Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:07:06 (4057336): wrapper (7.7.26015): starting
00:07:06 (4057336): wrapper: running run_atlas (--nthreads 8)
[2026-04-10 00:07:06] Arguments: --nthreads 8
[2026-04-10 00:07:06] Threads: 8
[2026-04-10 00:07:06] Checking for CVMFS
[2026-04-10 00:07:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 00:07:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 00:07:08] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 00:07:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 00:07:10] 2.13.3.0 15733 222510 711680 158284 2 444 26768169 32935936 31573 16776704 0 1025007424 99.687 805562753 28153 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-10 00:07:10] CVMFS is ok
[2026-04-10 00:07:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 00:07:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 00:07:10] Further information can be found at the LHC@home message board.
[2026-04-10 00:07:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 00:07:10] Checking for apptainer binary...
[2026-04-10 00:07:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 00:07:11] Running /usr/bin/apptainer --version
[2026-04-10 00:07:11] apptainer version 1.4.5-2.el9
[2026-04-10 00:07:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 00:07:12] c-8-39.aglt2.org
[2026-04-10 00:07:12] apptainer works
[2026-04-10 00:07:13] Set ATHENA_PROC_NUMBER=8
[2026-04-10 00:07:13] Set ATHENA_CORE_NUMBER=8
[2026-04-10 00:07:13] Starting ATLAS job with PandaID=7083314549
[2026-04-10 00:07:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:30:58 (2102998): wrapper (7.7.26015): starting
07:30:58 (2102998): wrapper: running run_atlas (--nthreads 8)
[2026-04-10 07:30:58] Arguments: --nthreads 8
[2026-04-10 07:30:58] Threads: 8
[2026-04-10 07:30:58] This job has been restarted, cleaning up previous attempt
[2026-04-10 07:30:58] Checking for CVMFS
[2026-04-10 07:30:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 07:30:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 07:30:59] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 07:31:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 07:31:00] 2.13.3.0 15733 222954 715552 158297 0 407 21778812 32935937 23958 16776704 0 1027140843 99.686 808327503 28149 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-10 07:31:00] CVMFS is ok
[2026-04-10 07:31:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 07:31:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 07:31:00] Further information can be found at the LHC@home message board.
[2026-04-10 07:31:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 07:31:00] Checking for apptainer binary...
[2026-04-10 07:31:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 07:31:00] Running /usr/bin/apptainer --version
[2026-04-10 07:31:00] apptainer version 1.4.5-2.el9
[2026-04-10 07:31:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 07:31:01] c-8-39.aglt2.org
[2026-04-10 07:31:01] apptainer works
[2026-04-10 07:31:01] Set ATHENA_PROC_NUMBER=8
[2026-04-10 07:31:01] Set ATHENA_CORE_NUMBER=8
[2026-04-10 07:31:01] Starting ATLAS job with PandaID=7083314549
[2026-04-10 07:31:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 23:14:29]  *** The last 200 lines of the pilot log: ***
[2026-04-10 23:14:29] 2026-04-10 18:50:19,171 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-04-10 23:14:29] 2026-04-10 18:50:19,175 | INFO     | this job has now completed (state=finished)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,176 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,176 | INFO     | log transfer has been attempted: DONE
[2026-04-10 23:14:29] 2026-04-10 18:50:19,176 | INFO     | job 7083314549 has finished - writing final server update
[2026-04-10 23:14:29] 2026-04-10 18:50:19,176 | INFO     | total number of processed events: 400 (read)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,252 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7083314549/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,252 | INFO     | extracted standard info from prmon json
[2026-04-10 23:14:29] 2026-04-10 18:50:19,253 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 23:14:29] 2026-04-10 18:50:19,253 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 23:14:29] 2026-04-10 18:50:19,253 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 23:14:29] 2026-04-10 18:50:19,297 | INFO     | fitting pss+swap vs Time
[2026-04-10 23:14:29] 2026-04-10 18:50:19,298 | INFO     | sum of square deviations: 24999225200.435146
[2026-04-10 23:14:29] 2026-04-10 18:50:19,305 | INFO     | sum of deviations: 35212178956.537155
[2026-04-10 23:14:29] 2026-04-10 18:50:19,306 | INFO     | mean x (centered): 0.0
[2026-04-10 23:14:29] 2026-04-10 18:50:19,306 | INFO     | mean y: 2501213.712962963
[2026-04-10 23:14:29] 2026-04-10 18:50:19,306 | INFO     | intersect: 2501213.712962963
[2026-04-10 23:14:29] 2026-04-10 18:50:19,307 | INFO     | chi2: 3.411237855328629
[2026-04-10 23:14:29] 2026-04-10 18:50:19,308 | INFO     | sum of square deviations: 24141264590.42171
[2026-04-10 23:14:29] 2026-04-10 18:50:19,314 | INFO     | sum of deviations: 97441256560.48468
[2026-04-10 23:14:29] 2026-04-10 18:50:19,314 | INFO     | mean x (centered): 0.0
[2026-04-10 23:14:29] 2026-04-10 18:50:19,315 | INFO     | mean y: 2512195.149882904
[2026-04-10 23:14:29] 2026-04-10 18:50:19,315 | INFO     | intersect: 2512195.149882904
[2026-04-10 23:14:29] 2026-04-10 18:50:19,316 | INFO     | chi2: 1.5749628810544374
[2026-04-10 23:14:29] 2026-04-10 18:50:19,316 | INFO     | current chi2=1.5749628810544374 (change=53.83016524062613 %)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,317 | INFO     | sum of square deviations: 23303112480.675495
[2026-04-10 23:14:29] 2026-04-10 18:50:19,323 | INFO     | sum of deviations: 96302406813.70375
[2026-04-10 23:14:29] 2026-04-10 18:50:19,323 | INFO     | mean x (centered): 0.0
[2026-04-10 23:14:29] 2026-04-10 18:50:19,323 | INFO     | mean y: 2511987.9312796206
[2026-04-10 23:14:29] 2026-04-10 18:50:19,324 | INFO     | intersect: 2511987.9312796206
[2026-04-10 23:14:29] 2026-04-10 18:50:19,325 | INFO     | chi2: 1.5749520097010383
[2026-04-10 23:14:29] 2026-04-10 18:50:19,325 | INFO     | current chi2=1.5749520097010383 (change=0.0006902609280402393 %)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,325 | INFO     | right removable region: 421
[2026-04-10 23:14:29] 2026-04-10 18:50:19,326 | INFO     | sum of square deviations: 24141108918.027946
[2026-04-10 23:14:29] 2026-04-10 18:50:19,332 | INFO     | sum of deviations: -38617962675.60889
[2026-04-10 23:14:29] 2026-04-10 18:50:19,333 | INFO     | mean x (centered): 0.0
[2026-04-10 23:14:29] 2026-04-10 18:50:19,333 | INFO     | mean y: 2514280.545667447
[2026-04-10 23:14:29] 2026-04-10 18:50:19,333 | INFO     | intersect: 2514280.545667447
[2026-04-10 23:14:29] 2026-04-10 18:50:19,334 | INFO     | chi2: 1.9210681605290996
[2026-04-10 23:14:29] 2026-04-10 18:50:19,334 | INFO     | current chi2=1.9210681605290996 (change=43.684133384946 %)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,335 | INFO     | sum of square deviations: 23302853473.063816
[2026-04-10 23:14:29] 2026-04-10 18:50:19,341 | INFO     | sum of deviations: -53479035362.10426
[2026-04-10 23:14:29] 2026-04-10 18:50:19,341 | INFO     | mean x (centered): 0.0
[2026-04-10 23:14:29] 2026-04-10 18:50:19,341 | INFO     | mean y: 2516975.886255924
[2026-04-10 23:14:29] 2026-04-10 18:50:19,342 | INFO     | intersect: 2516975.886255924
[2026-04-10 23:14:29] 2026-04-10 18:50:19,343 | INFO     | chi2: 1.8679977623249644
[2026-04-10 23:14:29] 2026-04-10 18:50:19,343 | INFO     | current chi2=1.8679977623249644 (change=2.762546342422257 %)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,343 | INFO     | left removable region: 10
[2026-04-10 23:14:29] 2026-04-10 18:50:19,344 | INFO     | sum of square deviations: 21527728002.12188
[2026-04-10 23:14:29] 2026-04-10 18:50:19,350 | INFO     | sum of deviations: 8237586610.968367
[2026-04-10 23:14:29] 2026-04-10 18:50:19,371 | INFO     | mean x (centered): 0.0
[2026-04-10 23:14:29] 2026-04-10 18:50:19,372 | INFO     | mean y: 2528391.194647202
[2026-04-10 23:14:29] 2026-04-10 18:50:19,372 | INFO     | intersect: 2528391.194647202
[2026-04-10 23:14:29] 2026-04-10 18:50:19,373 | INFO     | chi2: 0.0074426827161106456
[2026-04-10 23:14:29] 2026-04-10 18:50:19,373 | INFO     | current memory leak: 0.38 B/s (using 411 data points, chi2=0.01)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,374 | INFO     | could have reported an average CPU frequency of 2717 MHz (18 samples)
[2026-04-10 23:14:29] 2026-04-10 18:50:19,412 | INFO     | ..............................
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . Timing measurements:
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . get job = 0 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . initial setup = 2 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . payload setup = 15 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . stage-in = 0 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . payload execution = 26299 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,413 | INFO     | . stage-out = 7 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,414 | INFO     | . log creation = 0 s
[2026-04-10 23:14:29] 2026-04-10 18:50:19,414 | INFO     | ..............................
[2026-04-10 23:14:29] 2026-04-10 18:50:20,209 | INFO     | 
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | job summary report
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | --------------------------------------------------
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | PanDA job id: 7083314549
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | task id: 49263200
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | errors: (none)
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 23:14:29] 2026-04-10 18:50:20,210 | INFO     | pilot state: finished 
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | transexitcode: 0
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | exeerrorcode: 0
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | exeerrordiag: 
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | exitcode: 0
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | exitmsg: OK
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | cpuconsumptiontime: 55792 s
[2026-04-10 23:14:29] 2026-04-10 18:50:20,211 | INFO     | nevents: 400
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | neventsw: 0
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | pid: 2122503
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | pgrp: 2122503
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | corecount: 8
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | event service: False
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | sizes: {0: 2279611, 1: 2281496, 2: 2281496, 26319: 2317535, 26320: 2317534, 26329: 2326588, 26331: 2326772, 26335: 2326966}
[2026-04-10 23:14:29] 2026-04-10 18:50:20,212 | INFO     | --------------------------------------------------
[2026-04-10 23:14:29] 2026-04-10 18:50:20,213 | INFO     | 
[2026-04-10 23:14:29] 2026-04-10 18:50:20,213 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-04-10 23:14:29] 2026-04-10 18:50:20,293 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,293 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,293 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 23:14:29] 2026-04-10 18:50:20,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,296 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 23:14:29] 2026-04-10 18:50:20,296 | INFO     | job 7083314549 has completed (purged errors)
[2026-04-10 23:14:29] 2026-04-10 18:50:20,296 | INFO     | overall cleanup function is called
[2026-04-10 23:14:29] 2026-04-10 18:50:21,305 | INFO     | --- collectZombieJob: --- 10, [2122503]
[2026-04-10 23:14:29] 2026-04-10 18:50:21,306 | INFO     | zombie collector waiting for pid 2122503
[2026-04-10 23:14:29] 2026-04-10 18:50:21,306 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 23:14:29] 2026-04-10 18:50:21,306 | INFO     | collected zombie processes
[2026-04-10 23:14:29] 2026-04-10 18:50:21,306 | INFO     | will attempt to kill all subprocesses of pid=2122503
[2026-04-10 23:14:29] 2026-04-10 18:50:23,952 | INFO     | process IDs to be killed: [2122503] (in reverse order)
[2026-04-10 23:14:29] 2026-04-10 18:50:24,246 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 23:14:29] 2026-04-10 18:50:24,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 23:14:29] 2026-04-10 18:50:24,409 | INFO     | did not find any defunct processes belonging to 2122503
[2026-04-10 23:14:29] 2026-04-10 18:50:24,456 | INFO     | did not find any defunct processes belonging to 2122503
[2026-04-10 23:14:29] 2026-04-10 18:50:24,457 | INFO     | Ready for new job
[2026-04-10 23:14:29] 2026-04-10 18:50:24,459 | INFO     | **************************************
[2026-04-10 23:14:29] 2026-04-10 18:50:24,459 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 23:14:29] 2026-04-10 18:50:24,459 | INFO     | **************************************
[2026-04-10 23:14:29] 2026-04-10 18:50:24,459 | INFO     | 
[2026-04-10 23:14:29] 2026-04-10 18:50:24,462 | INFO     | architecture information:
[2026-04-10 23:14:29] 2026-04-10 18:50:24,468 | INFO     | executing command: cat /etc/os-release
[2026-04-10 23:14:29] 2026-04-10 18:50:24,564 | INFO     | cat /etc/os-release:
[2026-04-10 23:14:29] NAME="CentOS Linux"
[2026-04-10 23:14:29] VERSION="7 (Core)"
[2026-04-10 23:14:29] ID="centos"
[2026-04-10 23:14:29] ID_LIKE="rhel fedora"
[2026-04-10 23:14:29] VERSION_ID="7"
[2026-04-10 23:14:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 23:14:29] ANSI_COLOR="0;31"
[2026-04-10 23:14:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 23:14:29] HOME_URL="https://www.centos.org/"
[2026-04-10 23:14:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 23:14:29] 
[2026-04-10 23:14:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 23:14:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 23:14:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 23:14:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 23:14:29] 
[2026-04-10 23:14:29] 2026-04-10 18:50:24,565 | INFO     | **************************************
[2026-04-10 23:14:29] 2026-04-10 18:50:25,073 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-04-10 23:14:29] 2026-04-10 18:50:25,126 | INFO     | sufficient remaining disk space (74690068480 B)
[2026-04-10 23:14:29] 2026-04-10 18:50:25,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 23:14:29] 2026-04-10 18:50:25,127 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 23:14:29] 2026-04-10 18:50:25,127 | INFO     | update_server=False
[2026-04-10 23:14:29] 2026-04-10 18:50:25,127 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 23:14:29] 2026-04-10 18:50:25,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 23:14:29] 2026-04-10 18:50:25,129 | INFO     | aborting loop
[2026-04-10 23:14:29] 2026-04-10 18:50:25,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 23:14:29] 2026-04-10 18:50:25,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 23:14:29] 2026-04-10 18:50:25,540 | INFO     | all data control threads have been joined
[2026-04-10 23:14:29] 2026-04-10 18:50:26,134 | INFO     | [job] queue monitor thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,139 | INFO     | [job] retrieve thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,146 | INFO     | [job] job monitor thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,196 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,204 | INFO     | [job] validate thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,214 | INFO     | [data] copytool_in thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,552 | INFO     | all payload control threads have been joined
[2026-04-10 23:14:29] 2026-04-10 18:50:26,554 | INFO     | [payload] validate_post thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,571 | INFO     | [data] control thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,680 | INFO     | [payload] failed_post thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:26,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 23:14:29] 2026-04-10 18:50:26,873 | INFO     | all job control threads have been joined
[2026-04-10 23:14:29] 2026-04-10 18:50:26,922 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:27,176 | INFO     | [data] copytool_out thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:27,183 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:27,193 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:27,557 | INFO     | [payload] control thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:27,879 | INFO     | [job] control thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:30,800 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 23:14:29] 2026-04-10 18:50:56,731 | INFO     | PID=2114396 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 23:14:29] 2026-04-10 18:50:56,731 | INFO     | .. there are 37 such processes running
[2026-04-10 23:14:29] 2026-04-10 18:50:56,731 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 23:14:29] 2026-04-10 18:50:56,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 23:14:29] 2026-04-10 18:50:56,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 23:14:29] 2026-04-10 18:51:13,658 | INFO     | [monitor] cgroup control has ended
[2026-04-10 23:14:29] 2026-04-10 18:51:14,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795472815936)>', '<ExcThread(monitor, started 139794977896192)>']
[2026-04-10 23:14:29] 2026-04-10 18:51:14,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 23:14:29] 2026-04-10 18:51:14,868 | INFO     | [monitor] control thread has ended
[2026-04-10 23:14:29] 2026-04-10 18:51:19,640 | INFO     | all workflow threads have been joined
[2026-04-10 23:14:29] 2026-04-10 18:51:19,641 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 23:14:29] 2026-04-10 18:51:19,641 | INFO     | traces error code: 0
[2026-04-10 23:14:29] 2026-04-10 18:51:19,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 23:14:29] 2026-04-10 18:51:20,009 [wrapper] ==== pilot stdout END ====
[2026-04-10 23:14:29] 2026-04-10 18:51:20,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 23:14:29] 2026-04-10 18:51:20,060 [wrapper] pilotpid: 2114396
[2026-04-10 23:14:29] 2026-04-10 18:51:20,100 [wrapper] Pilot exit status: 0
[2026-04-10 23:14:29] 2026-04-10 18:51:20,204 [wrapper] pandaids: 7083314549 7083314549
[2026-04-10 23:14:29] 2026-04-10 18:51:20,444 [wrapper] cleanup supervisor_pilot 3469623 2114397
[2026-04-10 23:14:29] 2026-04-10 18:51:20,447 [wrapper] Test setup, not cleaning
[2026-04-10 23:14:29] 2026-04-10 18:51:20,450 [wrapper] apfmon messages muted
[2026-04-10 23:14:29] 2026-04-10 18:51:20,454 [wrapper] ==== wrapper stdout END ====
[2026-04-10 23:14:29] 2026-04-10 18:51:20,457 [wrapper] ==== wrapper stderr END ====
[2026-04-10 23:14:29]  *** Error codes and diagnostics ***
[2026-04-10 23:14:29]     "exeErrorCode": 0,
[2026-04-10 23:14:29]     "pilotErrorCode": 0,
[2026-04-10 23:14:29]  *** Listing of results directory ***
[2026-04-10 23:14:29] total 634232
[2026-04-10 23:14:29] drwx------. 5 boincer umatlas      4096 Apr  1 08:07 pilot3
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas    644190 Apr  9 21:35 pilot3.tar.gz
[2026-04-10 23:14:29] -rwx------. 1 boincer umatlas     36322 Apr  9 21:37 runpilot2-wrapper.sh
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas      5094 Apr  9 21:37 queuedata.json
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas       100 Apr 10 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 23:14:29] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 10 00:07 run_atlas
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas       105 Apr 10 00:07 job.xml
[2026-04-10 23:14:29] -rw-r--r--. 3 boincer umatlas 223802246 Apr 10 00:07 EVNT.49263198._000542.pool.root.1
[2026-04-10 23:14:29] -rw-r--r--. 3 boincer umatlas 223802246 Apr 10 00:07 ATLAS.root_0
[2026-04-10 23:14:29] -rw-r--r--. 2 boincer umatlas     15665 Apr 10 00:07 start_atlas.sh
[2026-04-10 23:14:29] drwxrwx--x. 2 boincer umatlas      4096 Apr 10 00:07 shared
[2026-04-10 23:14:29] -rw-r--r--. 2 boincer umatlas    656935 Apr 10 00:07 input.tar.gz
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas         0 Apr 10 00:07 boinc_lockfile
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas      2575 Apr 10 07:31 pandaJob.out
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas        57 Apr 10 07:31 setup.sh.local
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas    997884 Apr 10 07:31 agis_schedconf.cvmfs.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas       440 Apr 10 07:31 workernode_map.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas 193116430 Apr 10 14:48 HITS.49263200._030872.pool.root.1
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas       489 Apr 10 14:49 boinc_task_state.xml
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas      1056 Apr 10 14:49 memory_monitor_summary.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas   1511579 Apr 10 14:50 agis_ddmendpoints.agis.ALL.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas    480941 Apr 10 14:50 log.49263200._030872.job.log.tgz.1
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas        97 Apr 10 14:50 pilot_heartbeat.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas      6408 Apr 10 14:50 heartbeat_new.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas      6299 Apr 10 14:50 heartbeat.json
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas      4819 Apr 10 14:51 pilotlog.txt
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas   1849322 Apr 10 14:51 log.49263200._030872.job.log.1
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas       357 Apr 10 14:51 output.list
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas       410 Apr 10 14:51 runtime_log
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas   2344960 Apr 10 14:51 result.tar.gz
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas      9039 Apr 10 14:51 runtime_log.err
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas       782 Apr 10 14:51 544f55fdcac5.diag
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas      6529 Apr 10 23:11 init_data.xml
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas        28 Apr 10 23:14 wrapper_checkpoint.txt
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas      8192 Apr 10 23:14 boinc_mmap_file
[2026-04-10 23:14:29] -rw-r--r--. 1 boincer umatlas     23229 Apr 10 23:14 stderr.txt
[2026-04-10 23:14:29] HITS file was successfully produced:
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas 193116430 Apr 10 14:48 shared/HITS.pool.root.1
[2026-04-10 23:14:29]  *** Contents of shared directory: ***
[2026-04-10 23:14:29] total 410112
[2026-04-10 23:14:29] -rw-r--r--. 3 boincer umatlas 223802246 Apr 10 00:07 ATLAS.root_0
[2026-04-10 23:14:29] -rw-r--r--. 2 boincer umatlas     15665 Apr 10 00:07 start_atlas.sh
[2026-04-10 23:14:29] -rw-r--r--. 2 boincer umatlas    656935 Apr 10 00:07 input.tar.gz
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas 193116430 Apr 10 14:48 HITS.pool.root.1
[2026-04-10 23:14:29] -rw-------. 1 boincer umatlas   2344960 Apr 10 14:51 result.tar.gz
23:14:31 (2102998): run_atlas exited; CPU time 56955.959310
23:14:31 (2102998): called boinc_finish(0)

</stderr_txt>
]]>

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