,361 | INFO     | right removable region: 217
[2026-04-11 03:03:36] 2026-04-11 01:02:33,361 | INFO     | sum of square deviations: 3212467674.5
[2026-04-11 03:03:36] 2026-04-11 01:02:33,363 | INFO     | sum of deviations: 13355182863.999996
[2026-04-11 03:03:36] 2026-04-11 01:02:33,363 | INFO     | mean x (centered): 0.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,363 | INFO     | mean y: 2450659.7339449544
[2026-04-11 03:03:36] 2026-04-11 01:02:33,363 | INFO     | intersect: 2450659.7339449544
[2026-04-11 03:03:36] 2026-04-11 01:02:33,364 | INFO     | chi2: 4.001365524422977
[2026-04-11 03:03:36] 2026-04-11 01:02:33,364 | INFO     | current chi2=4.001365524422977 (change=57.27264815512165 %)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,364 | INFO     | sum of square deviations: 2996454322.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,366 | INFO     | sum of deviations: -37489838720.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,366 | INFO     | mean x (centered): 0.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,366 | INFO     | mean y: 2486433.9342723005
[2026-04-11 03:03:36] 2026-04-11 01:02:33,367 | INFO     | intersect: 2486433.9342723005
[2026-04-11 03:03:36] 2026-04-11 01:02:33,367 | INFO     | chi2: 1.808621356939512
[2026-04-11 03:03:36] 2026-04-11 01:02:33,367 | INFO     | current chi2=1.808621356939512 (change=54.79989653781187 %)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,368 | INFO     | sum of square deviations: 2790348132.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,369 | INFO     | sum of deviations: -43266978926.5
[2026-04-11 03:03:36] 2026-04-11 01:02:33,369 | INFO     | mean x (centered): 0.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,370 | INFO     | mean y: 2490669.331730769
[2026-04-11 03:03:36] 2026-04-11 01:02:33,370 | INFO     | intersect: 2490669.331730769
[2026-04-11 03:03:36] 2026-04-11 01:02:33,370 | INFO     | chi2: 1.7537481004422824
[2026-04-11 03:03:36] 2026-04-11 01:02:33,370 | INFO     | current chi2=1.7537481004422824 (change=3.0339825573045482 %)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,370 | INFO     | left removable region: 15
[2026-04-11 03:03:36] 2026-04-11 01:02:33,371 | INFO     | sum of square deviations: 2555770710.5
[2026-04-11 03:03:36] 2026-04-11 01:02:33,372 | INFO     | sum of deviations: -15043225189.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,372 | INFO     | mean x (centered): 0.0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,373 | INFO     | mean y: 2512267.623762376
[2026-04-11 03:03:36] 2026-04-11 01:02:33,373 | INFO     | intersect: 2512267.623762376
[2026-04-11 03:03:36] 2026-04-11 01:02:33,373 | INFO     | chi2: 0.11471285389121214
[2026-04-11 03:03:36] 2026-04-11 01:02:33,373 | INFO     | current memory leak: -5.89 B/s (using 202 data points, chi2=0.11)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,374 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,374 | INFO     | ..............................
[2026-04-11 03:03:36] 2026-04-11 01:02:33,374 | INFO     | . Timing measurements:
[2026-04-11 03:03:36] 2026-04-11 01:02:33,374 | INFO     | . get job = 0 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | . initial setup = 116 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | . payload setup = 184 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | . stage-in = 0 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | . payload execution = 13681 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | . stage-out = 4 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | . log creation = 1 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,375 | INFO     | ..............................
[2026-04-11 03:03:36] 2026-04-11 01:02:33,490 | INFO     | 
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | job summary report
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | --------------------------------------------------
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | PanDA job id: 7083775480
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | task id: 49263191
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | errors: (none)
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | pilot state: finished 
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | transexitcode: 0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | exeerrorcode: 0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | exeerrordiag: 
[2026-04-11 03:03:36] 2026-04-11 01:02:33,491 | INFO     | exitcode: 0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | exitmsg: OK
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | cpuconsumptiontime: 61051 s
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | nevents: 400
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | neventsw: 0
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | pid: 17221
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | pgrp: 17221
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | corecount: 8
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | event service: False
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | sizes: {0: 2279613, 1: 2267980, 2: 2281498, 12: 2281526, 13870: 2311806, 13875: 2320804, 13876: 2320988, 13879: 2321182}
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | --------------------------------------------------
[2026-04-11 03:03:36] 2026-04-11 01:02:33,492 | INFO     | 
[2026-04-11 03:03:36] 2026-04-11 01:02:33,493 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-11 03:03:36] 2026-04-11 01:02:34,079 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,080 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,080 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,080 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | job 7083775480 has completed (purged errors)
[2026-04-11 03:03:36] 2026-04-11 01:02:34,082 | INFO     | overall cleanup function is called
[2026-04-11 03:03:36] 2026-04-11 01:02:35,092 | INFO     | --- collectZombieJob: --- 10, [17221]
[2026-04-11 03:03:36] 2026-04-11 01:02:35,092 | INFO     | zombie collector waiting for pid 17221
[2026-04-11 03:03:36] 2026-04-11 01:02:35,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 03:03:36] 2026-04-11 01:02:35,093 | INFO     | collected zombie processes
[2026-04-11 03:03:36] 2026-04-11 01:02:35,093 | INFO     | will attempt to kill all subprocesses of pid=17221
[2026-04-11 03:03:36] 2026-04-11 01:02:35,178 | INFO     | process IDs to be killed: [17221] (in reverse order)
[2026-04-11 03:03:36] 2026-04-11 01:02:36,157 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 03:03:36] 2026-04-11 01:02:36,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 03:03:36] 2026-04-11 01:02:36,160 | INFO     | did not find any defunct processes belonging to 17221
[2026-04-11 03:03:36] 2026-04-11 01:02:36,162 | INFO     | did not find any defunct processes belonging to 17221
[2026-04-11 03:03:36] 2026-04-11 01:02:36,162 | INFO     | Ready for new job
[2026-04-11 03:03:36] 2026-04-11 01:02:36,164 | INFO     | **************************************
[2026-04-11 03:03:36] 2026-04-11 01:02:36,164 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 03:03:36] 2026-04-11 01:02:36,164 | INFO     | **************************************
[2026-04-11 03:03:36] 2026-04-11 01:02:36,164 | INFO     | 
[2026-04-11 03:03:36] 2026-04-11 01:02:36,165 | INFO     | pilot is running in a VM
[2026-04-11 03:03:36] 2026-04-11 01:02:36,165 | INFO     | architecture information:
[2026-04-11 03:03:36] 2026-04-11 01:02:36,176 | INFO     | executing command: cat /etc/os-release
[2026-04-11 03:03:36] 2026-04-11 01:02:36,540 | INFO     | cat /etc/os-release:
[2026-04-11 03:03:36] NAME="CentOS Linux"
[2026-04-11 03:03:36] VERSION="7 (Core)"
[2026-04-11 03:03:36] ID="centos"
[2026-04-11 03:03:36] ID_LIKE="rhel fedora"
[2026-04-11 03:03:36] VERSION_ID="7"
[2026-04-11 03:03:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 03:03:36] ANSI_COLOR="0;31"
[2026-04-11 03:03:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 03:03:36] HOME_URL="https://www.centos.org/"
[2026-04-11 03:03:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 03:03:36] 
[2026-04-11 03:03:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 03:03:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 03:03:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 03:03:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 03:03:36] 
[2026-04-11 03:03:36] 2026-04-11 01:02:36,541 | INFO     | **************************************
[2026-04-11 03:03:36] 2026-04-11 01:02:37,044 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-11 03:03:36] 2026-04-11 01:02:37,289 | INFO     | sufficient remaining disk space (497054384128 B)
[2026-04-11 03:03:36] 2026-04-11 01:02:37,289 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 03:03:36] 2026-04-11 01:02:37,290 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 03:03:36] 2026-04-11 01:02:37,290 | INFO     | update_server=False
[2026-04-11 03:03:36] 2026-04-11 01:02:37,290 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 03:03:36] 2026-04-11 01:02:37,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 03:03:36] 2026-04-11 01:02:37,290 | INFO     | aborting loop
[2026-04-11 03:03:36] 2026-04-11 01:02:37,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 03:03:36] 2026-04-11 01:02:37,598 | INFO     | all payload control threads have been joined
[2026-04-11 03:03:36] 2026-04-11 01:02:37,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 03:03:36] 2026-04-11 01:02:38,253 | INFO     | all data control threads have been joined
[2026-04-11 03:03:36] 2026-04-11 01:02:38,299 | INFO     | [job] retrieve thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:38,300 | INFO     | [job] job monitor thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:38,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 03:03:36] 2026-04-11 01:02:38,604 | INFO     | [payload] control thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:38,676 | INFO     | all job control threads have been joined
[2026-04-11 03:03:36] 2026-04-11 01:02:38,692 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:38,954 | INFO     | [payload] failed_post thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,172 | INFO     | [payload] validate_post thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,259 | INFO     | [data] control thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,318 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,470 | INFO     | [job] validate thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,514 | INFO     | [job] queue monitor thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,617 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,644 | INFO     | [data] copytool_in thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:39,683 | INFO     | [job] control thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:40,000 | INFO     | [data] copytool_out thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:02:41,300 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 03:03:36] 2026-04-11 01:03:06,138 | INFO     | PID=12786 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 03:03:36] 2026-04-11 01:03:06,138 | INFO     | .. there are 2 such processes running
[2026-04-11 03:03:36] 2026-04-11 01:03:06,139 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 03:03:36] 2026-04-11 01:03:06,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 03:03:36] 2026-04-11 01:03:06,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 03:03:36] 2026-04-11 01:03:24,906 | INFO     | [monitor] cgroup control has ended
[2026-04-11 03:03:36] 2026-04-11 01:03:25,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145489430336)>', '<ExcThread(monitor, started 140145271105280)>']
[2026-04-11 03:03:36] 2026-04-11 01:03:26,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 03:03:36] 2026-04-11 01:03:26,259 | INFO     | [monitor] control thread has ended
[2026-04-11 03:03:36] 2026-04-11 01:03:31,024 | INFO     | all workflow threads have been joined
[2026-04-11 03:03:36] 2026-04-11 01:03:31,024 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 03:03:36] 2026-04-11 01:03:31,024 | INFO     | traces error code: 0
[2026-04-11 03:03:36] 2026-04-11 01:03:31,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 03:03:36] 2026-04-11 01:03:31,369 [wrapper] ==== pilot stdout END ====
[2026-04-11 03:03:36] 2026-04-11 01:03:31,459 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 03:03:36] 2026-04-11 01:03:31,592 [wrapper] pilotpid: 12786
[2026-04-11 03:03:36] 2026-04-11 01:03:31,727 [wrapper] Pilot exit status: 0
[2026-04-11 03:03:36] 2026-04-11 01:03:32,294 [wrapper] pandaids: 7083775480
[2026-04-11 03:03:36] 2026-04-11 01:03:33,352 [wrapper] cleanup supervisor_pilot  6767 12787
[2026-04-11 03:03:36] 2026-04-11 01:03:33,455 [wrapper] Test setup, not cleaning
[2026-04-11 03:03:36] 2026-04-11 01:03:33,571 [wrapper] apfmon messages muted
[2026-04-11 03:03:36] 2026-04-11 01:03:33,650 [wrapper] ==== wrapper stdout END ====
[2026-04-11 03:03:36] 2026-04-11 01:03:33,787 [wrapper] ==== wrapper stderr END ====
[2026-04-11 03:03:36]  *** Error codes and diagnostics ***
[2026-04-11 03:03:36]     "exeErrorCode": 0,
[2026-04-11 03:03:36]     "pilotErrorCode": 0,
[2026-04-11 03:03:36]  *** Listing of results directory ***
[2026-04-11 03:03:36] total 418600
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc    644190 Apr 10 11:24 pilot3.tar.gz
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc      5094 Apr 10 11:50 queuedata.json
[2026-04-11 03:03:36] -rwx------. 1 boinc boinc     36322 Apr 10 11:51 runpilot2-wrapper.sh
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc       100 Apr 10 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 03:03:36] -rwxr-xr-x. 1 boinc boinc      7986 Apr 10 23:04 run_atlas
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc       105 Apr 10 23:04 job.xml
[2026-04-11 03:03:36] -rw-r--r--. 2 boinc boinc 223639436 Apr 10 23:04 EVNT.49263189._000678.pool.root.1
[2026-04-11 03:03:36] drwxrwx--x. 2 boinc boinc        68 Apr 10 23:04 shared
[2026-04-11 03:03:36] -rw-r--r--. 2 boinc boinc    656936 Apr 10 23:04 input.tar.gz
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc      6305 Apr 10 23:04 init_data.xml
[2026-04-11 03:03:36] -rw-r--r--. 2 boinc boinc     15665 Apr 10 23:04 start_atlas.sh
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc         0 Apr 10 23:04 boinc_lockfile
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc      2577 Apr 10 23:04 pandaJob.out
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc       415 Apr 10 23:10 workernode_map.json
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc    997860 Apr 10 23:11 agis_schedconf.cvmfs.json
[2026-04-11 03:03:36] drwx------. 5 boinc boinc      4096 Apr 10 23:11 pilot3
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc 197582227 Apr 11 03:00 HITS.49263191._037315.pool.root.1
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc       488 Apr 11 03:01 boinc_task_state.xml
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc      1020 Apr 11 03:02 memory_monitor_summary.json
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc   1511579 Apr 11 03:02 agis_ddmendpoints.agis.ALL.json
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc    403607 Apr 11 03:02 log.49263191._037315.job.log.tgz.1
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc        95 Apr 11 03:02 pilot_heartbeat.json
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc      6347 Apr 11 03:02 heartbeat_new.json
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc      6238 Apr 11 03:02 heartbeat.json
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc      8192 Apr 11 03:03 boinc_mmap_file
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc        28 Apr 11 03:03 wrapper_checkpoint.txt
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc      4879 Apr 11 03:03 pilotlog.txt
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc   1285915 Apr 11 03:03 log.49263191._037315.job.log.1
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc       357 Apr 11 03:03 output.list
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc       410 Apr 11 03:03 runtime_log
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc   1710080 Apr 11 03:03 result.tar.gz
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc      8438 Apr 11 03:03 runtime_log.err
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc       655 Apr 11 03:03 c806c8d7f2ef.diag
[2026-04-11 03:03:36] -rw-r--r--. 1 boinc boinc     20627 Apr 11 03:03 stderr.txt
[2026-04-11 03:03:36] HITS file was successfully produced:
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc 197582227 Apr 11 03:00 shared/HITS.pool.root.1
[2026-04-11 03:03:36]  *** Contents of shared directory: ***
[2026-04-11 03:03:36] total 413684
[2026-04-11 03:03:36] -rw-r--r--. 2 boinc boinc 223639436 Apr 10 23:04 ATLAS.root_0
[2026-04-11 03:03:36] -rw-r--r--. 2 boinc boinc    656936 Apr 10 23:04 input.tar.gz
[2026-04-11 03:03:36] -rw-r--r--. 2 boinc boinc     15665 Apr 10 23:04 start_atlas.sh
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc 197582227 Apr 11 03:00 HITS.pool.root.1
[2026-04-11 03:03:36] -rw-------. 1 boinc boinc   1710080 Apr 11 03:03 result.tar.gz
03:03:38 (8799): run_atlas exited; CPU time 61196.642824
03:03:38 (8799): called boinc_finish(0)

</stderr_txt>
]]>

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