Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:39:30 (3789650): wrapper (7.7.26015): starting
10:39:30 (3789650): wrapper: running run_atlas (--nthreads 2)
[2026-04-10 10:39:30] Arguments: --nthreads 2
[2026-04-10 10:39:30] Threads: 2
[2026-04-10 10:39:30] Checking for CVMFS
[2026-04-10 10:39:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 10:39:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 10:39:30] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 10:39:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 10:39:30] 2.9.2.0 3735197 529 53028 158291 0 50 19694027 36864000 0 130560 0 222902 99.980 22009 23265 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-10 10:39:30] CVMFS is ok
[2026-04-10 10:39:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 10:39:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 10:39:30] Further information can be found at the LHC@home message board.
[2026-04-10 10:39:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 10:39:30] Checking for apptainer binary...
[2026-04-10 10:39:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 10:39:30] Running /usr/bin/apptainer --version
[2026-04-10 10:39:30] apptainer version 1.4.1-1.1
[2026-04-10 10:39:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 10:39:30] magicA244
[2026-04-10 10:39:30] apptainer works
[2026-04-10 10:39:30] Set ATHENA_PROC_NUMBER=2
[2026-04-10 10:39:30] Set ATHENA_CORE_NUMBER=2
[2026-04-10 10:39:30] Starting ATLAS job with PandaID=7087050132
[2026-04-10 10:39:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 12:47:57]  *** The last 200 lines of the pilot log: ***
[2026-04-10 12:47:57] 2026-04-10 10:47:32,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 12:47:57] 2026-04-10 10:47:32,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 12:47:57] 2026-04-10 10:47:32,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 12:47:57] 2026-04-10 10:47:32,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 12:47:57] 2026-04-10 10:47:32,368 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 12:47:57] 2026-04-10 10:47:32,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 12:47:57] 2026-04-10 10:47:32,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 12:47:57] 2026-04-10 10:47:32,369 | INFO     | job 7087050132 has completed (purged errors)
[2026-04-10 12:47:57] 2026-04-10 10:47:32,369 | INFO     | overall cleanup function is called
[2026-04-10 12:47:57] 2026-04-10 10:47:33,374 | INFO     | --- collectZombieJob: --- 10, [3798080]
[2026-04-10 12:47:57] 2026-04-10 10:47:33,375 | INFO     | zombie collector waiting for pid 3798080
[2026-04-10 12:47:57] 2026-04-10 10:47:33,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 12:47:57] 2026-04-10 10:47:33,375 | INFO     | collected zombie processes
[2026-04-10 12:47:57] 2026-04-10 10:47:33,375 | INFO     | will attempt to kill all subprocesses of pid=3798080
[2026-04-10 12:47:57] 2026-04-10 10:47:33,403 | INFO     | process IDs to be killed: [3798080] (in reverse order)
[2026-04-10 12:47:57] 2026-04-10 10:47:33,424 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 12:47:57] 2026-04-10 10:47:33,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 12:47:57] 2026-04-10 10:47:33,425 | INFO     | did not find any defunct processes belonging to 3798080
[2026-04-10 12:47:57] 2026-04-10 10:47:33,426 | INFO     | did not find any defunct processes belonging to 3798080
[2026-04-10 12:47:57] 2026-04-10 10:47:33,426 | INFO     | Ready for new job
[2026-04-10 12:47:57] 2026-04-10 10:47:33,427 | INFO     | **************************************
[2026-04-10 12:47:57] 2026-04-10 10:47:33,427 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 12:47:57] 2026-04-10 10:47:33,427 | INFO     | **************************************
[2026-04-10 12:47:57] 2026-04-10 10:47:33,427 | INFO     | 
[2026-04-10 12:47:57] 2026-04-10 10:47:33,427 | INFO     | architecture information:
[2026-04-10 12:47:57] 2026-04-10 10:47:33,427 | INFO     | executing command: cat /etc/os-release
[2026-04-10 12:47:57] 2026-04-10 10:47:33,436 | INFO     | cat /etc/os-release:
[2026-04-10 12:47:57] NAME="CentOS Linux"
[2026-04-10 12:47:57] VERSION="7 (Core)"
[2026-04-10 12:47:57] ID="centos"
[2026-04-10 12:47:57] ID_LIKE="rhel fedora"
[2026-04-10 12:47:57] VERSION_ID="7"
[2026-04-10 12:47:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 12:47:57] ANSI_COLOR="0;31"
[2026-04-10 12:47:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 12:47:57] HOME_URL="https://www.centos.org/"
[2026-04-10 12:47:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 12:47:57] 
[2026-04-10 12:47:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 12:47:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 12:47:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 12:47:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 12:47:57] 
[2026-04-10 12:47:57] 2026-04-10 10:47:33,436 | INFO     | **************************************
[2026-04-10 12:47:57] 2026-04-10 10:47:33,939 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-10 12:47:57] 2026-04-10 10:47:33,949 | INFO     | sufficient remaining disk space (504019025920 B)
[2026-04-10 12:47:57] 2026-04-10 10:47:33,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 12:47:57] 2026-04-10 10:47:33,949 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 12:47:57] 2026-04-10 10:47:33,949 | INFO     | update_server=False
[2026-04-10 12:47:57] 2026-04-10 10:47:33,949 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 12:47:57] 2026-04-10 10:47:33,949 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-10 12:47:57] 2026-04-10 10:47:33,950 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 12:47:57] 2026-04-10 10:47:33,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 12:47:57] 2026-04-10 10:47:33,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 12:47:57] 2026-04-10 10:47:33,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 12:47:57] 2026-04-10 10:47:33,950 | INFO     | aborting loop
[2026-04-10 12:47:57] 2026-04-10 10:47:33,986 | INFO     | all data control threads have been joined
[2026-04-10 12:47:57] 2026-04-10 10:47:34,028 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 12:47:57] 2026-04-10 10:47:34,285 | INFO     | all job control threads have been joined
[2026-04-10 12:47:57] 2026-04-10 10:47:34,833 | INFO     | all payload control threads have been joined
[2026-04-10 12:47:57] 2026-04-10 10:47:34,954 | INFO     | [job] retrieve thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:34,955 | INFO     | [job] job monitor thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:34,991 | INFO     | [data] control thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:35,048 | INFO     | [payload] validate_post thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:35,057 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:35,091 | INFO     | [data] copytool_in thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:35,290 | INFO     | [job] control thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:35,509 | INFO     | [payload] failed_post thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:35,838 | INFO     | [payload] control thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:36,033 | INFO     | [data] copytool_out thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:36,121 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:36,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 12:47:57] 2026-04-10 10:47:36,389 | INFO     | [job] validate thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:36,395 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:36,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 12:47:57] 2026-04-10 10:47:37,881 | INFO     | [job] queue monitor thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:40,171 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:44,395 | INFO     | job.realtimelogging is not enabled
[2026-04-10 12:47:57] 2026-04-10 10:47:45,400 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 12:47:57] 2026-04-10 10:47:50,699 | INFO     | [monitor] cgroup control has ended
[2026-04-10 12:47:57] 2026-04-10 10:47:52,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424446883648)>', '<ExcThread(monitor, started 140423796344576)>']
[2026-04-10 12:47:57] 2026-04-10 10:47:53,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 12:47:57] 2026-04-10 10:47:53,045 | INFO     | [monitor] control thread has ended
[2026-04-10 12:47:57] 2026-04-10 10:47:57,080 | INFO     | all workflow threads have been joined
[2026-04-10 12:47:57] 2026-04-10 10:47:57,080 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 12:47:57] 2026-04-10 10:47:57,080 | INFO     | traces error code: 0
[2026-04-10 12:47:57] 2026-04-10 10:47:57,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 12:47:57] 2026-04-10 10:47:57,124 [wrapper] ==== pilot stdout END ====
[2026-04-10 12:47:57] 2026-04-10 10:47:57,127 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 12:47:57] 2026-04-10 10:47:57,129 [wrapper] pilotpid: 3793672
[2026-04-10 12:47:57] 2026-04-10 10:47:57,131 [wrapper] Pilot exit status: 0
[2026-04-10 12:47:57] 2026-04-10 10:47:57,138 [wrapper] pandaids: 7087050132
[2026-04-10 12:47:57] 2026-04-10 10:47:57,151 [wrapper] cleanup supervisor_pilot 3803152 3793673
[2026-04-10 12:47:57] 2026-04-10 10:47:57,154 [wrapper] Test setup, not cleaning
[2026-04-10 12:47:57] 2026-04-10 10:47:57,156 [wrapper] apfmon messages muted
[2026-04-10 12:47:57] 2026-04-10 10:47:57,159 [wrapper] ==== wrapper stdout END ====
[2026-04-10 12:47:57] 2026-04-10 10:47:57,161 [wrapper] ==== wrapper stderr END ====
[2026-04-10 12:47:57]  *** Error codes and diagnostics ***
[2026-04-10 12:47:57]     "exeErrorCode": 0,
[2026-04-10 12:47:57]     "pilotErrorCode": 0,
[2026-04-10 12:47:57]  *** Listing of results directory ***
[2026-04-10 12:47:57] total 624096
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc      5094 Apr 10 05:20 queuedata.json
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc    644190 Apr 10 05:20 pilot3.tar.gz
[2026-04-10 12:47:57] -rwx------ 1 boinc boinc     36322 Apr 10 05:21 runpilot2-wrapper.sh
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc       100 Apr 10 10:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 12:47:57] -rwxr-xr-x 1 boinc boinc      7986 Apr 10 10:39 run_atlas
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc       105 Apr 10 10:39 job.xml
[2026-04-10 12:47:57] -rw-r--r-- 2 boinc boinc 438879885 Apr 10 10:39 EVNT.46701403._001992.pool.root.1
[2026-04-10 12:47:57] -rw-r--r-- 2 boinc boinc    656923 Apr 10 10:39 input.tar.gz
[2026-04-10 12:47:57] -rw-r--r-- 2 boinc boinc     15665 Apr 10 10:39 start_atlas.sh
[2026-04-10 12:47:57] drwxrwx--x 2 boinc boinc      4096 Apr 10 10:39 shared
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc         0 Apr 10 10:39 boinc_setup_complete
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc      6124 Apr 10 10:39 init_data.xml
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc         0 Apr 10 10:39 boinc_lockfile
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc      2563 Apr 10 10:39 pandaJob.out
[2026-04-10 12:47:57] -rw------- 1 boinc boinc    997876 Apr 10 10:39 agis_schedconf.cvmfs.json
[2026-04-10 12:47:57] -rw------- 1 boinc boinc   1511579 Apr 10 10:39 agis_ddmendpoints.agis.ALL.json
[2026-04-10 12:47:57] -rw------- 1 boinc boinc       428 Apr 10 10:39 workernode_map.json
[2026-04-10 12:47:57] drwx------ 5 boinc boinc      4096 Apr 10 10:39 pilot3
[2026-04-10 12:47:57] -rw------- 1 boinc boinc 194231213 Apr 10 12:47 HITS.48955010._055069.pool.root.1
[2026-04-10 12:47:57] -rw------- 1 boinc boinc        95 Apr 10 12:47 pilot_heartbeat.json
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc       488 Apr 10 12:47 boinc_task_state.xml
[2026-04-10 12:47:57] -rw------- 1 boinc boinc      1016 Apr 10 12:47 memory_monitor_summary.json
[2026-04-10 12:47:57] -rw------- 1 boinc boinc    231362 Apr 10 12:47 log.48955010._055069.job.log.tgz.1
[2026-04-10 12:47:57] -rw------- 1 boinc boinc      6336 Apr 10 12:47 heartbeat_new.json
[2026-04-10 12:47:57] -rw------- 1 boinc boinc      6227 Apr 10 12:47 heartbeat.json
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc      8192 Apr 10 12:47 boinc_mmap_file
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc        27 Apr 10 12:47 wrapper_checkpoint.txt
[2026-04-10 12:47:57] -rw------- 1 boinc boinc      4623 Apr 10 12:47 pilotlog.txt
[2026-04-10 12:47:57] -rw------- 1 boinc boinc    728163 Apr 10 12:47 log.48955010._055069.job.log.1
[2026-04-10 12:47:57] -rw------- 1 boinc boinc       357 Apr 10 12:47 output.list
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc       410 Apr 10 12:47 runtime_log
[2026-04-10 12:47:57] -rw------- 1 boinc boinc    972800 Apr 10 12:47 result.tar.gz
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc      8533 Apr 10 12:47 runtime_log.err
[2026-04-10 12:47:57] -rw------- 1 boinc boinc       662 Apr 10 12:47 6cd16278193b.diag
[2026-04-10 12:47:57] -rw-r--r-- 1 boinc boinc     11317 Apr 10 12:47 stderr.txt
[2026-04-10 12:47:57] HITS file was successfully produced:
[2026-04-10 12:47:57] -rw------- 1 boinc boinc 194231213 Apr 10 12:47 shared/HITS.pool.root.1
[2026-04-10 12:47:57]  *** Contents of shared directory: ***
[2026-04-10 12:47:57] total 619896
[2026-04-10 12:47:57] -rw-r--r-- 2 boinc boinc 438879885 Apr 10 10:39 ATLAS.root_0
[2026-04-10 12:47:57] -rw-r--r-- 2 boinc boinc    656923 Apr 10 10:39 input.tar.gz
[2026-04-10 12:47:57] -rw-r--r-- 2 boinc boinc     15665 Apr 10 10:39 start_atlas.sh
[2026-04-10 12:47:57] -rw------- 1 boinc boinc 194231213 Apr 10 12:47 HITS.pool.root.1
[2026-04-10 12:47:57] -rw------- 1 boinc boinc    972800 Apr 10 12:47 result.tar.gz
12:47:58 (3789650): run_atlas exited; CPU time 14739.705391
12:47:58 (3789650): called boinc_finish(0)

</stderr_txt>
]]>

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