Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:35:45 (4043): wrapper (7.7.26015): starting
02:35:45 (4043): wrapper: running run_atlas (--nthreads 4)
[2026-04-10 02:35:45] Arguments: --nthreads 4
[2026-04-10 02:35:45] Threads: 4
[2026-04-10 02:35:45] Checking for CVMFS
[2026-04-10 02:35:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 02:36:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 02:36:05] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 02:36:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 02:36:05] 2.11.5.0 4251 0 23832 158280 3 1 2992885 4096000 0 130560 0 0 0.000 1337 2723 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2026-04-10 02:36:05] CVMFS is ok
[2026-04-10 02:36:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 02:36:05] Checking for apptainer binary...
[2026-04-10 02:36:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 02:36:05] Running /usr/bin/apptainer --version
[2026-04-10 02:36:06] apptainer version 1.0.3
[2026-04-10 02:36:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 02:36:07] TeeC28
[2026-04-10 02:36:07] apptainer works
[2026-04-10 02:36:07] Set ATHENA_PROC_NUMBER=4
[2026-04-10 02:36:07] Set ATHENA_CORE_NUMBER=4
[2026-04-10 02:36:07] Starting ATLAS job with PandaID=7083286167
[2026-04-10 02:36:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/users/jmp/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 05:23:11]  *** The last 200 lines of the pilot log: ***
[2026-04-10 05:23:11] 2026-04-10 04:22:23,636 | INFO     | reading metadata from: /home/m/users/jmp/BOINC/slots/0/PanDA_Pilot-7083286167/jobReport.json
[2026-04-10 05:23:11] 2026-04-10 04:22:23,638 | INFO     | added worker_node to metadata from /home/m/users/jmp/BOINC/slots/0/workernode_map.json
[2026-04-10 05:23:11] 2026-04-10 04:22:23,639 | INFO     | this job has now completed (state=finished)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,639 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,639 | INFO     | log transfer has been attempted: DONE
[2026-04-10 05:23:11] 2026-04-10 04:22:23,639 | INFO     | job 7083286167 has finished - writing final server update
[2026-04-10 05:23:11] 2026-04-10 04:22:23,639 | INFO     | total number of processed events: 400 (read)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,657 | INFO     | using path: /home/m/users/jmp/BOINC/slots/0/PanDA_Pilot-7083286167/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,658 | INFO     | extracted standard info from prmon json
[2026-04-10 05:23:11] 2026-04-10 04:22:23,658 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 05:23:11] 2026-04-10 04:22:23,658 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 05:23:11] 2026-04-10 04:22:23,658 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 05:23:11] 2026-04-10 04:22:23,662 | INFO     | fitting pss+swap vs Time
[2026-04-10 05:23:11] 2026-04-10 04:22:23,663 | INFO     | sum of square deviations: 1343560016.748466
[2026-04-10 05:23:11] 2026-04-10 04:22:23,664 | INFO     | sum of deviations: -16429553504.791409
[2026-04-10 05:23:11] 2026-04-10 04:22:23,664 | INFO     | mean x (centered): 0.0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,664 | INFO     | mean y: 2387896.582822086
[2026-04-10 05:23:11] 2026-04-10 04:22:23,665 | INFO     | intersect: 2387896.582822086
[2026-04-10 05:23:11] 2026-04-10 04:22:23,665 | INFO     | chi2: 1.7031667199498608
[2026-04-10 05:23:11] 2026-04-10 04:22:23,665 | INFO     | sum of square deviations: 1223759522.943035
[2026-04-10 05:23:11] 2026-04-10 04:22:23,667 | INFO     | sum of deviations: -16026459775.265825
[2026-04-10 05:23:11] 2026-04-10 04:22:23,667 | INFO     | mean x (centered): 0.0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,667 | INFO     | mean y: 2388421.088607595
[2026-04-10 05:23:11] 2026-04-10 04:22:23,667 | INFO     | intersect: 2388421.088607595
[2026-04-10 05:23:11] 2026-04-10 04:22:23,668 | INFO     | chi2: 1.697019004579845
[2026-04-10 05:23:11] 2026-04-10 04:22:23,668 | INFO     | current chi2=1.697019004579845 (change=0.3609579319514167 %)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,668 | INFO     | right removable region: 157
[2026-04-10 05:23:11] 2026-04-10 04:22:23,668 | INFO     | sum of square deviations: 1223709502.943035
[2026-04-10 05:23:11] 2026-04-10 04:22:23,669 | INFO     | sum of deviations: -35425545068.49367
[2026-04-10 05:23:11] 2026-04-10 04:22:23,670 | INFO     | mean x (centered): 0.0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,670 | INFO     | mean y: 2411594.164556962
[2026-04-10 05:23:11] 2026-04-10 04:22:23,670 | INFO     | intersect: 2411594.164556962
[2026-04-10 05:23:11] 2026-04-10 04:22:23,670 | INFO     | chi2: 0.3307934998948452
[2026-04-10 05:23:11] 2026-04-10 04:22:23,670 | INFO     | current chi2=0.3307934998948452 (change=80.5777381615005 %)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,670 | INFO     | sum of square deviations: 1111207964.0522854
[2026-04-10 05:23:11] 2026-04-10 04:22:23,672 | INFO     | sum of deviations: -28432649503.68628
[2026-04-10 05:23:11] 2026-04-10 04:22:23,672 | INFO     | mean x (centered): 0.0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,672 | INFO     | mean y: 2402083.2156862747
[2026-04-10 05:23:11] 2026-04-10 04:22:23,672 | INFO     | intersect: 2402083.2156862747
[2026-04-10 05:23:11] 2026-04-10 04:22:23,672 | INFO     | chi2: 0.3081771903979614
[2026-04-10 05:23:11] 2026-04-10 04:22:23,672 | INFO     | current chi2=0.3081771903979614 (change=6.8369872757696974 %)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,673 | INFO     | left removable region: 10
[2026-04-10 05:23:11] 2026-04-10 04:22:23,673 | INFO     | sum of square deviations: 985203730.136058
[2026-04-10 05:23:11] 2026-04-10 04:22:23,674 | INFO     | sum of deviations: -27487316345.476192
[2026-04-10 05:23:11] 2026-04-10 04:22:23,674 | INFO     | mean x (centered): 0.0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,674 | INFO     | mean y: 2403475.1904761903
[2026-04-10 05:23:11] 2026-04-10 04:22:23,674 | INFO     | intersect: 2403475.1904761903
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | chi2: 0.29881199126122887
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | current memory leak: -27.90 B/s (using 147 data points, chi2=0.30)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | could have reported an average CPU frequency of 3200 MHz (9 samples)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | ..............................
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | . Timing measurements:
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | . get job = 0 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | . initial setup = 10 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | . payload setup = 7 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,675 | INFO     | . stage-in = 0 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,676 | INFO     | . payload execution = 9908 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,676 | INFO     | . stage-out = 0 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,676 | INFO     | . log creation = 0 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,676 | INFO     | ..............................
[2026-04-10 05:23:11] 2026-04-10 04:22:23,773 | INFO     | 
[2026-04-10 05:23:11] 2026-04-10 04:22:23,773 | INFO     | job summary report
[2026-04-10 05:23:11] 2026-04-10 04:22:23,773 | INFO     | --------------------------------------------------
[2026-04-10 05:23:11] 2026-04-10 04:22:23,773 | INFO     | PanDA job id: 7083286167
[2026-04-10 05:23:11] 2026-04-10 04:22:23,773 | INFO     | task id: 49263191
[2026-04-10 05:23:11] 2026-04-10 04:22:23,773 | INFO     | errors: (none)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | pilot state: finished 
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | transexitcode: 0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | exeerrorcode: 0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | exeerrordiag: 
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | exitcode: 0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | exitmsg: OK
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | cpuconsumptiontime: 37677 s
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | nevents: 400
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | neventsw: 0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | pid: 12704
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | pgrp: 12704
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | corecount: 4
[2026-04-10 05:23:11] 2026-04-10 04:22:23,774 | INFO     | event service: False
[2026-04-10 05:23:11] 2026-04-10 04:22:23,775 | INFO     | sizes: {0: 2279678, 1: 2281507, 12: 2281507, 9919: 2310054, 9921: 2319070, 9923: 2319512}
[2026-04-10 05:23:11] 2026-04-10 04:22:23,775 | INFO     | --------------------------------------------------
[2026-04-10 05:23:11] 2026-04-10 04:22:23,775 | INFO     | 
[2026-04-10 05:23:11] 2026-04-10 04:22:23,775 | INFO     | executing command: ls -lF /home/m/users/jmp/BOINC/slots/0
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 05:23:11] 2026-04-10 04:22:23,784 | INFO     | job 7083286167 has completed (purged errors)
[2026-04-10 05:23:11] 2026-04-10 04:22:23,785 | INFO     | overall cleanup function is called
[2026-04-10 05:23:11] 2026-04-10 04:22:23,909 | INFO     | PID=8324 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-10 05:23:11] 2026-04-10 04:22:24,791 | INFO     | --- collectZombieJob: --- 10, [12704]
[2026-04-10 05:23:11] 2026-04-10 04:22:24,792 | INFO     | zombie collector waiting for pid 12704
[2026-04-10 05:23:11] 2026-04-10 04:22:24,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 05:23:11] 2026-04-10 04:22:24,793 | INFO     | collected zombie processes
[2026-04-10 05:23:11] 2026-04-10 04:22:24,793 | INFO     | will attempt to kill all subprocesses of pid=12704
[2026-04-10 05:23:11] 2026-04-10 04:22:24,863 | INFO     | process IDs to be killed: [12704] (in reverse order)
[2026-04-10 05:23:11] 2026-04-10 04:22:24,888 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 05:23:11] 2026-04-10 04:22:24,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 05:23:11] 2026-04-10 04:22:24,890 | INFO     | did not find any defunct processes belonging to 12704
[2026-04-10 05:23:11] 2026-04-10 04:22:24,891 | INFO     | did not find any defunct processes belonging to 12704
[2026-04-10 05:23:11] 2026-04-10 04:22:24,891 | INFO     | Ready for new job
[2026-04-10 05:23:11] 2026-04-10 04:22:24,892 | INFO     | **************************************
[2026-04-10 05:23:11] 2026-04-10 04:22:24,893 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 05:23:11] 2026-04-10 04:22:24,893 | INFO     | **************************************
[2026-04-10 05:23:11] 2026-04-10 04:22:24,893 | INFO     | 
[2026-04-10 05:23:11] 2026-04-10 04:22:24,912 | INFO     | architecture information:
[2026-04-10 05:23:11] 2026-04-10 04:22:24,913 | INFO     | executing command: cat /etc/os-release
[2026-04-10 05:23:11] 2026-04-10 04:22:24,920 | INFO     | cat /etc/os-release:
[2026-04-10 05:23:11] NAME="CentOS Linux"
[2026-04-10 05:23:11] VERSION="7 (Core)"
[2026-04-10 05:23:11] ID="centos"
[2026-04-10 05:23:11] ID_LIKE="rhel fedora"
[2026-04-10 05:23:11] VERSION_ID="7"
[2026-04-10 05:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 05:23:11] ANSI_COLOR="0;31"
[2026-04-10 05:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 05:23:11] HOME_URL="https://www.centos.org/"
[2026-04-10 05:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 05:23:11] 
[2026-04-10 05:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 05:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 05:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 05:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 05:23:11] 
[2026-04-10 05:23:11] 2026-04-10 04:22:24,920 | INFO     | **************************************
[2026-04-10 05:23:11] 2026-04-10 04:22:25,421 | INFO     | executing command: df -mP /home/m/users/jmp/BOINC/slots/0
[2026-04-10 05:23:11] 2026-04-10 04:22:25,432 | INFO     | sufficient remaining disk space (414009262080 B)
[2026-04-10 05:23:11] 2026-04-10 04:22:25,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 05:23:11] 2026-04-10 04:22:25,432 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 05:23:11] 2026-04-10 04:22:25,432 | INFO     | update_server=False
[2026-04-10 05:23:11] 2026-04-10 04:22:25,433 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 05:23:11] 2026-04-10 04:22:25,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 05:23:11] 2026-04-10 04:22:25,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 05:23:11] 2026-04-10 04:22:25,433 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 05:23:11] 2026-04-10 04:22:25,491 | INFO     | job.realtimelogging is not enabled
[2026-04-10 05:23:11] 2026-04-10 04:22:25,496 | INFO     | all data control threads have been joined
[2026-04-10 05:23:11] 2026-04-10 04:22:25,646 | INFO     | all job control threads have been joined
[2026-04-10 05:23:11] 2026-04-10 04:22:26,227 | INFO     | all payload control threads have been joined
[2026-04-10 05:23:11] 2026-04-10 04:22:26,439 | INFO     | [job] retrieve thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:26,440 | INFO     | [job] queue monitor thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:26,497 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:26,498 | INFO     | [data] control thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:26,652 | INFO     | [job] control thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:26,773 | WARNING  | process 12704 can no longer be monitored (due to stat problems) - aborting
[2026-04-10 05:23:11] 2026-04-10 04:22:26,815 | INFO     | using path: /home/m/users/jmp/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 05:23:11] 2026-04-10 04:22:26,873 | INFO     | number of running child processes to parent process 12704: 1
[2026-04-10 05:23:11] 2026-04-10 04:22:26,873 | INFO     | maximum number of monitored processes: 6
[2026-04-10 05:23:11] 2026-04-10 04:22:26,873 | INFO     | aborting job monitoring since job object (job id=7083286167) has expired
[2026-04-10 05:23:11] 2026-04-10 04:22:26,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 05:23:11] 2026-04-10 04:22:26,874 | INFO     | will abort loop
[2026-04-10 05:23:11] 2026-04-10 04:22:27,090 | INFO     | [payload] failed_post thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,113 | INFO     | [job] validate thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,157 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,233 | INFO     | [payload] control thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,440 | INFO     | [data] copytool_out thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,504 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,638 | INFO     | [payload] validate_post thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,785 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,879 | INFO     | [job] job monitor thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:27,935 | INFO     | [data] copytool_in thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:29,440 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 05:23:11] 2026-04-10 04:22:56,040 | INFO     | PID=8324 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-10 05:23:11] 2026-04-10 04:22:56,040 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 05:23:11] 2026-04-10 04:22:56,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 05:23:11] 2026-04-10 04:22:56,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 05:23:11] 2026-04-10 04:23:04,745 | INFO     | [monitor] cgroup control has ended
[2026-04-10 05:23:11] 2026-04-10 04:23:05,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701200389952)>', '<ExcThread(monitor, started 140700620408576)>']
[2026-04-10 05:23:11] 2026-04-10 04:23:06,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 05:23:11] 2026-04-10 04:23:06,093 | INFO     | [monitor] control thread has ended
[2026-04-10 05:23:11] 2026-04-10 04:23:11,001 | INFO     | all workflow threads have been joined
[2026-04-10 05:23:11] 2026-04-10 04:23:11,001 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 05:23:11] 2026-04-10 04:23:11,002 | INFO     | traces error code: 0
[2026-04-10 05:23:11] 2026-04-10 04:23:11,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 05:23:11] 2026-04-10 04:23:11,121 [wrapper] ==== pilot stdout END ====
[2026-04-10 05:23:11] 2026-04-10 04:23:11,124 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 05:23:11] 2026-04-10 04:23:11,127 [wrapper] pilotpid: 8324
[2026-04-10 05:23:11] 2026-04-10 04:23:11,129 [wrapper] Pilot exit status: 0
[2026-04-10 05:23:11] 2026-04-10 04:23:11,152 [wrapper] pandaids: 7083286167
[2026-04-10 05:23:11] 2026-04-10 04:23:11,173 [wrapper] cleanup supervisor_pilot 17790 8325
[2026-04-10 05:23:11] 2026-04-10 04:23:11,175 [wrapper] Test setup, not cleaning
[2026-04-10 05:23:11] 2026-04-10 04:23:11,177 [wrapper] apfmon messages muted
[2026-04-10 05:23:11] 2026-04-10 04:23:11,179 [wrapper] ==== wrapper stdout END ====
[2026-04-10 05:23:11] 2026-04-10 04:23:11,180 [wrapper] ==== wrapper stderr END ====
[2026-04-10 05:23:11]  *** Error codes and diagnostics ***
[2026-04-10 05:23:11]     "exeErrorCode": 0,
[2026-04-10 05:23:11]     "pilotErrorCode": 0,
[2026-04-10 05:23:11]  *** Listing of results directory ***
[2026-04-10 05:23:11] total 413936
[2026-04-10 05:23:11] -rwx------ 1 m m     36322 Apr  9 23:42 runpilot2-wrapper.sh
[2026-04-10 05:23:11] -rw-r--r-- 1 m m      5094 Apr 10 01:06 queuedata.json
[2026-04-10 05:23:11] -rw-r--r-- 1 m m    644190 Apr 10 01:06 pilot3.tar.gz
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m       100 Apr 10 02:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 05:23:11] -rwxr-xr-x 1 m m      7986 Apr 10 02:35 run_atlas
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m       105 Apr 10 02:35 job.xml
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m      5950 Apr 10 02:35 init_data.xml
[2026-04-10 05:23:11] -rw-r--r-- 2 m m 224345211 Apr 10 02:35 EVNT.49263189._000518.pool.root.1
[2026-04-10 05:23:11] -rw-r--r-- 2 m m     15665 Apr 10 02:35 start_atlas.sh
[2026-04-10 05:23:11] drwxrwx--x 2 m m      4096 Apr 10 02:35 shared
[2026-04-10 05:23:11] -rw-r--r-- 2 m m    656933 Apr 10 02:35 input.tar.gz
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m         0 Apr 10 02:35 boinc_lockfile
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m      2577 Apr 10 02:36 pandaJob.out
[2026-04-10 05:23:11] -rw------- 1 m m    997892 Apr 10 02:36 agis_schedconf.cvmfs.json
[2026-04-10 05:23:11] -rw------- 1 m m   1511579 Apr 10 02:36 agis_ddmendpoints.agis.ALL.json
[2026-04-10 05:23:11] -rw------- 1 m m       424 Apr 10 02:36 workernode_map.json
[2026-04-10 05:23:11] drwx------ 5 m m      4096 Apr 10 02:36 pilot3
[2026-04-10 05:23:11] -rw------- 1 m m 193056317 Apr 10 05:21 HITS.49263191._033824.pool.root.1
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m       487 Apr 10 05:21 boinc_task_state.xml
[2026-04-10 05:23:11] -rw------- 1 m m      1028 Apr 10 05:22 memory_monitor_summary.json
[2026-04-10 05:23:11] -rw------- 1 m m    282694 Apr 10 05:22 log.49263191._033824.job.log.tgz.1
[2026-04-10 05:23:11] -rw------- 1 m m      6355 Apr 10 05:22 heartbeat_new.json
[2026-04-10 05:23:11] -rw------- 1 m m      6246 Apr 10 05:22 heartbeat.json
[2026-04-10 05:23:11] -rw------- 1 m m        95 Apr 10 05:22 pilot_heartbeat.json
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m      8192 Apr 10 05:22 boinc_mmap_file
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m        28 Apr 10 05:22 wrapper_checkpoint.txt
[2026-04-10 05:23:11] -rw------- 1 m m      5348 Apr 10 05:23 pilotlog.txt
[2026-04-10 05:23:11] -rw------- 1 m m    923083 Apr 10 05:23 log.49263191._033824.job.log.1
[2026-04-10 05:23:11] -rw------- 1 m m       357 Apr 10 05:23 output.list
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m       410 Apr 10 05:23 runtime_log
[2026-04-10 05:23:11] -rw------- 1 m m   1218560 Apr 10 05:23 result.tar.gz
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m      8511 Apr 10 05:23 runtime_log.err
[2026-04-10 05:23:11] -rw------- 1 m m       645 Apr 10 05:23 2b6e9d848cf4.diag
[2026-04-10 05:23:11] -rw-rw-r-- 1 m m     21041 Apr 10 05:23 stderr.txt
[2026-04-10 05:23:11] HITS file was successfully produced:
[2026-04-10 05:23:11] -rw------- 1 m m 193056317 Apr 10 05:21 shared/HITS.pool.root.1
[2026-04-10 05:23:11]  *** Contents of shared directory: ***
[2026-04-10 05:23:11] total 409480
[2026-04-10 05:23:11] -rw-r--r-- 2 m m 224345211 Apr 10 02:35 ATLAS.root_0
[2026-04-10 05:23:11] -rw-r--r-- 2 m m     15665 Apr 10 02:35 start_atlas.sh
[2026-04-10 05:23:11] -rw-r--r-- 2 m m    656933 Apr 10 02:35 input.tar.gz
[2026-04-10 05:23:11] -rw------- 1 m m 193056317 Apr 10 05:21 HITS.pool.root.1
[2026-04-10 05:23:11] -rw------- 1 m m   1218560 Apr 10 05:23 result.tar.gz
05:23:13 (4043): run_atlas exited; CPU time 37774.045689
05:23:13 (4043): called boinc_finish(0)

</stderr_txt>
]]>

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