Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:48:44 (684944): wrapper (7.7.26015): starting
00:48:44 (684944): wrapper: running run_atlas (--nthreads 4)
[2026-04-10 00:48:44] Arguments: --nthreads 4
[2026-04-10 00:48:44] Threads: 4
[2026-04-10 00:48:44] Checking for CVMFS
[2026-04-10 00:48:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 00:48:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 00:48:45] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 00:48:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 00:48:45] 2.9.2.0 685139 0 29996 158277 4 1 33523440 36864000 0 130560 0 0 0.000 1337 14692 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-10 00:48:45] CVMFS is ok
[2026-04-10 00:48:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 00:48:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 00:48:45] Further information can be found at the LHC@home message board.
[2026-04-10 00:48:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 00:48:45] Checking for apptainer binary...
[2026-04-10 00:48:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 00:48:45] Running /usr/bin/apptainer --version
[2026-04-10 00:48:45] apptainer version 1.4.1-1.1
[2026-04-10 00:48:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 00:48:45] thA332a
[2026-04-10 00:48:45] apptainer works
[2026-04-10 00:48:45] Set ATHENA_PROC_NUMBER=4
[2026-04-10 00:48:45] Set ATHENA_CORE_NUMBER=4
[2026-04-10 00:48:45] Starting ATLAS job with PandaID=7083276854
[2026-04-10 00:48:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 02:02:10]  *** The last 200 lines of the pilot log: ***
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | job 7083276854 has completed (purged errors)
[2026-04-10 02:02:10] 2026-04-10 00:01:35,294 | INFO     | overall cleanup function is called
[2026-04-10 02:02:10] 2026-04-10 00:01:36,301 | INFO     | --- collectZombieJob: --- 10, [693813]
[2026-04-10 02:02:10] 2026-04-10 00:01:36,301 | INFO     | zombie collector waiting for pid 693813
[2026-04-10 02:02:10] 2026-04-10 00:01:36,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 02:02:10] 2026-04-10 00:01:36,302 | INFO     | collected zombie processes
[2026-04-10 02:02:10] 2026-04-10 00:01:36,302 | INFO     | will attempt to kill all subprocesses of pid=693813
[2026-04-10 02:02:10] 2026-04-10 00:01:36,343 | INFO     | process IDs to be killed: [693813] (in reverse order)
[2026-04-10 02:02:10] 2026-04-10 00:01:36,376 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 02:02:10] 2026-04-10 00:01:36,376 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 02:02:10] 2026-04-10 00:01:36,378 | INFO     | did not find any defunct processes belonging to 693813
[2026-04-10 02:02:10] 2026-04-10 00:01:36,379 | INFO     | did not find any defunct processes belonging to 693813
[2026-04-10 02:02:10] 2026-04-10 00:01:36,379 | INFO     | Ready for new job
[2026-04-10 02:02:10] 2026-04-10 00:01:36,380 | INFO     | **************************************
[2026-04-10 02:02:10] 2026-04-10 00:01:36,380 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 02:02:10] 2026-04-10 00:01:36,380 | INFO     | **************************************
[2026-04-10 02:02:10] 2026-04-10 00:01:36,380 | INFO     | 
[2026-04-10 02:02:10] 2026-04-10 00:01:36,380 | INFO     | architecture information:
[2026-04-10 02:02:10] 2026-04-10 00:01:36,380 | INFO     | executing command: cat /etc/os-release
[2026-04-10 02:02:10] 2026-04-10 00:01:36,395 | INFO     | cat /etc/os-release:
[2026-04-10 02:02:10] NAME="CentOS Linux"
[2026-04-10 02:02:10] VERSION="7 (Core)"
[2026-04-10 02:02:10] ID="centos"
[2026-04-10 02:02:10] ID_LIKE="rhel fedora"
[2026-04-10 02:02:10] VERSION_ID="7"
[2026-04-10 02:02:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 02:02:10] ANSI_COLOR="0;31"
[2026-04-10 02:02:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 02:02:10] HOME_URL="https://www.centos.org/"
[2026-04-10 02:02:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 02:02:10] 
[2026-04-10 02:02:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 02:02:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 02:02:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 02:02:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 02:02:10] 
[2026-04-10 02:02:10] 2026-04-10 00:01:36,395 | INFO     | **************************************
[2026-04-10 02:02:10] 2026-04-10 00:01:36,898 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-10 02:02:10] 2026-04-10 00:01:36,916 | INFO     | sufficient remaining disk space (327672659968 B)
[2026-04-10 02:02:10] 2026-04-10 00:01:36,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 02:02:10] 2026-04-10 00:01:36,916 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 02:02:10] 2026-04-10 00:01:36,916 | INFO     | update_server=False
[2026-04-10 02:02:10] 2026-04-10 00:01:36,916 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 02:02:10] 2026-04-10 00:01:36,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 02:02:10] 2026-04-10 00:01:36,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 02:02:10] 2026-04-10 00:01:36,917 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-10 02:02:10] 2026-04-10 00:01:36,917 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 02:02:10] 2026-04-10 00:01:36,917 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 02:02:10] 2026-04-10 00:01:36,917 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 02:02:10] 2026-04-10 00:01:37,080 | INFO     | all data control threads have been joined
[2026-04-10 02:02:10] 2026-04-10 00:01:37,922 | INFO     | [job] retrieve thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:37,922 | INFO     | [job] queue monitor thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:37,962 | INFO     | [data] copytool_in thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:38,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 02:02:10] 2026-04-10 00:01:38,085 | INFO     | [data] control thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:38,225 | INFO     | all payload control threads have been joined
[2026-04-10 02:02:10] 2026-04-10 00:01:38,266 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:38,357 | INFO     | [payload] failed_post thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:38,442 | INFO     | all job control threads have been joined
[2026-04-10 02:02:10] 2026-04-10 00:01:38,860 | INFO     | [payload] validate_post thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:38,978 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:39,117 | INFO     | [job] validate thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:39,222 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:39,231 | INFO     | [payload] control thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:39,281 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:39,448 | INFO     | [job] control thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:40,038 | INFO     | [data] copytool_out thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:40,924 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:01:41,229 | WARNING  | process 693813 can no longer be monitored (due to stat problems) - aborting
[2026-04-10 02:02:10] 2026-04-10 00:01:41,259 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 02:02:10] 2026-04-10 00:01:41,297 | INFO     | number of running child processes to parent process 693813: 1
[2026-04-10 02:02:10] 2026-04-10 00:01:41,297 | INFO     | maximum number of monitored processes: 6
[2026-04-10 02:02:10] 2026-04-10 00:01:41,297 | INFO     | aborting job monitoring since job object (job id=7083276854) has expired
[2026-04-10 02:02:10] 2026-04-10 00:01:41,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 02:02:10] 2026-04-10 00:01:41,297 | INFO     | will abort loop
[2026-04-10 02:02:10] 2026-04-10 00:01:42,302 | INFO     | [job] job monitor thread has finished
[2026-04-10 02:02:10] 2026-04-10 00:02:03,222 | INFO     | [monitor] cgroup control has ended
[2026-04-10 02:02:10] 2026-04-10 00:02:04,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976706352960)>', '<ExcThread(monitor, started 139976004073216)>']
[2026-04-10 02:02:10] 2026-04-10 00:02:05,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 02:02:10] 2026-04-10 00:02:05,065 | INFO     | [monitor] control thread has ended
[2026-04-10 02:02:10] 2026-04-10 00:02:09,882 | INFO     | all workflow threads have been joined
[2026-04-10 02:02:10] 2026-04-10 00:02:09,883 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 02:02:10] 2026-04-10 00:02:09,883 | INFO     | traces error code: 0
[2026-04-10 02:02:10] 2026-04-10 00:02:09,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 02:02:10] 2026-04-10 00:02:09,961 [wrapper] ==== pilot stdout END ====
[2026-04-10 02:02:10] 2026-04-10 00:02:09,965 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 02:02:10] 2026-04-10 00:02:09,969 [wrapper] pilotpid: 689287
[2026-04-10 02:02:10] 2026-04-10 00:02:09,973 [wrapper] Pilot exit status: 0
[2026-04-10 02:02:10] 2026-04-10 00:02:09,984 [wrapper] pandaids: 7083276854
[2026-04-10 02:02:10] 2026-04-10 00:02:10,005 [wrapper] cleanup supervisor_pilot  698829 689288
[2026-04-10 02:02:10] 2026-04-10 00:02:10,009 [wrapper] Test setup, not cleaning
[2026-04-10 02:02:10] 2026-04-10 00:02:10,013 [wrapper] apfmon messages muted
[2026-04-10 02:02:10] 2026-04-10 00:02:10,016 [wrapper] ==== wrapper stdout END ====
[2026-04-10 02:02:10] 2026-04-10 00:02:10,020 [wrapper] ==== wrapper stderr END ====
[2026-04-10 02:02:10]  *** Error codes and diagnostics ***
[2026-04-10 02:02:10]     "exeErrorCode": 0,
[2026-04-10 02:02:10]     "pilotErrorCode": 0,
[2026-04-10 02:02:10]  *** Listing of results directory ***
[2026-04-10 02:02:10] total 417096
[2026-04-10 02:02:10] -rwx------ 1 boinc boinc     36322 Apr  9 22:59 runpilot2-wrapper.sh
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc    644190 Apr  9 23:06 pilot3.tar.gz
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc      5094 Apr  9 23:11 queuedata.json
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc       100 Apr 10 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 02:02:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 10 00:48 run_atlas
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc       105 Apr 10 00:48 job.xml
[2026-04-10 02:02:10] -rw-r--r-- 2 boinc boinc 228663692 Apr 10 00:48 EVNT.49263206._000571.pool.root.1
[2026-04-10 02:02:10] -rw-r--r-- 2 boinc boinc    656931 Apr 10 00:48 input.tar.gz
[2026-04-10 02:02:10] -rw-r--r-- 2 boinc boinc     15665 Apr 10 00:48 start_atlas.sh
[2026-04-10 02:02:10] drwxrwx--x 2 boinc boinc      4096 Apr 10 00:48 shared
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc         0 Apr 10 00:48 boinc_setup_complete
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc      6286 Apr 10 00:48 init_data.xml
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc         0 Apr 10 00:48 boinc_lockfile
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc      2575 Apr 10 00:48 pandaJob.out
[2026-04-10 02:02:10] -rw------- 1 boinc boinc    997884 Apr 10 00:48 agis_schedconf.cvmfs.json
[2026-04-10 02:02:10] -rw------- 1 boinc boinc   1511579 Apr 10 00:48 agis_ddmendpoints.agis.ALL.json
[2026-04-10 02:02:10] -rw------- 1 boinc boinc       428 Apr 10 00:48 workernode_map.json
[2026-04-10 02:02:10] drwx------ 5 boinc boinc      4096 Apr 10 00:48 pilot3
[2026-04-10 02:02:10] -rw------- 1 boinc boinc 193014994 Apr 10 02:01 HITS.49263208._026747.pool.root.1
[2026-04-10 02:02:10] -rw------- 1 boinc boinc        95 Apr 10 02:01 pilot_heartbeat.json
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc       487 Apr 10 02:01 boinc_task_state.xml
[2026-04-10 02:02:10] -rw------- 1 boinc boinc      1014 Apr 10 02:01 memory_monitor_summary.json
[2026-04-10 02:02:10] -rw------- 1 boinc boinc    254313 Apr 10 02:01 log.49263208._026747.job.log.tgz.1
[2026-04-10 02:02:10] -rw------- 1 boinc boinc      6334 Apr 10 02:01 heartbeat_new.json
[2026-04-10 02:02:10] -rw------- 1 boinc boinc      6225 Apr 10 02:01 heartbeat.json
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc      8192 Apr 10 02:02 boinc_mmap_file
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc        27 Apr 10 02:02 wrapper_checkpoint.txt
[2026-04-10 02:02:10] -rw------- 1 boinc boinc      5073 Apr 10 02:02 pilotlog.txt
[2026-04-10 02:02:10] -rw------- 1 boinc boinc    432857 Apr 10 02:02 log.49263208._026747.job.log.1
[2026-04-10 02:02:10] -rw------- 1 boinc boinc       357 Apr 10 02:02 output.list
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc       410 Apr 10 02:02 runtime_log
[2026-04-10 02:02:10] -rw------- 1 boinc boinc    706560 Apr 10 02:02 result.tar.gz
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc      8523 Apr 10 02:02 runtime_log.err
[2026-04-10 02:02:10] -rw------- 1 boinc boinc       658 Apr 10 02:02 133a6b25ea6f.diag
[2026-04-10 02:02:10] -rw-r--r-- 1 boinc boinc     12140 Apr 10 02:02 stderr.txt
[2026-04-10 02:02:10] HITS file was successfully produced:
[2026-04-10 02:02:10] -rw------- 1 boinc boinc 193014994 Apr 10 02:01 shared/HITS.pool.root.1
[2026-04-10 02:02:10]  *** Contents of shared directory: ***
[2026-04-10 02:02:10] total 413160
[2026-04-10 02:02:10] -rw-r--r-- 2 boinc boinc 228663692 Apr 10 00:48 ATLAS.root_0
[2026-04-10 02:02:10] -rw-r--r-- 2 boinc boinc    656931 Apr 10 00:48 input.tar.gz
[2026-04-10 02:02:10] -rw-r--r-- 2 boinc boinc     15665 Apr 10 00:48 start_atlas.sh
[2026-04-10 02:02:10] -rw------- 1 boinc boinc 193014994 Apr 10 02:01 HITS.pool.root.1
[2026-04-10 02:02:10] -rw------- 1 boinc boinc    706560 Apr 10 02:02 result.tar.gz
02:02:11 (684944): run_atlas exited; CPU time 16056.083057
02:02:11 (684944): called boinc_finish(0)

</stderr_txt>
]]>

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