Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:41:54 (2695839): wrapper (7.7.26015): starting
10:41:54 (2695839): wrapper: running run_atlas (--nthreads 5)
[2026-04-10 10:41:54] Arguments: --nthreads 5
[2026-04-10 10:41:54] Threads: 5
[2026-04-10 10:41:54] Checking for CVMFS
[2026-04-10 10:41:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 10:41:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 10:41:55] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 10:41:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 10:41:56] 2.11.0.0 1841984 1210 88932 158306 2 94 3775767 4096001 6408 130560 0 3605266 99.934 284329 1629 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-04-10 10:41:56] CVMFS is ok
[2026-04-10 10:41:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 10:41:56] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-10 10:41:56] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-10 10:41:56] Further information can be found at the LHC@home message board.
[2026-04-10 10:41:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 10:41:56] Checking for apptainer binary...
[2026-04-10 10:41:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 10:41:56] Running /usr/bin/apptainer --version
[2026-04-10 10:41:56] apptainer version 1.4.5
[2026-04-10 10:41:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 10:41:56] x32-linux4
[2026-04-10 10:41:56] apptainer works
[2026-04-10 10:41:56] Set ATHENA_PROC_NUMBER=5
[2026-04-10 10:41:56] Set ATHENA_CORE_NUMBER=5
[2026-04-10 10:41:56] Starting ATLAS job with PandaID=7083313445
[2026-04-10 10:41:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 12:40:41]  *** The last 200 lines of the pilot log: ***
[2026-04-10 12:40:41] 2026-04-10 16:39:40,196 | INFO     | preparing for final server update for job 7083313445 in state='finished'
[2026-04-10 12:40:41] 2026-04-10 16:39:40,196 | INFO     | reading metadata from: /var/lib/boinc-client/slots/6/PanDA_Pilot-7083313445/jobReport.json
[2026-04-10 12:40:41] 2026-04-10 16:39:40,199 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/6/workernode_map.json
[2026-04-10 12:40:41] 2026-04-10 16:39:40,200 | INFO     | this job has now completed (state=finished)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,200 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,200 | INFO     | log transfer has been attempted: DONE
[2026-04-10 12:40:41] 2026-04-10 16:39:40,200 | INFO     | job 7083313445 has finished - writing final server update
[2026-04-10 12:40:41] 2026-04-10 16:39:40,200 | INFO     | total number of processed events: 400 (read)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,211 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-7083313445/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,211 | INFO     | extracted standard info from prmon json
[2026-04-10 12:40:41] 2026-04-10 16:39:40,211 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 12:40:41] 2026-04-10 16:39:40,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 12:40:41] 2026-04-10 16:39:40,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 12:40:41] 2026-04-10 16:39:40,213 | INFO     | fitting pss+swap vs Time
[2026-04-10 12:40:41] 2026-04-10 16:39:40,216 | INFO     | sum of square deviations: 471562330.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,217 | INFO     | sum of deviations: -3307473191.9999995
[2026-04-10 12:40:41] 2026-04-10 16:39:40,217 | INFO     | mean x (centered): 0.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,217 | INFO     | mean y: 2384818.0608695652
[2026-04-10 12:40:41] 2026-04-10 16:39:40,217 | INFO     | intersect: 2384818.0608695652
[2026-04-10 12:40:41] 2026-04-10 16:39:40,217 | INFO     | chi2: 1.4707502482775632
[2026-04-10 12:40:41] 2026-04-10 16:39:40,217 | INFO     | sum of square deviations: 412686807.5
[2026-04-10 12:40:41] 2026-04-10 16:39:40,218 | INFO     | sum of deviations: -2993893725.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,218 | INFO     | mean x (centered): 0.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,218 | INFO     | mean y: 2385630.8363636364
[2026-04-10 12:40:41] 2026-04-10 16:39:40,221 | INFO     | intersect: 2385630.8363636364
[2026-04-10 12:40:41] 2026-04-10 16:39:40,221 | INFO     | chi2: 1.470088085959173
[2026-04-10 12:40:41] 2026-04-10 16:39:40,221 | INFO     | current chi2=1.470088085959173 (change=0.04502207762097621 %)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,221 | INFO     | right removable region: 109
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | sum of square deviations: 412686807.5
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | sum of deviations: -16381124494.5
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | mean x (centered): 0.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | mean y: 2417718.2636363637
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | intersect: 2417718.2636363637
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | chi2: 0.1030402665214671
[2026-04-10 12:40:41] 2026-04-10 16:39:40,222 | INFO     | current chi2=0.1030402665214671 (change=92.99403371563999 %)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | sum of square deviations: 358927660.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | sum of deviations: -12187721798.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | mean x (centered): 0.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | mean y: 2405798.819047619
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | intersect: 2405798.819047619
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | chi2: 0.08837547960000985
[2026-04-10 12:40:41] 2026-04-10 16:39:40,223 | INFO     | current chi2=0.08837547960000985 (change=14.232093351973255 %)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,224 | INFO     | left removable region: 10
[2026-04-10 12:40:41] 2026-04-10 16:39:40,224 | INFO     | sum of square deviations: 300842850.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,224 | INFO     | sum of deviations: -11441001583.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,226 | INFO     | mean x (centered): 0.0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,226 | INFO     | mean y: 2408154.0808080807
[2026-04-10 12:40:41] 2026-04-10 16:39:40,226 | INFO     | intersect: 2408154.0808080807
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | chi2: 0.08318731727461758
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | current memory leak: -38.03 B/s (using 99 data points, chi2=0.08)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | could have reported an average CPU frequency of 3823 MHz (7 samples)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | ..............................
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . Timing measurements:
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . get job = 0 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . initial setup = 9 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . payload setup = 15 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . stage-in = 0 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . payload execution = 7004 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,227 | INFO     | . stage-out = 0 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,228 | INFO     | . log creation = 0 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,228 | INFO     | ..............................
[2026-04-10 12:40:41] 2026-04-10 16:39:40,435 | INFO     | 
[2026-04-10 12:40:41] 2026-04-10 16:39:40,435 | INFO     | job summary report
[2026-04-10 12:40:41] 2026-04-10 16:39:40,435 | INFO     | --------------------------------------------------
[2026-04-10 12:40:41] 2026-04-10 16:39:40,435 | INFO     | PanDA job id: 7083313445
[2026-04-10 12:40:41] 2026-04-10 16:39:40,435 | INFO     | task id: 49263200
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | errors: (none)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | pilot state: finished 
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | transexitcode: 0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | exeerrorcode: 0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | exeerrordiag: 
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | exitcode: 0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | exitmsg: OK
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | cpuconsumptiontime: 27649 s
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | nevents: 400
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | neventsw: 0
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | pid: 2704600
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | pgrp: 2704600
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | corecount: 5
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | event service: False
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | sizes: {0: 2279038, 1: 2281531, 12: 2281531, 7023: 2308798, 7024: 2317866, 7025: 2318004}
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | --------------------------------------------------
[2026-04-10 12:40:41] 2026-04-10 16:39:40,436 | INFO     | 
[2026-04-10 12:40:41] 2026-04-10 16:39:40,437 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | job 7083313445 has completed (purged errors)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,470 | INFO     | overall cleanup function is called
[2026-04-10 12:40:41] 2026-04-10 16:39:40,478 | WARNING  | process 2704600 can no longer be monitored (due to stat problems) - aborting
[2026-04-10 12:40:41] 2026-04-10 16:39:40,643 | INFO     | using path: /var/lib/boinc-client/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 12:40:41] 2026-04-10 16:39:40,814 | INFO     | number of running child processes to parent process 2704600: 1
[2026-04-10 12:40:41] 2026-04-10 16:39:40,814 | INFO     | maximum number of monitored processes: 6
[2026-04-10 12:40:41] 2026-04-10 16:39:40,815 | INFO     | aborting job monitoring since job object (job id=7083313445) has expired
[2026-04-10 12:40:41] 2026-04-10 16:39:41,480 | INFO     | --- collectZombieJob: --- 10, [2704600]
[2026-04-10 12:40:41] 2026-04-10 16:39:41,480 | INFO     | zombie collector waiting for pid 2704600
[2026-04-10 12:40:41] 2026-04-10 16:39:41,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 12:40:41] 2026-04-10 16:39:41,481 | INFO     | collected zombie processes
[2026-04-10 12:40:41] 2026-04-10 16:39:41,481 | INFO     | will attempt to kill all subprocesses of pid=2704600
[2026-04-10 12:40:41] 2026-04-10 16:39:41,739 | INFO     | process IDs to be killed: [2704600] (in reverse order)
[2026-04-10 12:40:41] 2026-04-10 16:39:41,847 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 12:40:41] 2026-04-10 16:39:41,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 12:40:41] 2026-04-10 16:39:41,855 | INFO     | did not find any defunct processes belonging to 2704600
[2026-04-10 12:40:41] 2026-04-10 16:39:41,862 | INFO     | did not find any defunct processes belonging to 2704600
[2026-04-10 12:40:41] 2026-04-10 16:39:41,862 | INFO     | Ready for new job
[2026-04-10 12:40:41] 2026-04-10 16:39:41,866 | INFO     | **************************************
[2026-04-10 12:40:41] 2026-04-10 16:39:41,867 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 12:40:41] 2026-04-10 16:39:41,867 | INFO     | **************************************
[2026-04-10 12:40:41] 2026-04-10 16:39:41,867 | INFO     | 
[2026-04-10 12:40:41] 2026-04-10 16:39:41,868 | INFO     | architecture information:
[2026-04-10 12:40:41] 2026-04-10 16:39:41,871 | INFO     | executing command: cat /etc/os-release
[2026-04-10 12:40:41] 2026-04-10 16:39:41,894 | INFO     | cat /etc/os-release:
[2026-04-10 12:40:41] NAME="CentOS Linux"
[2026-04-10 12:40:41] VERSION="7 (Core)"
[2026-04-10 12:40:41] ID="centos"
[2026-04-10 12:40:41] ID_LIKE="rhel fedora"
[2026-04-10 12:40:41] VERSION_ID="7"
[2026-04-10 12:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 12:40:41] ANSI_COLOR="0;31"
[2026-04-10 12:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 12:40:41] HOME_URL="https://www.centos.org/"
[2026-04-10 12:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 12:40:41] 
[2026-04-10 12:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 12:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 12:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 12:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 12:40:41] 
[2026-04-10 12:40:41] 2026-04-10 16:39:41,894 | INFO     | **************************************
[2026-04-10 12:40:41] 2026-04-10 16:39:42,396 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | INFO     | sufficient remaining disk space (140075073536 B)
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | INFO     | update_server=False
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 12:40:41] 2026-04-10 16:39:42,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 12:40:41] 2026-04-10 16:39:42,423 | INFO     | aborting loop
[2026-04-10 12:40:41] 2026-04-10 16:39:42,493 | INFO     | all payload control threads have been joined
[2026-04-10 12:40:41] 2026-04-10 16:39:42,508 | INFO     | all job control threads have been joined
[2026-04-10 12:40:41] 2026-04-10 16:39:42,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 12:40:41] 2026-04-10 16:39:42,867 | INFO     | all data control threads have been joined
[2026-04-10 12:40:41] 2026-04-10 16:39:43,427 | INFO     | [job] job monitor thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:43,428 | INFO     | [job] retrieve thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:43,498 | INFO     | [payload] control thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:43,513 | INFO     | [job] control thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:43,654 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:43,835 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:43,872 | INFO     | [data] control thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,056 | INFO     | [data] copytool_in thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,094 | INFO     | [payload] validate_post thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,156 | INFO     | [payload] failed_post thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,165 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,576 | INFO     | [job] validate thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,825 | INFO     | [data] copytool_out thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:44,857 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:45,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 12:40:41] 2026-04-10 16:39:46,384 | INFO     | [job] queue monitor thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:39:46,428 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 12:40:41] 2026-04-10 16:40:12,556 | INFO     | PID=2700024 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 12:40:41] 2026-04-10 16:40:12,556 | INFO     | .. there are 8 such processes running
[2026-04-10 12:40:41] 2026-04-10 16:40:12,557 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 12:40:41] 2026-04-10 16:40:12,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 12:40:41] 2026-04-10 16:40:12,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 12:40:41] 2026-04-10 16:40:35,022 | INFO     | [monitor] cgroup control has ended
[2026-04-10 12:40:41] 2026-04-10 16:40:36,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130084708472640)>', '<ExcThread(monitor, started 130084082018048)>']
[2026-04-10 12:40:41] 2026-04-10 16:40:36,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 12:40:41] 2026-04-10 16:40:36,679 | INFO     | [monitor] control thread has ended
[2026-04-10 12:40:41] 2026-04-10 16:40:41,158 | INFO     | all workflow threads have been joined
[2026-04-10 12:40:41] 2026-04-10 16:40:41,158 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 12:40:41] 2026-04-10 16:40:41,158 | INFO     | traces error code: 0
[2026-04-10 12:40:41] 2026-04-10 16:40:41,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 12:40:41] 2026-04-10 16:40:41,300 [wrapper] ==== pilot stdout END ====
[2026-04-10 12:40:41] 2026-04-10 16:40:41,306 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 12:40:41] 2026-04-10 16:40:41,312 [wrapper] pilotpid: 2700024
[2026-04-10 12:40:41] 2026-04-10 16:40:41,316 [wrapper] Pilot exit status: 0
[2026-04-10 12:40:41] 2026-04-10 16:40:41,330 [wrapper] pandaids: 7083313445
[2026-04-10 12:40:41] 2026-04-10 16:40:41,402 [wrapper] cleanup supervisor_pilot 2778784 2700025
[2026-04-10 12:40:41] 2026-04-10 16:40:41,407 [wrapper] Test setup, not cleaning
[2026-04-10 12:40:41] 2026-04-10 16:40:41,411 [wrapper] apfmon messages muted
[2026-04-10 12:40:41] 2026-04-10 16:40:41,414 [wrapper] ==== wrapper stdout END ====
[2026-04-10 12:40:41] 2026-04-10 16:40:41,418 [wrapper] ==== wrapper stderr END ====
[2026-04-10 12:40:41]  *** Error codes and diagnostics ***
[2026-04-10 12:40:41]     "exeErrorCode": 0,
[2026-04-10 12:40:41]     "pilotErrorCode": 0,
[2026-04-10 12:40:41]  *** Listing of results directory ***
[2026-04-10 12:40:41] total 416008
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc    644190 Apr  9 21:35 pilot3.tar.gz
[2026-04-10 12:40:41] -rwx------ 1 boinc boinc     36322 Apr  9 21:36 runpilot2-wrapper.sh
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc      5094 Apr  9 21:37 queuedata.json
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc       100 Apr 10 10:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 12:40:41] -rwxr-xr-x 1 boinc boinc      7986 Apr 10 10:41 run_atlas
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc       105 Apr 10 10:41 job.xml
[2026-04-10 12:40:41] -rw-r--r-- 2 boinc boinc 222493383 Apr 10 10:41 EVNT.49263198._000527.pool.root.1
[2026-04-10 12:40:41] -rw-r--r-- 2 boinc boinc     15665 Apr 10 10:41 start_atlas.sh
[2026-04-10 12:40:41] drwxrwx--x 2 boinc boinc      4096 Apr 10 10:41 shared
[2026-04-10 12:40:41] -rw-r--r-- 2 boinc boinc    656938 Apr 10 10:41 input.tar.gz
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc      9659 Apr 10 10:41 init_data.xml
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc         0 Apr 10 10:41 boinc_setup_complete
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc         0 Apr 10 10:41 boinc_lockfile
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc      2575 Apr 10 10:41 pandaJob.out
[2026-04-10 12:40:41] -rw------- 1 boinc boinc    997860 Apr 10 10:42 agis_schedconf.cvmfs.json
[2026-04-10 12:40:41] -rw------- 1 boinc boinc   1511579 Apr 10 10:42 agis_ddmendpoints.agis.ALL.json
[2026-04-10 12:40:41] -rw------- 1 boinc boinc       418 Apr 10 10:42 workernode_map.json
[2026-04-10 12:40:41] drwx------ 5 boinc boinc      4096 Apr 10 10:42 pilot3
[2026-04-10 12:40:41] -rw------- 1 boinc boinc 197508048 Apr 10 12:39 HITS.49263200._030620.pool.root.1
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc       487 Apr 10 12:39 boinc_task_state.xml
[2026-04-10 12:40:41] -rw------- 1 boinc boinc      1024 Apr 10 12:39 memory_monitor_summary.json
[2026-04-10 12:40:41] -rw------- 1 boinc boinc    279312 Apr 10 12:39 log.49263200._030620.job.log.tgz.1
[2026-04-10 12:40:41] -rw------- 1 boinc boinc      6309 Apr 10 12:39 heartbeat_new.json
[2026-04-10 12:40:41] -rw------- 1 boinc boinc      6200 Apr 10 12:39 heartbeat.json
[2026-04-10 12:40:41] -rw------- 1 boinc boinc        95 Apr 10 12:40 pilot_heartbeat.json
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc        27 Apr 10 12:40 wrapper_checkpoint.txt
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc      8192 Apr 10 12:40 boinc_mmap_file
[2026-04-10 12:40:41] -rw------- 1 boinc boinc      4826 Apr 10 12:40 pilotlog.txt
[2026-04-10 12:40:41] -rw------- 1 boinc boinc    682638 Apr 10 12:40 log.49263200._030620.job.log.1
[2026-04-10 12:40:41] -rw------- 1 boinc boinc       357 Apr 10 12:40 output.list
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc       410 Apr 10 12:40 runtime_log
[2026-04-10 12:40:41] -rw------- 1 boinc boinc    983040 Apr 10 12:40 result.tar.gz
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc      8513 Apr 10 12:40 runtime_log.err
[2026-04-10 12:40:41] -rw------- 1 boinc boinc       644 Apr 10 12:40 5438030e0b37.diag
[2026-04-10 12:40:41] -rw-r--r-- 1 boinc boinc     21322 Apr 10 12:40 stderr.txt
[2026-04-10 12:40:41] HITS file was successfully produced:
[2026-04-10 12:40:41] -rw------- 1 boinc boinc 197508048 Apr 10 12:39 shared/HITS.pool.root.1
[2026-04-10 12:40:41]  *** Contents of shared directory: ***
[2026-04-10 12:40:41] total 411788
[2026-04-10 12:40:41] -rw-r--r-- 2 boinc boinc 222493383 Apr 10 10:41 ATLAS.root_0
[2026-04-10 12:40:41] -rw-r--r-- 2 boinc boinc     15665 Apr 10 10:41 start_atlas.sh
[2026-04-10 12:40:41] -rw-r--r-- 2 boinc boinc    656938 Apr 10 10:41 input.tar.gz
[2026-04-10 12:40:41] -rw------- 1 boinc boinc 197508048 Apr 10 12:39 HITS.pool.root.1
[2026-04-10 12:40:41] -rw------- 1 boinc boinc    983040 Apr 10 12:40 result.tar.gz
12:40:43 (2695839): run_atlas exited; CPU time 27751.297676
12:40:43 (2695839): called boinc_finish(0)

</stderr_txt>
]]>

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