Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
17:37:50 (2039219): wrapper (7.7.26015): starting
17:37:50 (2039219): wrapper: running run_atlas (--nthreads 12)
[2026-04-14 17:37:50] Arguments: --nthreads 12
[2026-04-14 17:37:50] Threads: 12
[2026-04-14 17:37:50] Checking for CVMFS
[2026-04-14 17:37:50] No cvmfs_config command found, will try listing directly
[2026-04-14 17:37:50] CVMFS is ok
[2026-04-14 17:37:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 17:37:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 17:37:50] Further information can be found at the LHC@home message board.
[2026-04-14 17:37:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 17:37:50] Checking for apptainer binary...
[2026-04-14 17:37:50] which: no apptainer in ((null))
[2026-04-14 17:37:50] apptainer is not installed, using version from CVMFS
[2026-04-14 17:37:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 17:37:50] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-14 17:37:50] apptainer works
[2026-04-14 17:37:50] Set ATHENA_PROC_NUMBER=12
[2026-04-14 17:37:50] Set ATHENA_CORE_NUMBER=12
[2026-04-14 17:37:50] Starting ATLAS job with PandaID=7083316583
[2026-04-14 17:37:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:34:10 (1379720): wrapper (7.7.26015): starting
04:34:10 (1379720): wrapper: running run_atlas (--nthreads 12)
[2026-04-15 04:34:10] Arguments: --nthreads 12
[2026-04-15 04:34:10] Threads: 12
[2026-04-15 04:34:10] This job has been restarted, cleaning up previous attempt
[2026-04-15 04:34:10] Checking for CVMFS
[2026-04-15 04:34:10] No cvmfs_config command found, will try listing directly
[2026-04-15 04:34:10] CVMFS is ok
[2026-04-15 04:34:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-15 04:34:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-15 04:34:10] Further information can be found at the LHC@home message board.
[2026-04-15 04:34:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-15 04:34:10] Checking for apptainer binary...
[2026-04-15 04:34:10] which: no apptainer in ((null))
[2026-04-15 04:34:10] apptainer is not installed, using version from CVMFS
[2026-04-15 04:34:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-15 04:34:10] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-15 04:34:10] apptainer works
[2026-04-15 04:34:10] Set ATHENA_PROC_NUMBER=12
[2026-04-15 04:34:10] Set ATHENA_CORE_NUMBER=12
[2026-04-15 04:34:10] Starting ATLAS job with PandaID=7083316583
[2026-04-15 04:34:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-15 04:37:15] Job failed
[2026-04-15 04:37:15] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2026-04-15 04:37:15] ++ pwd
[2026-04-15 04:37:15] + export RUNTIME_CONFIG_DIR=/var/lib/boinc/var/slot60/slots/16/
[2026-04-15 04:37:15] + RUNTIME_CONFIG_DIR=/var/lib/boinc/var/slot60/slots/16/
[2026-04-15 04:37:15] + mv ATLAS.root_0 EVNT.49263198._000554.pool.root.1
[2026-04-15 04:37:15] mv: 'ATLAS.root_0' and 'EVNT.49263198._000554.pool.root.1' are the same file
[2026-04-15 04:37:15] + tar --strip-components=5 -xvf input.tar.gz
[2026-04-15 04:37:15] + umask 077
[2026-04-15 04:37:15] ++ date +%s
[2026-04-15 04:37:15] + ACCOUNTING_STARTTIME=1776220450
[2026-04-15 04:37:15] + echo 'Detecting resource accounting method available for the job.'
[2026-04-15 04:37:15] Detecting resource accounting method available for the job.
[2026-04-15 04:37:15] + JOB_ACCOUNTING=
[2026-04-15 04:37:15] + command -v arc-job-cgroup
[2026-04-15 04:37:15] + '[' -z '' ']'
[2026-04-15 04:37:15] + GNU_TIME=/usr/bin/time
[2026-04-15 04:37:15] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2026-04-15 04:37:15] Looking for /usr/bin/time tool for accounting measurements
[2026-04-15 04:37:15] + '[' '!' -z /usr/bin/time ']'
[2026-04-15 04:37:15] + /usr/bin/time --version
[2026-04-15 04:37:15] + echo 'GNU time found and will be used for job accounting.'
[2026-04-15 04:37:15] GNU time found and will be used for job accounting.
[2026-04-15 04:37:15] + JOB_ACCOUNTING=gnutime
[2026-04-15 04:37:15] + '[' -z gnutime ']'
[2026-04-15 04:37:15] + export PANDA_JSID=harvester-CERN_central_ACTA
[2026-04-15 04:37:15] + PANDA_JSID=harvester-CERN_central_ACTA
[2026-04-15 04:37:15] + export GTAG=http://aipanda404.cern.ch/data/jobs/2026-04-10/BOINC_MCORE/7083316583.out
[2026-04-15 04:37:15] + GTAG=http://aipanda404.cern.ch/data/jobs/2026-04-10/BOINC_MCORE/7083316583.out
[2026-04-15 04:37:15] + export PILOT_NOKILL=YES
[2026-04-15 04:37:15] + PILOT_NOKILL=YES
[2026-04-15 04:37:15] + export GRID_GLOBAL_JOBID=5463f45a6d31
[2026-04-15 04:37:15] + GRID_GLOBAL_JOBID=5463f45a6d31
[2026-04-15 04:37:15] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/5463f45a6d31
[2026-04-15 04:37:15] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/5463f45a6d31
[2026-04-15 04:37:15] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2026-04-15 04:37:15] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2026-04-15 04:37:15] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2026-04-15 04:37:15] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2026-04-15 04:37:15] ++ pwd
[2026-04-15 04:37:15] + RUNTIME_JOB_DIR=/var/lib/boinc/var/slot60/slots/16
[2026-04-15 04:37:15] + RUNTIME_JOB_STDIN=/dev/null
[2026-04-15 04:37:15] ++ pwd
[2026-04-15 04:37:15] + RUNTIME_JOB_STDOUT=/var/lib/boinc/var/slot60/slots/16/log.49263200._031162.job.log.1
[2026-04-15 04:37:15] ++ pwd
[2026-04-15 04:37:15] + RUNTIME_JOB_STDERR=/var/lib/boinc/var/slot60/slots/16/log.49263200._031162.job.log.1
[2026-04-15 04:37:15] ++ pwd
[2026-04-15 04:37:15] + RUNTIME_JOB_DIAG=/var/lib/boinc/var/slot60/slots/16.diag
[2026-04-15 04:37:15] + '[' '!' -z '' ']'
[2026-04-15 04:37:15] + RUNTIME_LOCAL_SCRATCH_DIR=
[2026-04-15 04:37:15] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2026-04-15 04:37:15] + RUNTIME_FRONTEND_SEES_NODE=
[2026-04-15 04:37:15] + RUNTIME_NODE_SEES_FRONTEND=yes
[2026-04-15 04:37:15] + '[' '!' -z '' ']'
[2026-04-15 04:37:15] + '[' -z yes ']'
[2026-04-15 04:37:15] ++ pwd
[2026-04-15 04:37:15] + RUNTIME_JOB_DIAG=/var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-15 04:37:15] + runtimeenvironments=
[2026-04-15 04:37:15] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2026-04-15 04:37:15] + RTE_function_0 1
[2026-04-15 04:37:15] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-15 04:37:15] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-15 04:37:15] + export BOINC_APP=ATLAS
[2026-04-15 04:37:15] + BOINC_APP=ATLAS
[2026-04-15 04:37:15] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-15 04:37:15] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-15 04:37:15] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-15 04:37:15] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-15 04:37:15] + '[' -z 1 ']'
[2026-04-15 04:37:15] + '[' 1 == 1 ']'
[2026-04-15 04:37:15] + shift
[2026-04-15 04:37:15] + export SITE_NAME=BOINC
[2026-04-15 04:37:15] + SITE_NAME=BOINC
[2026-04-15 04:37:15] + export ATLAS_LOCAL_AREA=/var/lib/boinc/var/slot60/slots/16/
[2026-04-15 04:37:15] + ATLAS_LOCAL_AREA=/var/lib/boinc/var/slot60/slots/16/
[2026-04-15 04:37:15] + '[' -e /var/lib/boinc/var/slot60/slots/16/init_data.xml ']'
[2026-04-15 04:37:15] + grep '<use_http_proxy/>' /var/lib/boinc/var/slot60/slots/16/init_data.xml
[2026-04-15 04:37:15] + '[' 0 -ne 0 ']'
[2026-04-15 04:37:15] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2026-04-15 04:37:15] + '[' -f /etc/os-release ']'
[2026-04-15 04:37:15] +++ cat /etc/os-release
[2026-04-15 04:37:15] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2026-04-15 04:37:15] +++ NAME='CentOS Linux'
[2026-04-15 04:37:15] +++ VERSION='7 (Core)'
[2026-04-15 04:37:15] +++ ID=centos
[2026-04-15 04:37:15] +++ ID_LIKE='rhel fedora'
[2026-04-15 04:37:15] +++ VERSION_ID=7
[2026-04-15 04:37:15] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2026-04-15 04:37:15] +++ ANSI_COLOR='0;31'
[2026-04-15 04:37:15] +++ CPE_NAME=cpe:/o:centos:centos:7
[2026-04-15 04:37:15] +++ HOME_URL=https://www.centos.org/
[2026-04-15 04:37:15] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2026-04-15 04:37:15] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2026-04-15 04:37:15] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2026-04-15 04:37:15] +++ REDHAT_SUPPORT_PRODUCT=centos
[2026-04-15 04:37:15] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2026-04-15 04:37:15] ++ echo 'CentOS Linux 7 (Core)'
[2026-04-15 04:37:15] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2026-04-15 04:37:15] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2026-04-15 04:37:15] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2026-04-15 04:37:15] + HOME=/var/lib/boinc/var/slot60/slots/16
[2026-04-15 04:37:15] + export HOME
[2026-04-15 04:37:15] + cd /var/lib/boinc/var/slot60/slots/16
[2026-04-15 04:37:15] + '[' '!' -z '' ']'
[2026-04-15 04:37:15] + '[' -z '' ']'
[2026-04-15 04:37:15] ++ /bin/hostname -f
[2026-04-15 04:37:15] + nodename=skurut28.grid.cesnet.cz
[2026-04-15 04:37:15] + echo nodename=skurut28.grid.cesnet.cz
[2026-04-15 04:37:15] + echo Processors=2
[2026-04-15 04:37:15] + echo Nodecount=1
[2026-04-15 04:37:15] + echo Benchmark=HEPSPEC:1.0
[2026-04-15 04:37:15] + executable=./runpilot2-wrapper.sh
[2026-04-15 04:37:15] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2026-04-15 04:37:15] ++ dd if=./runpilot2-wrapper.sh count=1
[2026-04-15 04:37:15] ++ head -n 1
[2026-04-15 04:37:15] ++ tr -d '\0'
[2026-04-15 04:37:15] + line1='#!/bin/bash'
[2026-04-15 04:37:15] ++ echo '#!/bin/bash'
[2026-04-15 04:37:15] ++ sed -n 's/^#! *//p'
[2026-04-15 04:37:15] + shebang=/bin/bash
[2026-04-15 04:37:15] ++ echo /bin/bash
[2026-04-15 04:37:15] ++ awk '{print $1}'
[2026-04-15 04:37:15] + interpreter=/bin/bash
[2026-04-15 04:37:15] + '[' /bin/bash = /usr/bin/env ']'
[2026-04-15 04:37:15] + '[' x/bin/bash = x ']'
[2026-04-15 04:37:15] + type /bin/bash
[2026-04-15 04:37:15] + '[' xgnutime = xgnutime ']'
[2026-04-15 04:37:15] + /usr/bin/time -o /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.12.4.1 -z -t --piloturl local --mute --container
[2026-04-15 04:37:15] + RESULT=2
[2026-04-15 04:37:15] + sed -i -e /nodename=/d /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-15 04:37:15] ++ grep domain_name init_data.xml
[2026-04-15 04:37:15] ++ awk -F '>' '{print $2}'
[2026-04-15 04:37:15] ++ sed -e 's# #_#g'
[2026-04-15 04:37:15] ++ awk -F '<' '{print $1}'
[2026-04-15 04:37:15] + hostname=skurut28.grid.cesnet.cz
[2026-04-15 04:37:15] ++ grep user_name init_data.xml
[2026-04-15 04:37:15] ++ awk -F '>' '{print $2}'
[2026-04-15 04:37:15] ++ awk -F '<' '{print $1}'
[2026-04-15 04:37:15] ++ sed -e 's# #_#g'
[2026-04-15 04:37:15] + username=praguelcg2
[2026-04-15 04:37:15] + nodename=praguelcg2@skurut28.grid.cesnet.cz
[2026-04-15 04:37:15] + echo nodename=praguelcg2@skurut28.grid.cesnet.cz
[2026-04-15 04:37:15] + '[' -n 12 ']'
[2026-04-15 04:37:15] + sed -i -e s/Processors=1/Processors=12/ /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-15 04:37:15] + echo exitcode=2
[2026-04-15 04:37:15] + runtimeenvironments=
[2026-04-15 04:37:15] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2026-04-15 04:37:15] + RTE_function_0 2
[2026-04-15 04:37:15] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-15 04:37:15] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-15 04:37:15] + export BOINC_APP=ATLAS
[2026-04-15 04:37:15] + BOINC_APP=ATLAS
[2026-04-15 04:37:15] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-15 04:37:15] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-15 04:37:15] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-15 04:37:15] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-15 04:37:15] + '[' -z 2 ']'
[2026-04-15 04:37:15] + '[' 2 == 1 ']'
[2026-04-15 04:37:15] + '[' 0 -ne 0 ']'
[2026-04-15 04:37:15] + echo 'zip all output files'
[2026-04-15 04:37:15] + flist='*.diag '
[2026-04-15 04:37:15] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-15 04:37:15] + '[' -e ./heartbeat.json ']'
[2026-04-15 04:37:15] + flist='*.diag  ./heartbeat.json'
[2026-04-15 04:37:15] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-15 04:37:15] + '[' -e ./output.list ']'
[2026-04-15 04:37:15] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-15 04:37:15] + '[' -e ./log.49263200._031162.job.log.1 ']'
[2026-04-15 04:37:15] + flist='*.diag  ./heartbeat.json ./log.49263200._031162.job.log.1'
[2026-04-15 04:37:15] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-15 04:37:15] + '[' -e ./log.49263200._031162.job.log.1 ']'
[2026-04-15 04:37:15] + flist='*.diag  ./heartbeat.json ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1'
[2026-04-15 04:37:15] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-15 04:37:15] + '[' -e ./gmlog/ ']'
[2026-04-15 04:37:15] + '[' -f output.list ']'
[2026-04-15 04:37:15] + tar cvf result.tar.gz 5463f45a6d31.diag ./heartbeat.json ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1
[2026-04-15 04:37:15] + '[' xgnutime = xcgroup ']'
[2026-04-15 04:37:15] + '[' -n '' ']'
[2026-04-15 04:37:15] + '[' -n '' ']'
[2026-04-15 04:37:15] ++ date +%s
[2026-04-15 04:37:15] + ACCOUNTING_ENDTIME=1776220635
[2026-04-15 04:37:15] ++ date -d '1970-01-01 UTC 1776220450 seconds' +%Y%m%d%H%M%SZ
[2026-04-15 04:37:15] + echo LRMSStartTime=20260415043410Z
[2026-04-15 04:37:15] ++ date -d '1970-01-01 UTC 1776220635 seconds' +%Y%m%d%H%M%SZ
[2026-04-15 04:37:15] + echo LRMSEndTime=20260415043715Z
[2026-04-15 04:37:15] + echo walltime=185
[2026-04-15 04:37:15] + echo exitcode=2
[2026-04-15 04:37:15] + exit 2
[2026-04-15 04:37:15] ./pilotlog.txt
[2026-04-15 04:37:15] ./runtime_log.err
[2026-04-15 04:37:15] ./runtime_log
[2026-04-15 04:37:15] ./PanDA_Pilot-7083316583/pilotlog.txt
[2026-04-15 04:37:15] ./PanDA_Pilot-7083316583/prmon.log
[2026-04-15 04:37:15] ./PanDA_Pilot-7083316583/PoolFileCatalog.xml
[2026-04-15 04:37:15] ./PanDA_Pilot-7083316583/log.EVNTtoHITS
[2026-04-15 04:37:15] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2026-04-15 04:37:15] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2026-04-15 04:37:15] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2026-04-15 04:37:15] ./pilot3/pilot/util/realtimelogger.py
[2026-04-15 04:37:15] ./pilot3/pilot/util/lokirealtimelogger.py
[2026-04-15 04:37:15] ./pilot3/pilot/util/loggingsupport.py
[2026-04-15 04:37:15] ./log.49263200._031162.job.log.1
05:13:11 (1430457): wrapper (7.7.26015): starting
05:13:11 (1430457): wrapper: running run_atlas (--nthreads 12)
[2026-04-15 05:13:11] Arguments: --nthreads 12
[2026-04-15 05:13:11] Threads: 12
[2026-04-15 05:13:11] This job has been restarted, cleaning up previous attempt
[2026-04-15 05:13:11] Checking for CVMFS
[2026-04-15 05:13:11] No cvmfs_config command found, will try listing directly
[2026-04-15 05:13:11] CVMFS is ok
[2026-04-15 05:13:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-15 05:13:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-15 05:13:11] Further information can be found at the LHC@home message board.
[2026-04-15 05:13:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-15 05:13:11] Checking for apptainer binary...
[2026-04-15 05:13:11] which: no apptainer in ((null))
[2026-04-15 05:13:11] apptainer is not installed, using version from CVMFS
[2026-04-15 05:13:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-15 05:13:11] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-15 05:13:11] apptainer works
[2026-04-15 05:13:11] Set ATHENA_PROC_NUMBER=12
[2026-04-15 05:13:11] Set ATHENA_CORE_NUMBER=12
[2026-04-15 05:13:11] Starting ATLAS job with PandaID=7083316583
[2026-04-15 05:13:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:14:27 (3405143): wrapper (7.7.26015): starting
03:14:27 (3405143): wrapper: running run_atlas (--nthreads 12)
[2026-04-16 03:14:27] Arguments: --nthreads 12
[2026-04-16 03:14:27] Threads: 12
[2026-04-16 03:14:27] This job has been restarted, cleaning up previous attempt
[2026-04-16 03:14:27] Checking for CVMFS
[2026-04-16 03:14:27] No cvmfs_config command found, will try listing directly
[2026-04-16 03:14:27] CVMFS is ok
[2026-04-16 03:14:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-16 03:14:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-16 03:14:27] Further information can be found at the LHC@home message board.
[2026-04-16 03:14:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-16 03:14:27] Checking for apptainer binary...
[2026-04-16 03:14:27] which: no apptainer in ((null))
[2026-04-16 03:14:27] apptainer is not installed, using version from CVMFS
[2026-04-16 03:14:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-16 03:14:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-16 03:14:27] apptainer works
[2026-04-16 03:14:27] Set ATHENA_PROC_NUMBER=12
[2026-04-16 03:14:27] Set ATHENA_CORE_NUMBER=12
[2026-04-16 03:14:27] Starting ATLAS job with PandaID=7083316583
[2026-04-16 03:14:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-16 03:17:33] Job failed
[2026-04-16 03:17:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2026-04-16 03:17:33] ++ pwd
[2026-04-16 03:17:33] + export RUNTIME_CONFIG_DIR=/var/lib/boinc/var/slot60/slots/16/
[2026-04-16 03:17:33] + RUNTIME_CONFIG_DIR=/var/lib/boinc/var/slot60/slots/16/
[2026-04-16 03:17:33] + mv ATLAS.root_0 EVNT.49263198._000554.pool.root.1
[2026-04-16 03:17:33] mv: 'ATLAS.root_0' and 'EVNT.49263198._000554.pool.root.1' are the same file
[2026-04-16 03:17:33] + tar --strip-components=5 -xvf input.tar.gz
[2026-04-16 03:17:33] + umask 077
[2026-04-16 03:17:33] ++ date +%s
[2026-04-16 03:17:33] + ACCOUNTING_STARTTIME=1776302068
[2026-04-16 03:17:33] + echo 'Detecting resource accounting method available for the job.'
[2026-04-16 03:17:33] Detecting resource accounting method available for the job.
[2026-04-16 03:17:33] + JOB_ACCOUNTING=
[2026-04-16 03:17:33] + command -v arc-job-cgroup
[2026-04-16 03:17:33] + '[' -z '' ']'
[2026-04-16 03:17:33] + GNU_TIME=/usr/bin/time
[2026-04-16 03:17:33] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2026-04-16 03:17:33] Looking for /usr/bin/time tool for accounting measurements
[2026-04-16 03:17:33] + '[' '!' -z /usr/bin/time ']'
[2026-04-16 03:17:33] + /usr/bin/time --version
[2026-04-16 03:17:33] + echo 'GNU time found and will be used for job accounting.'
[2026-04-16 03:17:33] GNU time found and will be used for job accounting.
[2026-04-16 03:17:33] + JOB_ACCOUNTING=gnutime
[2026-04-16 03:17:33] + '[' -z gnutime ']'
[2026-04-16 03:17:33] + export PANDA_JSID=harvester-CERN_central_ACTA
[2026-04-16 03:17:33] + PANDA_JSID=harvester-CERN_central_ACTA
[2026-04-16 03:17:33] + export GTAG=http://aipanda404.cern.ch/data/jobs/2026-04-10/BOINC_MCORE/7083316583.out
[2026-04-16 03:17:33] + GTAG=http://aipanda404.cern.ch/data/jobs/2026-04-10/BOINC_MCORE/7083316583.out
[2026-04-16 03:17:33] + export PILOT_NOKILL=YES
[2026-04-16 03:17:33] + PILOT_NOKILL=YES
[2026-04-16 03:17:33] + export GRID_GLOBAL_JOBID=5463f45a6d31
[2026-04-16 03:17:33] + GRID_GLOBAL_JOBID=5463f45a6d31
[2026-04-16 03:17:33] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/5463f45a6d31
[2026-04-16 03:17:33] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/5463f45a6d31
[2026-04-16 03:17:33] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2026-04-16 03:17:33] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2026-04-16 03:17:33] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2026-04-16 03:17:33] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2026-04-16 03:17:33] ++ pwd
[2026-04-16 03:17:33] + RUNTIME_JOB_DIR=/var/lib/boinc/var/slot60/slots/16
[2026-04-16 03:17:33] + RUNTIME_JOB_STDIN=/dev/null
[2026-04-16 03:17:33] ++ pwd
[2026-04-16 03:17:33] + RUNTIME_JOB_STDOUT=/var/lib/boinc/var/slot60/slots/16/log.49263200._031162.job.log.1
[2026-04-16 03:17:33] ++ pwd
[2026-04-16 03:17:33] + RUNTIME_JOB_STDERR=/var/lib/boinc/var/slot60/slots/16/log.49263200._031162.job.log.1
[2026-04-16 03:17:33] ++ pwd
[2026-04-16 03:17:33] + RUNTIME_JOB_DIAG=/var/lib/boinc/var/slot60/slots/16.diag
[2026-04-16 03:17:33] + '[' '!' -z '' ']'
[2026-04-16 03:17:33] + RUNTIME_LOCAL_SCRATCH_DIR=
[2026-04-16 03:17:33] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2026-04-16 03:17:33] + RUNTIME_FRONTEND_SEES_NODE=
[2026-04-16 03:17:33] + RUNTIME_NODE_SEES_FRONTEND=yes
[2026-04-16 03:17:33] + '[' '!' -z '' ']'
[2026-04-16 03:17:33] + '[' -z yes ']'
[2026-04-16 03:17:33] ++ pwd
[2026-04-16 03:17:33] + RUNTIME_JOB_DIAG=/var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-16 03:17:33] + runtimeenvironments=
[2026-04-16 03:17:33] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2026-04-16 03:17:33] + RTE_function_0 1
[2026-04-16 03:17:33] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-16 03:17:33] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-16 03:17:33] + export BOINC_APP=ATLAS
[2026-04-16 03:17:33] + BOINC_APP=ATLAS
[2026-04-16 03:17:33] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-16 03:17:33] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-16 03:17:33] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-16 03:17:33] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-16 03:17:33] + '[' -z 1 ']'
[2026-04-16 03:17:33] + '[' 1 == 1 ']'
[2026-04-16 03:17:33] + shift
[2026-04-16 03:17:33] + export SITE_NAME=BOINC
[2026-04-16 03:17:33] + SITE_NAME=BOINC
[2026-04-16 03:17:33] + export ATLAS_LOCAL_AREA=/var/lib/boinc/var/slot60/slots/16/
[2026-04-16 03:17:33] + ATLAS_LOCAL_AREA=/var/lib/boinc/var/slot60/slots/16/
[2026-04-16 03:17:33] + '[' -e /var/lib/boinc/var/slot60/slots/16/init_data.xml ']'
[2026-04-16 03:17:33] + grep '<use_http_proxy/>' /var/lib/boinc/var/slot60/slots/16/init_data.xml
[2026-04-16 03:17:33] + '[' 0 -ne 0 ']'
[2026-04-16 03:17:33] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2026-04-16 03:17:33] + '[' -f /etc/os-release ']'
[2026-04-16 03:17:33] +++ cat /etc/os-release
[2026-04-16 03:17:33] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2026-04-16 03:17:33] +++ NAME='CentOS Linux'
[2026-04-16 03:17:33] +++ VERSION='7 (Core)'
[2026-04-16 03:17:33] +++ ID=centos
[2026-04-16 03:17:33] +++ ID_LIKE='rhel fedora'
[2026-04-16 03:17:33] +++ VERSION_ID=7
[2026-04-16 03:17:33] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2026-04-16 03:17:33] +++ ANSI_COLOR='0;31'
[2026-04-16 03:17:33] +++ CPE_NAME=cpe:/o:centos:centos:7
[2026-04-16 03:17:33] +++ HOME_URL=https://www.centos.org/
[2026-04-16 03:17:33] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2026-04-16 03:17:33] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2026-04-16 03:17:33] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2026-04-16 03:17:33] +++ REDHAT_SUPPORT_PRODUCT=centos
[2026-04-16 03:17:33] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2026-04-16 03:17:33] ++ echo 'CentOS Linux 7 (Core)'
[2026-04-16 03:17:33] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2026-04-16 03:17:33] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2026-04-16 03:17:33] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2026-04-16 03:17:33] + HOME=/var/lib/boinc/var/slot60/slots/16
[2026-04-16 03:17:33] + export HOME
[2026-04-16 03:17:33] + cd /var/lib/boinc/var/slot60/slots/16
[2026-04-16 03:17:33] + '[' '!' -z '' ']'
[2026-04-16 03:17:33] + '[' -z '' ']'
[2026-04-16 03:17:33] ++ /bin/hostname -f
[2026-04-16 03:17:33] + nodename=skurut28.grid.cesnet.cz
[2026-04-16 03:17:33] + echo nodename=skurut28.grid.cesnet.cz
[2026-04-16 03:17:33] + echo Processors=2
[2026-04-16 03:17:33] + echo Nodecount=1
[2026-04-16 03:17:33] + echo Benchmark=HEPSPEC:1.0
[2026-04-16 03:17:33] + executable=./runpilot2-wrapper.sh
[2026-04-16 03:17:33] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2026-04-16 03:17:33] ++ dd if=./runpilot2-wrapper.sh count=1
[2026-04-16 03:17:33] ++ head -n 1
[2026-04-16 03:17:33] ++ tr -d '\0'
[2026-04-16 03:17:33] + line1='#!/bin/bash'
[2026-04-16 03:17:33] ++ echo '#!/bin/bash'
[2026-04-16 03:17:33] ++ sed -n 's/^#! *//p'
[2026-04-16 03:17:33] + shebang=/bin/bash
[2026-04-16 03:17:33] ++ echo /bin/bash
[2026-04-16 03:17:33] ++ awk '{print $1}'
[2026-04-16 03:17:33] + interpreter=/bin/bash
[2026-04-16 03:17:33] + '[' /bin/bash = /usr/bin/env ']'
[2026-04-16 03:17:33] + '[' x/bin/bash = x ']'
[2026-04-16 03:17:33] + type /bin/bash
[2026-04-16 03:17:33] + '[' xgnutime = xgnutime ']'
[2026-04-16 03:17:33] + /usr/bin/time -o /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.12.4.1 -z -t --piloturl local --mute --container
[2026-04-16 03:17:33] + RESULT=2
[2026-04-16 03:17:33] + sed -i -e /nodename=/d /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-16 03:17:33] ++ grep domain_name init_data.xml
[2026-04-16 03:17:33] ++ awk -F '>' '{print $2}'
[2026-04-16 03:17:33] ++ awk -F '<' '{print $1}'
[2026-04-16 03:17:33] ++ sed -e 's# #_#g'
[2026-04-16 03:17:33] + hostname=skurut28.grid.cesnet.cz
[2026-04-16 03:17:33] ++ grep user_name init_data.xml
[2026-04-16 03:17:33] ++ awk -F '>' '{print $2}'
[2026-04-16 03:17:33] ++ awk -F '<' '{print $1}'
[2026-04-16 03:17:33] ++ sed -e 's# #_#g'
[2026-04-16 03:17:33] + username=praguelcg2
[2026-04-16 03:17:33] + nodename=praguelcg2@skurut28.grid.cesnet.cz
[2026-04-16 03:17:33] + echo nodename=praguelcg2@skurut28.grid.cesnet.cz
[2026-04-16 03:17:33] + '[' -n 12 ']'
[2026-04-16 03:17:33] + sed -i -e s/Processors=1/Processors=12/ /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-16 03:17:33] + echo exitcode=2
[2026-04-16 03:17:33] + runtimeenvironments=
[2026-04-16 03:17:33] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2026-04-16 03:17:33] + RTE_function_0 2
[2026-04-16 03:17:33] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-16 03:17:33] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-16 03:17:33] + export BOINC_APP=ATLAS
[2026-04-16 03:17:33] + BOINC_APP=ATLAS
[2026-04-16 03:17:33] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-16 03:17:33] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-16 03:17:33] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-16 03:17:33] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-16 03:17:33] + '[' -z 2 ']'
[2026-04-16 03:17:33] + '[' 2 == 1 ']'
[2026-04-16 03:17:33] + '[' 0 -ne 0 ']'
[2026-04-16 03:17:33] + echo 'zip all output files'
[2026-04-16 03:17:33] + flist='*.diag '
[2026-04-16 03:17:33] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-16 03:17:33] + '[' -e ./heartbeat.json ']'
[2026-04-16 03:17:33] + flist='*.diag  ./heartbeat.json'
[2026-04-16 03:17:33] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-16 03:17:33] + '[' -e ./output.list ']'
[2026-04-16 03:17:33] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-16 03:17:33] + '[' -e ./log.49263200._031162.job.log.1 ']'
[2026-04-16 03:17:33] + flist='*.diag  ./heartbeat.json ./log.49263200._031162.job.log.1'
[2026-04-16 03:17:33] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-16 03:17:33] + '[' -e ./log.49263200._031162.job.log.1 ']'
[2026-04-16 03:17:33] + flist='*.diag  ./heartbeat.json ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1'
[2026-04-16 03:17:33] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-16 03:17:33] + '[' -e ./gmlog/ ']'
[2026-04-16 03:17:33] + '[' -f output.list ']'
[2026-04-16 03:17:33] + tar cvf result.tar.gz 5463f45a6d31.diag ./heartbeat.json ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1
[2026-04-16 03:17:33] + '[' xgnutime = xcgroup ']'
[2026-04-16 03:17:33] + '[' -n '' ']'
[2026-04-16 03:17:33] + '[' -n '' ']'
[2026-04-16 03:17:33] ++ date +%s
[2026-04-16 03:17:33] + ACCOUNTING_ENDTIME=1776302253
[2026-04-16 03:17:33] ++ date -d '1970-01-01 UTC 1776302068 seconds' +%Y%m%d%H%M%SZ
[2026-04-16 03:17:33] + echo LRMSStartTime=20260416031428Z
[2026-04-16 03:17:33] ++ date -d '1970-01-01 UTC 1776302253 seconds' +%Y%m%d%H%M%SZ
[2026-04-16 03:17:33] + echo LRMSEndTime=20260416031733Z
[2026-04-16 03:17:33] + echo walltime=185
[2026-04-16 03:17:33] + echo exitcode=2
[2026-04-16 03:17:33] + exit 2
[2026-04-16 03:17:33] ./pilotlog.txt
[2026-04-16 03:17:33] ./log.49263200._031162.job.log.tgz.1
[2026-04-16 03:17:33] ./runtime_log.err
[2026-04-16 03:17:33] ./runtime_log
[2026-04-16 03:17:33] ./PanDA_Pilot-7083316583/pilotlog.txt
[2026-04-16 03:17:33] ./PanDA_Pilot-7083316583/prmon.log
[2026-04-16 03:17:33] ./PanDA_Pilot-7083316583/PoolFileCatalog.xml
[2026-04-16 03:17:33] ./PanDA_Pilot-7083316583/log.EVNTtoHITS
[2026-04-16 03:17:33] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2026-04-16 03:17:33] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2026-04-16 03:17:33] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2026-04-16 03:17:33] ./pilot3/pilot/util/realtimelogger.py
[2026-04-16 03:17:33] ./pilot3/pilot/util/lokirealtimelogger.py
[2026-04-16 03:17:33] ./pilot3/pilot/util/loggingsupport.py
[2026-04-16 03:17:33] ./log.49263200._031162.job.log.1
00:47:13 (941958): wrapper (7.7.26015): starting
00:47:13 (941958): wrapper: running run_atlas (--nthreads 12)
[2026-04-17 00:47:13] Arguments: --nthreads 12
[2026-04-17 00:47:13] Threads: 12
[2026-04-17 00:47:13] This job has been restarted, cleaning up previous attempt
[2026-04-17 00:47:13] Checking for CVMFS
[2026-04-17 00:47:13] No cvmfs_config command found, will try listing directly
[2026-04-17 00:47:14] CVMFS is ok
[2026-04-17 00:47:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-17 00:47:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-17 00:47:14] Further information can be found at the LHC@home message board.
[2026-04-17 00:47:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-17 00:47:14] Checking for apptainer binary...
[2026-04-17 00:47:14] which: no apptainer in ((null))
[2026-04-17 00:47:14] apptainer is not installed, using version from CVMFS
[2026-04-17 00:47:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-17 00:47:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-17 00:47:14] apptainer works
[2026-04-17 00:47:14] Set ATHENA_PROC_NUMBER=12
[2026-04-17 00:47:14] Set ATHENA_CORE_NUMBER=12
[2026-04-17 00:47:14] Starting ATLAS job with PandaID=7083316583
[2026-04-17 00:47:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-17 00:50:18] Job failed
[2026-04-17 00:50:18] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2026-04-17 00:50:18] ++ pwd
[2026-04-17 00:50:18] + export RUNTIME_CONFIG_DIR=/var/lib/boinc/var/slot60/slots/16/
[2026-04-17 00:50:18] + RUNTIME_CONFIG_DIR=/var/lib/boinc/var/slot60/slots/16/
[2026-04-17 00:50:18] + mv ATLAS.root_0 EVNT.49263198._000554.pool.root.1
[2026-04-17 00:50:18] mv: 'ATLAS.root_0' and 'EVNT.49263198._000554.pool.root.1' are the same file
[2026-04-17 00:50:18] + tar --strip-components=5 -xvf input.tar.gz
[2026-04-17 00:50:18] + umask 077
[2026-04-17 00:50:18] ++ date +%s
[2026-04-17 00:50:18] + ACCOUNTING_STARTTIME=1776379634
[2026-04-17 00:50:18] + echo 'Detecting resource accounting method available for the job.'
[2026-04-17 00:50:18] Detecting resource accounting method available for the job.
[2026-04-17 00:50:18] + JOB_ACCOUNTING=
[2026-04-17 00:50:18] + command -v arc-job-cgroup
[2026-04-17 00:50:18] + '[' -z '' ']'
[2026-04-17 00:50:18] + GNU_TIME=/usr/bin/time
[2026-04-17 00:50:18] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2026-04-17 00:50:18] Looking for /usr/bin/time tool for accounting measurements
[2026-04-17 00:50:18] + '[' '!' -z /usr/bin/time ']'
[2026-04-17 00:50:18] + /usr/bin/time --version
[2026-04-17 00:50:18] + echo 'GNU time found and will be used for job accounting.'
[2026-04-17 00:50:18] GNU time found and will be used for job accounting.
[2026-04-17 00:50:18] + JOB_ACCOUNTING=gnutime
[2026-04-17 00:50:18] + '[' -z gnutime ']'
[2026-04-17 00:50:18] + export PANDA_JSID=harvester-CERN_central_ACTA
[2026-04-17 00:50:18] + PANDA_JSID=harvester-CERN_central_ACTA
[2026-04-17 00:50:18] + export GTAG=http://aipanda404.cern.ch/data/jobs/2026-04-10/BOINC_MCORE/7083316583.out
[2026-04-17 00:50:18] + GTAG=http://aipanda404.cern.ch/data/jobs/2026-04-10/BOINC_MCORE/7083316583.out
[2026-04-17 00:50:18] + export PILOT_NOKILL=YES
[2026-04-17 00:50:18] + PILOT_NOKILL=YES
[2026-04-17 00:50:18] + export GRID_GLOBAL_JOBID=5463f45a6d31
[2026-04-17 00:50:18] + GRID_GLOBAL_JOBID=5463f45a6d31
[2026-04-17 00:50:18] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/5463f45a6d31
[2026-04-17 00:50:18] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/5463f45a6d31
[2026-04-17 00:50:18] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2026-04-17 00:50:18] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2026-04-17 00:50:18] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2026-04-17 00:50:18] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2026-04-17 00:50:18] ++ pwd
[2026-04-17 00:50:18] + RUNTIME_JOB_DIR=/var/lib/boinc/var/slot60/slots/16
[2026-04-17 00:50:18] + RUNTIME_JOB_STDIN=/dev/null
[2026-04-17 00:50:18] ++ pwd
[2026-04-17 00:50:18] + RUNTIME_JOB_STDOUT=/var/lib/boinc/var/slot60/slots/16/log.49263200._031162.job.log.1
[2026-04-17 00:50:18] ++ pwd
[2026-04-17 00:50:18] + RUNTIME_JOB_STDERR=/var/lib/boinc/var/slot60/slots/16/log.49263200._031162.job.log.1
[2026-04-17 00:50:18] ++ pwd
[2026-04-17 00:50:18] + RUNTIME_JOB_DIAG=/var/lib/boinc/var/slot60/slots/16.diag
[2026-04-17 00:50:18] + '[' '!' -z '' ']'
[2026-04-17 00:50:18] + RUNTIME_LOCAL_SCRATCH_DIR=
[2026-04-17 00:50:18] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2026-04-17 00:50:18] + RUNTIME_FRONTEND_SEES_NODE=
[2026-04-17 00:50:18] + RUNTIME_NODE_SEES_FRONTEND=yes
[2026-04-17 00:50:18] + '[' '!' -z '' ']'
[2026-04-17 00:50:18] + '[' -z yes ']'
[2026-04-17 00:50:18] ++ pwd
[2026-04-17 00:50:18] + RUNTIME_JOB_DIAG=/var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-17 00:50:18] + runtimeenvironments=
[2026-04-17 00:50:18] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2026-04-17 00:50:18] + RTE_function_0 1
[2026-04-17 00:50:18] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-17 00:50:18] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-17 00:50:18] + export BOINC_APP=ATLAS
[2026-04-17 00:50:18] + BOINC_APP=ATLAS
[2026-04-17 00:50:18] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-17 00:50:18] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-17 00:50:18] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-17 00:50:18] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-17 00:50:18] + '[' -z 1 ']'
[2026-04-17 00:50:18] + '[' 1 == 1 ']'
[2026-04-17 00:50:18] + shift
[2026-04-17 00:50:18] + export SITE_NAME=BOINC
[2026-04-17 00:50:18] + SITE_NAME=BOINC
[2026-04-17 00:50:18] + export ATLAS_LOCAL_AREA=/var/lib/boinc/var/slot60/slots/16/
[2026-04-17 00:50:18] + ATLAS_LOCAL_AREA=/var/lib/boinc/var/slot60/slots/16/
[2026-04-17 00:50:18] + '[' -e /var/lib/boinc/var/slot60/slots/16/init_data.xml ']'
[2026-04-17 00:50:18] + grep '<use_http_proxy/>' /var/lib/boinc/var/slot60/slots/16/init_data.xml
[2026-04-17 00:50:18] + '[' 0 -ne 0 ']'
[2026-04-17 00:50:18] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2026-04-17 00:50:18] + '[' -f /etc/os-release ']'
[2026-04-17 00:50:18] +++ cat /etc/os-release
[2026-04-17 00:50:18] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2026-04-17 00:50:18] +++ NAME='CentOS Linux'
[2026-04-17 00:50:18] +++ VERSION='7 (Core)'
[2026-04-17 00:50:18] +++ ID=centos
[2026-04-17 00:50:18] +++ ID_LIKE='rhel fedora'
[2026-04-17 00:50:18] +++ VERSION_ID=7
[2026-04-17 00:50:18] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2026-04-17 00:50:18] +++ ANSI_COLOR='0;31'
[2026-04-17 00:50:18] +++ CPE_NAME=cpe:/o:centos:centos:7
[2026-04-17 00:50:18] +++ HOME_URL=https://www.centos.org/
[2026-04-17 00:50:18] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2026-04-17 00:50:18] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2026-04-17 00:50:18] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2026-04-17 00:50:18] +++ REDHAT_SUPPORT_PRODUCT=centos
[2026-04-17 00:50:18] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2026-04-17 00:50:18] ++ echo 'CentOS Linux 7 (Core)'
[2026-04-17 00:50:18] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2026-04-17 00:50:18] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2026-04-17 00:50:18] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2026-04-17 00:50:18] + HOME=/var/lib/boinc/var/slot60/slots/16
[2026-04-17 00:50:18] + export HOME
[2026-04-17 00:50:18] + cd /var/lib/boinc/var/slot60/slots/16
[2026-04-17 00:50:18] + '[' '!' -z '' ']'
[2026-04-17 00:50:18] + '[' -z '' ']'
[2026-04-17 00:50:18] ++ /bin/hostname -f
[2026-04-17 00:50:18] + nodename=skurut28.grid.cesnet.cz
[2026-04-17 00:50:18] + echo nodename=skurut28.grid.cesnet.cz
[2026-04-17 00:50:18] + echo Processors=2
[2026-04-17 00:50:18] + echo Nodecount=1
[2026-04-17 00:50:18] + echo Benchmark=HEPSPEC:1.0
[2026-04-17 00:50:18] + executable=./runpilot2-wrapper.sh
[2026-04-17 00:50:18] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2026-04-17 00:50:18] ++ dd if=./runpilot2-wrapper.sh count=1
[2026-04-17 00:50:18] ++ head -n 1
[2026-04-17 00:50:18] ++ tr -d '\0'
[2026-04-17 00:50:18] + line1='#!/bin/bash'
[2026-04-17 00:50:18] ++ echo '#!/bin/bash'
[2026-04-17 00:50:18] ++ sed -n 's/^#! *//p'
[2026-04-17 00:50:18] + shebang=/bin/bash
[2026-04-17 00:50:18] ++ echo /bin/bash
[2026-04-17 00:50:18] ++ awk '{print $1}'
[2026-04-17 00:50:18] + interpreter=/bin/bash
[2026-04-17 00:50:18] + '[' /bin/bash = /usr/bin/env ']'
[2026-04-17 00:50:18] + '[' x/bin/bash = x ']'
[2026-04-17 00:50:18] + type /bin/bash
[2026-04-17 00:50:18] + '[' xgnutime = xgnutime ']'
[2026-04-17 00:50:18] + /usr/bin/time -o /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.12.4.1 -z -t --piloturl local --mute --container
[2026-04-17 00:50:18] + RESULT=2
[2026-04-17 00:50:18] + sed -i -e /nodename=/d /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-17 00:50:18] ++ grep domain_name init_data.xml
[2026-04-17 00:50:18] ++ awk -F '>' '{print $2}'
[2026-04-17 00:50:18] ++ awk -F '<' '{print $1}'
[2026-04-17 00:50:18] ++ sed -e 's# #_#g'
[2026-04-17 00:50:18] + hostname=skurut28.grid.cesnet.cz
[2026-04-17 00:50:18] ++ grep user_name init_data.xml
[2026-04-17 00:50:18] ++ awk -F '>' '{print $2}'
[2026-04-17 00:50:18] ++ awk -F '<' '{print $1}'
[2026-04-17 00:50:18] ++ sed -e 's# #_#g'
[2026-04-17 00:50:18] + username=praguelcg2
[2026-04-17 00:50:18] + nodename=praguelcg2@skurut28.grid.cesnet.cz
[2026-04-17 00:50:18] + echo nodename=praguelcg2@skurut28.grid.cesnet.cz
[2026-04-17 00:50:18] + '[' -n 12 ']'
[2026-04-17 00:50:18] + sed -i -e s/Processors=1/Processors=12/ /var/lib/boinc/var/slot60/slots/16/5463f45a6d31.diag
[2026-04-17 00:50:18] + echo exitcode=2
[2026-04-17 00:50:18] + runtimeenvironments=
[2026-04-17 00:50:18] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2026-04-17 00:50:18] + RTE_function_0 2
[2026-04-17 00:50:18] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-17 00:50:18] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2026-04-17 00:50:18] + export BOINC_APP=ATLAS
[2026-04-17 00:50:18] + BOINC_APP=ATLAS
[2026-04-17 00:50:18] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-17 00:50:18] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2026-04-17 00:50:18] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-17 00:50:18] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2026-04-17 00:50:18] + '[' -z 2 ']'
[2026-04-17 00:50:18] + '[' 2 == 1 ']'
[2026-04-17 00:50:18] + '[' 0 -ne 0 ']'
[2026-04-17 00:50:18] + echo 'zip all output files'
[2026-04-17 00:50:18] + flist='*.diag '
[2026-04-17 00:50:18] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-17 00:50:18] + '[' -e ./heartbeat.json ']'
[2026-04-17 00:50:18] + flist='*.diag  ./heartbeat.json'
[2026-04-17 00:50:18] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-17 00:50:18] + '[' -e ./output.list ']'
[2026-04-17 00:50:18] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-17 00:50:18] + '[' -e ./log.49263200._031162.job.log.1 ']'
[2026-04-17 00:50:18] + flist='*.diag  ./heartbeat.json ./log.49263200._031162.job.log.1'
[2026-04-17 00:50:18] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-17 00:50:18] + '[' -e ./log.49263200._031162.job.log.1 ']'
[2026-04-17 00:50:18] + flist='*.diag  ./heartbeat.json ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1'
[2026-04-17 00:50:18] + for f in ./heartbeat.json ./output.list ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1 ./gmlog/
[2026-04-17 00:50:18] + '[' -e ./gmlog/ ']'
[2026-04-17 00:50:18] + '[' -f output.list ']'
[2026-04-17 00:50:18] + tar cvf result.tar.gz 5463f45a6d31.diag ./heartbeat.json ./log.49263200._031162.job.log.1 ./log.49263200._031162.job.log.1
[2026-04-17 00:50:18] + '[' xgnutime = xcgroup ']'
[2026-04-17 00:50:18] + '[' -n '' ']'
[2026-04-17 00:50:18] + '[' -n '' ']'
[2026-04-17 00:50:18] ++ date +%s
[2026-04-17 00:50:18] + ACCOUNTING_ENDTIME=1776379818
[2026-04-17 00:50:18] ++ date -d '1970-01-01 UTC 1776379634 seconds' +%Y%m%d%H%M%SZ
[2026-04-17 00:50:18] + echo LRMSStartTime=20260417004714Z
[2026-04-17 00:50:18] ++ date -d '1970-01-01 UTC 1776379818 seconds' +%Y%m%d%H%M%SZ
[2026-04-17 00:50:18] + echo LRMSEndTime=20260417005018Z
[2026-04-17 00:50:18] + echo walltime=184
[2026-04-17 00:50:18] + echo exitcode=2
[2026-04-17 00:50:18] + exit 2
[2026-04-17 00:50:18] ./pilotlog.txt
[2026-04-17 00:50:18] ./log.49263200._031162.job.log.tgz.1
[2026-04-17 00:50:18] ./runtime_log.err
[2026-04-17 00:50:18] ./runtime_log
[2026-04-17 00:50:18] ./PanDA_Pilot-7083316583/pilotlog.txt
[2026-04-17 00:50:18] ./PanDA_Pilot-7083316583/prmon.log
[2026-04-17 00:50:18] ./PanDA_Pilot-7083316583/PoolFileCatalog.xml
[2026-04-17 00:50:18] ./PanDA_Pilot-7083316583/log.EVNTtoHITS
[2026-04-17 00:50:18] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2026-04-17 00:50:18] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2026-04-17 00:50:18] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2026-04-17 00:50:18] ./pilot3/pilot/util/realtimelogger.py
[2026-04-17 00:50:18] ./pilot3/pilot/util/lokirealtimelogger.py
[2026-04-17 00:50:18] ./pilot3/pilot/util/loggingsupport.py
[2026-04-17 00:50:18] ./log.49263200._031162.job.log.1
01:00:19 (941958): run_atlas exited; CPU time 6.483658
01:00:19 (941958): app exit status: 0x1
01:00:19 (941958): called boinc_finish(195)

</stderr_txt>
]]>

©2026 CERN