Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:16:17 (3106048): wrapper (7.7.26015): starting
05:16:17 (3106048): wrapper: running run_atlas (--nthreads 4)
[2026-04-10 05:16:17] Arguments: --nthreads 4
[2026-04-10 05:16:17] Threads: 4
[2026-04-10 05:16:17] Checking for CVMFS
[2026-04-10 05:16:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 05:16:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 05:16:17] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 05:16:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 05:16:18] 2.9.2.0 3030651 388 65980 158283 3 1 36740387 36864001 0 130560 0 274302 99.979 22099 17778 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-10 05:16:18] CVMFS is ok
[2026-04-10 05:16:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 05:16:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 05:16:18] Further information can be found at the LHC@home message board.
[2026-04-10 05:16:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 05:16:18] Checking for apptainer binary...
[2026-04-10 05:16:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 05:16:18] Running /usr/bin/apptainer --version
[2026-04-10 05:16:18] apptainer version 1.4.1-1.1
[2026-04-10 05:16:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 05:16:18] thA317
[2026-04-10 05:16:18] apptainer works
[2026-04-10 05:16:18] Set ATHENA_PROC_NUMBER=4
[2026-04-10 05:16:18] Set ATHENA_CORE_NUMBER=4
[2026-04-10 05:16:18] Starting ATLAS job with PandaID=7082890527
[2026-04-10 05:16:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 06:33:42]  *** The last 200 lines of the pilot log: ***
[2026-04-10 06:33:42] 2026-04-10 04:32:40,801 | INFO     | overall cleanup function is called
[2026-04-10 06:33:42] 2026-04-10 04:32:41,808 | INFO     | --- collectZombieJob: --- 10, [3114682]
[2026-04-10 06:33:42] 2026-04-10 04:32:41,808 | INFO     | zombie collector waiting for pid 3114682
[2026-04-10 06:33:42] 2026-04-10 04:32:41,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 06:33:42] 2026-04-10 04:32:41,810 | INFO     | collected zombie processes
[2026-04-10 06:33:42] 2026-04-10 04:32:41,810 | INFO     | will attempt to kill all subprocesses of pid=3114682
[2026-04-10 06:33:42] 2026-04-10 04:32:41,865 | INFO     | process IDs to be killed: [3114682] (in reverse order)
[2026-04-10 06:33:42] 2026-04-10 04:32:41,905 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 06:33:42] 2026-04-10 04:32:41,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 06:33:42] 2026-04-10 04:32:41,908 | INFO     | did not find any defunct processes belonging to 3114682
[2026-04-10 06:33:42] 2026-04-10 04:32:41,909 | INFO     | did not find any defunct processes belonging to 3114682
[2026-04-10 06:33:42] 2026-04-10 04:32:41,909 | INFO     | Ready for new job
[2026-04-10 06:33:42] 2026-04-10 04:32:41,910 | INFO     | **************************************
[2026-04-10 06:33:42] 2026-04-10 04:32:41,910 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 06:33:42] 2026-04-10 04:32:41,910 | INFO     | **************************************
[2026-04-10 06:33:42] 2026-04-10 04:32:41,910 | INFO     | 
[2026-04-10 06:33:42] 2026-04-10 04:32:41,911 | INFO     | architecture information:
[2026-04-10 06:33:42] 2026-04-10 04:32:41,911 | INFO     | executing command: cat /etc/os-release
[2026-04-10 06:33:42] 2026-04-10 04:32:41,927 | INFO     | cat /etc/os-release:
[2026-04-10 06:33:42] NAME="CentOS Linux"
[2026-04-10 06:33:42] VERSION="7 (Core)"
[2026-04-10 06:33:42] ID="centos"
[2026-04-10 06:33:42] ID_LIKE="rhel fedora"
[2026-04-10 06:33:42] VERSION_ID="7"
[2026-04-10 06:33:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 06:33:42] ANSI_COLOR="0;31"
[2026-04-10 06:33:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 06:33:42] HOME_URL="https://www.centos.org/"
[2026-04-10 06:33:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 06:33:42] 
[2026-04-10 06:33:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 06:33:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 06:33:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 06:33:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 06:33:42] 
[2026-04-10 06:33:42] 2026-04-10 04:32:41,927 | INFO     | **************************************
[2026-04-10 06:33:42] 2026-04-10 04:32:42,430 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-10 06:33:42] 2026-04-10 04:32:42,450 | INFO     | sufficient remaining disk space (222987026432 B)
[2026-04-10 06:33:42] 2026-04-10 04:32:42,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 06:33:42] 2026-04-10 04:32:42,450 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 06:33:42] 2026-04-10 04:32:42,450 | INFO     | update_server=False
[2026-04-10 06:33:42] 2026-04-10 04:32:42,450 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 06:33:42] 2026-04-10 04:32:42,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 06:33:42] 2026-04-10 04:32:42,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 06:33:42] 2026-04-10 04:32:42,451 | INFO     | aborting loop
[2026-04-10 06:33:42] 2026-04-10 04:32:42,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 06:33:42] 2026-04-10 04:32:43,324 | INFO     | all job control threads have been joined
[2026-04-10 06:33:42] 2026-04-10 04:32:43,366 | INFO     | all data control threads have been joined
[2026-04-10 06:33:42] 2026-04-10 04:32:43,456 | INFO     | [job] queue monitor thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:43,456 | INFO     | [job] retrieve thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:43,457 | INFO     | [job] job monitor thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:43,647 | INFO     | [payload] validate_post thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:43,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 06:33:42] 2026-04-10 04:32:43,732 | INFO     | all payload control threads have been joined
[2026-04-10 06:33:42] 2026-04-10 04:32:43,966 | INFO     | [job] validate thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,028 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,090 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,240 | INFO     | [data] copytool_in thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,330 | INFO     | [job] control thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,372 | INFO     | [data] control thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,530 | INFO     | [payload] failed_post thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,737 | INFO     | [payload] control thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:44,911 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:45,540 | INFO     | job.realtimelogging is not enabled
[2026-04-10 06:33:42] 2026-04-10 04:32:45,709 | INFO     | [data] copytool_out thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:46,456 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:32:46,546 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 06:33:42] 2026-04-10 04:33:13,175 | INFO     | PID=3110165 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 06:33:42] 2026-04-10 04:33:13,175 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 06:33:42] 2026-04-10 04:33:13,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 06:33:42] 2026-04-10 04:33:13,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 06:33:42] 2026-04-10 04:33:36,376 | INFO     | [monitor] cgroup control has ended
[2026-04-10 06:33:42] 2026-04-10 04:33:37,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139707132118848)>', '<ExcThread(monitor, started 139706268370688)>']
[2026-04-10 06:33:42] 2026-04-10 04:33:38,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 06:33:42] 2026-04-10 04:33:38,304 | INFO     | [monitor] control thread has ended
[2026-04-10 06:33:42] 2026-04-10 04:33:42,395 | INFO     | all workflow threads have been joined
[2026-04-10 06:33:42] 2026-04-10 04:33:42,395 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 06:33:42] 2026-04-10 04:33:42,396 | INFO     | traces error code: 0
[2026-04-10 06:33:42] 2026-04-10 04:33:42,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 06:33:42] 2026-04-10 04:33:42,480 [wrapper] ==== pilot stdout END ====
[2026-04-10 06:33:42] 2026-04-10 04:33:42,484 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 06:33:42] 2026-04-10 04:33:42,488 [wrapper] pilotpid: 3110165
[2026-04-10 06:33:42] 2026-04-10 04:33:42,493 [wrapper] Pilot exit status: 0
[2026-04-10 06:33:42] 2026-04-10 04:33:42,505 [wrapper] pandaids: 7082890527
[2026-04-10 06:33:42] 2026-04-10 04:33:42,531 [wrapper] cleanup supervisor_pilot 3120480 3110166
[2026-04-10 06:33:42] 2026-04-10 04:33:42,536 [wrapper] Test setup, not cleaning
[2026-04-10 06:33:42] 2026-04-10 04:33:42,539 [wrapper] apfmon messages muted
[2026-04-10 06:33:42] 2026-04-10 04:33:42,543 [wrapper] ==== wrapper stdout END ====
[2026-04-10 06:33:42] 2026-04-10 04:33:42,547 [wrapper] ==== wrapper stderr END ====
[2026-04-10 06:33:42]  *** Error codes and diagnostics ***
[2026-04-10 06:33:42]     "exeErrorCode": 0,
[2026-04-10 06:33:42]     "pilotErrorCode": 0,
[2026-04-10 06:33:42]  *** Listing of results directory ***
[2026-04-10 06:33:42] total 412868
[2026-04-10 06:33:42] -rwx------ 1 boinc boinc     36322 Apr  9 23:45 runpilot2-wrapper.sh
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc    644190 Apr  9 23:52 pilot3.tar.gz
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc      5094 Apr  9 23:57 queuedata.json
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc       100 Apr 10 05:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 06:33:42] -rwxr-xr-x 1 boinc boinc      7986 Apr 10 05:16 run_atlas
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc       105 Apr 10 05:16 job.xml
[2026-04-10 06:33:42] -rw-r--r-- 2 boinc boinc 222974848 Apr 10 05:16 EVNT.49263206._000474.pool.root.1
[2026-04-10 06:33:42] -rw-r--r-- 2 boinc boinc    656932 Apr 10 05:16 input.tar.gz
[2026-04-10 06:33:42] -rw-r--r-- 2 boinc boinc     15665 Apr 10 05:16 start_atlas.sh
[2026-04-10 06:33:42] drwxrwx--x 2 boinc boinc      4096 Apr 10 05:16 shared
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc         0 Apr 10 05:16 boinc_setup_complete
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc      6292 Apr 10 05:16 init_data.xml
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc         0 Apr 10 05:16 boinc_lockfile
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc      2575 Apr 10 05:16 pandaJob.out
[2026-04-10 06:33:42] -rw------- 1 boinc boinc    997892 Apr 10 05:16 agis_schedconf.cvmfs.json
[2026-04-10 06:33:42] -rw------- 1 boinc boinc   1511579 Apr 10 05:16 agis_ddmendpoints.agis.ALL.json
[2026-04-10 06:33:42] -rw------- 1 boinc boinc       420 Apr 10 05:16 workernode_map.json
[2026-04-10 06:33:42] drwx------ 5 boinc boinc      4096 Apr 10 05:16 pilot3
[2026-04-10 06:33:42] -rw------- 1 boinc boinc 194360492 Apr 10 06:32 HITS.49263208._025091.pool.root.1
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc       487 Apr 10 06:32 boinc_task_state.xml
[2026-04-10 06:33:42] -rw------- 1 boinc boinc      1020 Apr 10 06:32 memory_monitor_summary.json
[2026-04-10 06:33:42] -rw------- 1 boinc boinc    246159 Apr 10 06:32 log.49263208._025091.job.log.tgz.1
[2026-04-10 06:33:42] -rw------- 1 boinc boinc      6324 Apr 10 06:32 heartbeat_new.json
[2026-04-10 06:33:42] -rw------- 1 boinc boinc      6215 Apr 10 06:32 heartbeat.json
[2026-04-10 06:33:42] -rw------- 1 boinc boinc        95 Apr 10 06:33 pilot_heartbeat.json
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc      8192 Apr 10 06:33 boinc_mmap_file
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc        27 Apr 10 06:33 wrapper_checkpoint.txt
[2026-04-10 06:33:42] -rw------- 1 boinc boinc      4819 Apr 10 06:33 pilotlog.txt
[2026-04-10 06:33:42] -rw------- 1 boinc boinc    450452 Apr 10 06:33 log.49263208._025091.job.log.1
[2026-04-10 06:33:42] -rw------- 1 boinc boinc       357 Apr 10 06:33 output.list
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc       410 Apr 10 06:33 runtime_log
[2026-04-10 06:33:42] -rw------- 1 boinc boinc    716800 Apr 10 06:33 result.tar.gz
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc      8518 Apr 10 06:33 runtime_log.err
[2026-04-10 06:33:42] -rw------- 1 boinc boinc       657 Apr 10 06:33 1e122e3d51dc.diag
[2026-04-10 06:33:42] -rw-r--r-- 1 boinc boinc     10578 Apr 10 06:33 stderr.txt
[2026-04-10 06:33:42] HITS file was successfully produced:
[2026-04-10 06:33:42] -rw------- 1 boinc boinc 194360492 Apr 10 06:32 shared/HITS.pool.root.1
[2026-04-10 06:33:42]  *** Contents of shared directory: ***
[2026-04-10 06:33:42] total 408924
[2026-04-10 06:33:42] -rw-r--r-- 2 boinc boinc 222974848 Apr 10 05:16 ATLAS.root_0
[2026-04-10 06:33:42] -rw-r--r-- 2 boinc boinc    656932 Apr 10 05:16 input.tar.gz
[2026-04-10 06:33:42] -rw-r--r-- 2 boinc boinc     15665 Apr 10 05:16 start_atlas.sh
[2026-04-10 06:33:42] -rw------- 1 boinc boinc 194360492 Apr 10 06:32 HITS.pool.root.1
[2026-04-10 06:33:42] -rw------- 1 boinc boinc    716800 Apr 10 06:33 result.tar.gz
06:33:44 (3106048): run_atlas exited; CPU time 16695.319160
06:33:44 (3106048): called boinc_finish(0)

</stderr_txt>
]]>

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