Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:48:28 (3506948): wrapper (7.7.26015): starting
09:48:28 (3506948): wrapper: running run_atlas (--nthreads 4)
[2026-04-10 09:48:28] Arguments: --nthreads 4
[2026-04-10 09:48:28] Threads: 4
[2026-04-10 09:48:28] Checking for CVMFS
[2026-04-10 09:48:28] No cvmfs_config command found, will try listing directly
[2026-04-10 09:48:28] CVMFS is ok
[2026-04-10 09:48:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 09:48:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 09:48:28] Further information can be found at the LHC@home message board.
[2026-04-10 09:48:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 09:48:28] Checking for apptainer binary...
[2026-04-10 09:48:28] which: no apptainer in ((null))
[2026-04-10 09:48:28] apptainer is not installed, using version from CVMFS
[2026-04-10 09:48:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 09:48:29] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot20/slots/14/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-04-10 09:48:29] apptainer works
[2026-04-10 09:48:29] Set ATHENA_PROC_NUMBER=4
[2026-04-10 09:48:29] Set ATHENA_CORE_NUMBER=4
[2026-04-10 09:48:29] Starting ATLAS job with PandaID=7083092577
[2026-04-10 09:48:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot20/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 13:10:12]  *** The last 200 lines of the pilot log: ***
[2026-04-10 13:10:12] 2026-04-10 11:09:28,276 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot20/slots/14/workernode_map.json
[2026-04-10 13:10:12] 2026-04-10 11:09:28,277 | INFO     | this job has now completed (state=finished)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,277 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,277 | INFO     | log transfer has been attempted: DONE
[2026-04-10 13:10:12] 2026-04-10 11:09:28,277 | INFO     | job 7083092577 has finished - writing final server update
[2026-04-10 13:10:12] 2026-04-10 11:09:28,277 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3458394/.job.ad'
[2026-04-10 13:10:12] 2026-04-10 11:09:28,278 | INFO     | total number of processed events: 400 (read)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,289 | INFO     | using path: /var/lib/boinc/var/slot20/slots/14/PanDA_Pilot-7083092577/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,290 | INFO     | extracted standard info from prmon json
[2026-04-10 13:10:12] 2026-04-10 11:09:28,290 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 13:10:12] 2026-04-10 11:09:28,290 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 13:10:12] 2026-04-10 11:09:28,291 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 13:10:12] 2026-04-10 11:09:28,294 | INFO     | fitting pss+swap vs Time
[2026-04-10 13:10:12] 2026-04-10 11:09:28,295 | INFO     | sum of square deviations: 2370641658.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,296 | INFO     | sum of deviations: 25953184806.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,296 | INFO     | mean x (centered): 0.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,296 | INFO     | mean y: 2327271.07106599
[2026-04-10 13:10:12] 2026-04-10 11:09:28,296 | INFO     | intersect: 2327271.07106599
[2026-04-10 13:10:12] 2026-04-10 11:09:28,296 | INFO     | chi2: 1.363182256524683
[2026-04-10 13:10:12] 2026-04-10 11:09:28,297 | INFO     | sum of square deviations: 2194675568.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,298 | INFO     | sum of deviations: 25166207061.5
[2026-04-10 13:10:12] 2026-04-10 11:09:28,298 | INFO     | mean x (centered): 0.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,298 | INFO     | mean y: 2326588.9010416665
[2026-04-10 13:10:12] 2026-04-10 11:09:28,298 | INFO     | intersect: 2326588.9010416665
[2026-04-10 13:10:12] 2026-04-10 11:09:28,299 | INFO     | chi2: 1.3639896072101547
[2026-04-10 13:10:12] 2026-04-10 11:09:28,299 | INFO     | current chi2=1.3639896072101547 (change=-0.05922543970973087 %)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,299 | INFO     | right removable region: 191
[2026-04-10 13:10:12] 2026-04-10 11:09:28,299 | INFO     | sum of square deviations: 2194675568.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,300 | INFO     | sum of deviations: -220972438.99999905
[2026-04-10 13:10:12] 2026-04-10 11:09:28,300 | INFO     | mean x (centered): 0.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,300 | INFO     | mean y: 2349671.5104166665
[2026-04-10 13:10:12] 2026-04-10 11:09:28,301 | INFO     | intersect: 2349671.5104166665
[2026-04-10 13:10:12] 2026-04-10 11:09:28,301 | INFO     | chi2: 0.009674334617427949
[2026-04-10 13:10:12] 2026-04-10 11:09:28,301 | INFO     | current chi2=0.009674334617427949 (change=99.2903124603388 %)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,301 | INFO     | sum of square deviations: 2027639878.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,302 | INFO     | sum of deviations: -439321389.9999999
[2026-04-10 13:10:12] 2026-04-10 11:09:28,302 | INFO     | mean x (centered): 0.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,303 | INFO     | mean y: 2349857.310160428
[2026-04-10 13:10:12] 2026-04-10 11:09:28,303 | INFO     | intersect: 2349857.310160428
[2026-04-10 13:10:12] 2026-04-10 11:09:28,303 | INFO     | chi2: 0.0072896825641551866
[2026-04-10 13:10:12] 2026-04-10 11:09:28,303 | INFO     | current chi2=0.0072896825641551866 (change=24.649261655441414 %)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,303 | INFO     | left removable region: 10
[2026-04-10 13:10:12] 2026-04-10 11:09:28,303 | INFO     | sum of square deviations: 1838657730.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,304 | INFO     | sum of deviations: -559522012.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,305 | INFO     | mean x (centered): 0.0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,305 | INFO     | mean y: 2349740.966850829
[2026-04-10 13:10:12] 2026-04-10 11:09:28,305 | INFO     | intersect: 2349740.966850829
[2026-04-10 13:10:12] 2026-04-10 11:09:28,305 | INFO     | chi2: 0.0072608534563254655
[2026-04-10 13:10:12] 2026-04-10 11:09:28,305 | INFO     | current memory leak: -0.30 B/s (using 181 data points, chi2=0.01)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | could have reported an average CPU frequency of 2598 MHz (10 samples)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | ..............................
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . Timing measurements:
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . get job = 0 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . initial setup = 6 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . payload setup = 10 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . stage-in = 0 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . payload execution = 12016 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,306 | INFO     | . stage-out = 0 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,307 | INFO     | . log creation = 0 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,307 | INFO     | ..............................
[2026-04-10 13:10:12] 2026-04-10 11:09:28,399 | INFO     | 
[2026-04-10 13:10:12] 2026-04-10 11:09:28,399 | INFO     | job summary report
[2026-04-10 13:10:12] 2026-04-10 11:09:28,399 | INFO     | --------------------------------------------------
[2026-04-10 13:10:12] 2026-04-10 11:09:28,399 | INFO     | PanDA job id: 7083092577
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | task id: 49499736
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | errors: (none)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | pilot state: finished 
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | transexitcode: 0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | exeerrorcode: 0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | exeerrordiag: 
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | exitcode: 0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | exitmsg: OK
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | cpuconsumptiontime: 44443 s
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | nevents: 400
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | neventsw: 0
[2026-04-10 13:10:12] 2026-04-10 11:09:28,400 | INFO     | pid: 3515577
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | pgrp: 3515577
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | corecount: 4
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | event service: False
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | sizes: {0: 2278976, 1: 2281474, 12: 2281474, 12030: 2311220, 12031: 2320436}
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | --------------------------------------------------
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | 
[2026-04-10 13:10:12] 2026-04-10 11:09:28,401 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot20/slots/14
[2026-04-10 13:10:12] 2026-04-10 11:09:28,421 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,421 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,423 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,424 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 13:10:12] 2026-04-10 11:09:28,424 | INFO     | job 7083092577 has completed (purged errors)
[2026-04-10 13:10:12] 2026-04-10 11:09:28,424 | INFO     | overall cleanup function is called
[2026-04-10 13:10:12] 2026-04-10 11:09:29,432 | INFO     | --- collectZombieJob: --- 10, [3515577]
[2026-04-10 13:10:12] 2026-04-10 11:09:29,433 | INFO     | zombie collector waiting for pid 3515577
[2026-04-10 13:10:12] 2026-04-10 11:09:29,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 13:10:12] 2026-04-10 11:09:29,433 | INFO     | collected zombie processes
[2026-04-10 13:10:12] 2026-04-10 11:09:29,433 | INFO     | will attempt to kill all subprocesses of pid=3515577
[2026-04-10 13:10:12] 2026-04-10 11:09:29,815 | INFO     | process IDs to be killed: [3515577] (in reverse order)
[2026-04-10 13:10:12] 2026-04-10 11:09:29,937 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 13:10:12] 2026-04-10 11:09:29,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 13:10:12] 2026-04-10 11:09:29,950 | INFO     | did not find any defunct processes belonging to 3515577
[2026-04-10 13:10:12] 2026-04-10 11:09:29,961 | INFO     | did not find any defunct processes belonging to 3515577
[2026-04-10 13:10:12] 2026-04-10 11:09:29,961 | INFO     | Ready for new job
[2026-04-10 13:10:12] 2026-04-10 11:09:29,963 | INFO     | **************************************
[2026-04-10 13:10:12] 2026-04-10 11:09:29,963 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 13:10:12] 2026-04-10 11:09:29,964 | INFO     | **************************************
[2026-04-10 13:10:12] 2026-04-10 11:09:29,964 | INFO     | 
[2026-04-10 13:10:12] 2026-04-10 11:09:29,967 | INFO     | architecture information:
[2026-04-10 13:10:12] 2026-04-10 11:09:29,968 | INFO     | executing command: cat /etc/os-release
[2026-04-10 13:10:12] 2026-04-10 11:09:29,981 | INFO     | cat /etc/os-release:
[2026-04-10 13:10:12] NAME="CentOS Linux"
[2026-04-10 13:10:12] VERSION="7 (Core)"
[2026-04-10 13:10:12] ID="centos"
[2026-04-10 13:10:12] ID_LIKE="rhel fedora"
[2026-04-10 13:10:12] VERSION_ID="7"
[2026-04-10 13:10:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 13:10:12] ANSI_COLOR="0;31"
[2026-04-10 13:10:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 13:10:12] HOME_URL="https://www.centos.org/"
[2026-04-10 13:10:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 13:10:12] 
[2026-04-10 13:10:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 13:10:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 13:10:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 13:10:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 13:10:12] 
[2026-04-10 13:10:12] 2026-04-10 11:09:29,982 | INFO     | **************************************
[2026-04-10 13:10:12] 2026-04-10 11:09:30,485 | INFO     | executing command: df -mP /var/lib/boinc/var/slot20/slots/14
[2026-04-10 13:10:12] 2026-04-10 11:09:30,501 | INFO     | sufficient remaining disk space (33076281344 B)
[2026-04-10 13:10:12] 2026-04-10 11:09:30,502 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 13:10:12] 2026-04-10 11:09:30,502 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 13:10:12] 2026-04-10 11:09:30,502 | INFO     | update_server=False
[2026-04-10 13:10:12] 2026-04-10 11:09:30,502 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 13:10:12] 2026-04-10 11:09:30,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 13:10:12] 2026-04-10 11:09:30,725 | INFO     | all payload control threads have been joined
[2026-04-10 13:10:12] 2026-04-10 11:09:31,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 13:10:12] 2026-04-10 11:09:31,338 | INFO     | all data control threads have been joined
[2026-04-10 13:10:12] 2026-04-10 11:09:31,507 | INFO     | [job] retrieve thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:31,649 | INFO     | all job control threads have been joined
[2026-04-10 13:10:12] 2026-04-10 11:09:31,702 | INFO     | [data] copytool_in thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:31,730 | INFO     | [payload] control thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,111 | INFO     | [job] validate thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,339 | INFO     | [data] control thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,451 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,629 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,629 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,655 | INFO     | [job] control thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,934 | INFO     | [payload] validate_post thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:32,979 | INFO     | [payload] failed_post thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:33,193 | INFO     | [data] copytool_out thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:33,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 13:10:12] 2026-04-10 11:09:34,140 | WARNING  | process 3515577 can no longer be monitored (due to stat problems) - aborting
[2026-04-10 13:10:12] 2026-04-10 11:09:34,412 | INFO     | [job] queue monitor thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:34,416 | INFO     | using path: /var/lib/boinc/var/slot20/slots/14/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 13:10:12] 2026-04-10 11:09:34,508 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:34,782 | INFO     | number of running child processes to parent process 3515577: 1
[2026-04-10 13:10:12] 2026-04-10 11:09:34,782 | INFO     | maximum number of monitored processes: 6
[2026-04-10 13:10:12] 2026-04-10 11:09:34,782 | INFO     | aborting job monitoring since job object (job id=7083092577) has expired
[2026-04-10 13:10:12] 2026-04-10 11:09:34,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 13:10:12] 2026-04-10 11:09:34,782 | INFO     | will abort loop
[2026-04-10 13:10:12] 2026-04-10 11:09:35,787 | INFO     | [job] job monitor thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:09:41,416 | INFO     | job.realtimelogging is not enabled
[2026-04-10 13:10:12] 2026-04-10 11:09:42,421 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 13:10:12] 2026-04-10 11:10:00,525 | INFO     | PID=3510746 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 13:10:12] 2026-04-10 11:10:00,526 | INFO     | .. there are 12 such processes running
[2026-04-10 13:10:12] 2026-04-10 11:10:00,526 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 13:10:12] 2026-04-10 11:10:00,526 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 13:10:12] 2026-04-10 11:10:00,526 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 13:10:12] 2026-04-10 11:10:05,299 | INFO     | [monitor] cgroup control has ended
[2026-04-10 13:10:12] 2026-04-10 11:10:06,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22962966173504)>', '<ExcThread(monitor, started 22962725201664)>']
[2026-04-10 13:10:12] 2026-04-10 11:10:07,560 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 13:10:12] 2026-04-10 11:10:07,561 | INFO     | [monitor] control thread has ended
[2026-04-10 13:10:12] 2026-04-10 11:10:11,713 | INFO     | all workflow threads have been joined
[2026-04-10 13:10:12] 2026-04-10 11:10:11,714 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 13:10:12] 2026-04-10 11:10:11,714 | INFO     | traces error code: 0
[2026-04-10 13:10:12] 2026-04-10 11:10:11,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 13:10:12] 2026-04-10 11:10:11,894 [wrapper] ==== pilot stdout END ====
[2026-04-10 13:10:12] 2026-04-10 11:10:11,897 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 13:10:12] 2026-04-10 11:10:11,900 [wrapper] pilotpid: 3510746
[2026-04-10 13:10:12] 2026-04-10 11:10:11,903 [wrapper] Pilot exit status: 0
[2026-04-10 13:10:12] 2026-04-10 11:10:11,912 [wrapper] pandaids: 7083092577
[2026-04-10 13:10:12] 2026-04-10 11:10:11,986 [wrapper] cleanup supervisor_pilot 3709325 3510747
[2026-04-10 13:10:12] 2026-04-10 11:10:11,989 [wrapper] Test setup, not cleaning
[2026-04-10 13:10:12] 2026-04-10 11:10:11,992 [wrapper] apfmon messages muted
[2026-04-10 13:10:12] 2026-04-10 11:10:11,994 [wrapper] ==== wrapper stdout END ====
[2026-04-10 13:10:12] 2026-04-10 11:10:11,997 [wrapper] ==== wrapper stderr END ====
[2026-04-10 13:10:12]  *** Error codes and diagnostics ***
[2026-04-10 13:10:12]     "exeErrorCode": 0,
[2026-04-10 13:10:12]     "pilotErrorCode": 0,
[2026-04-10 13:10:12]  *** Listing of results directory ***
[2026-04-10 13:10:12] total 440184
[2026-04-10 13:10:12] -rwx------. 1 boinc boinc     36322 Apr  8 19:44 runpilot2-wrapper.sh
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc    644190 Apr 10 06:42 pilot3.tar.gz
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc      5094 Apr 10 06:57 queuedata.json
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc       100 Apr 10 09:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 13:10:12] -rwxr-xr-x. 1 boinc boinc      7986 Apr 10 09:47 run_atlas
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc       105 Apr 10 09:47 job.xml
[2026-04-10 13:10:12] -rw-r--r--. 2 boinc boinc 260055718 Apr 10 09:48 EVNT.49474630._000003.pool.root.1
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc      6483 Apr 10 09:48 init_data.xml
[2026-04-10 13:10:12] -rw-r--r--. 2 boinc boinc     15665 Apr 10 09:48 start_atlas.sh
[2026-04-10 13:10:12] drwxrwx--x. 2 boinc boinc      4096 Apr 10 09:48 shared
[2026-04-10 13:10:12] -rw-r--r--. 2 boinc boinc    656949 Apr 10 09:48 input.tar.gz
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc         0 Apr 10 09:48 boinc_lockfile
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc      2593 Apr 10 09:48 pandaJob.out
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc    997884 Apr 10 09:48 agis_schedconf.cvmfs.json
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc       448 Apr 10 09:48 workernode_map.json
[2026-04-10 13:10:12] drwx------. 5 boinc boinc      4096 Apr 10 09:48 pilot3
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc 183739893 Apr 10 13:08 HITS.49499736._000224.pool.root.1
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc       488 Apr 10 13:09 boinc_task_state.xml
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc        95 Apr 10 13:09 pilot_heartbeat.json
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc      1033 Apr 10 13:09 memory_monitor_summary.json
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc   1511579 Apr 10 13:09 agis_ddmendpoints.agis.ALL.json
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc    316868 Apr 10 13:09 log.49499736._000224.job.log.tgz.1
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc      6410 Apr 10 13:09 heartbeat_new.json
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc      6301 Apr 10 13:09 heartbeat.json
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc        28 Apr 10 13:10 wrapper_checkpoint.txt
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc      8192 Apr 10 13:10 boinc_mmap_file
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc      5434 Apr 10 13:10 pilotlog.txt
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc   1125557 Apr 10 13:10 log.49499736._000224.job.log.1
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc       357 Apr 10 13:10 output.list
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc       410 Apr 10 13:10 runtime_log
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc   1464320 Apr 10 13:10 result.tar.gz
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc      8844 Apr 10 13:10 runtime_log.err
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc       665 Apr 10 13:10 94195f7e7812.diag
[2026-04-10 13:10:12] -rw-r--r--. 1 boinc boinc     21040 Apr 10 13:10 stderr.txt
[2026-04-10 13:10:12] HITS file was successfully produced:
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc 183739893 Apr 10 13:08 shared/HITS.pool.root.1
[2026-04-10 13:10:12]  *** Contents of shared directory: ***
[2026-04-10 13:10:12] total 435500
[2026-04-10 13:10:12] -rw-r--r--. 2 boinc boinc 260055718 Apr 10 09:48 ATLAS.root_0
[2026-04-10 13:10:12] -rw-r--r--. 2 boinc boinc     15665 Apr 10 09:48 start_atlas.sh
[2026-04-10 13:10:12] -rw-r--r--. 2 boinc boinc    656949 Apr 10 09:48 input.tar.gz
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc 183739893 Apr 10 13:08 HITS.pool.root.1
[2026-04-10 13:10:12] -rw-------. 1 boinc boinc   1464320 Apr 10 13:10 result.tar.gz
13:10:14 (3506948): run_atlas exited; CPU time 44888.396121
13:10:14 (3506948): called boinc_finish(0)

</stderr_txt>
]]>

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