Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:58:41 (1178785): wrapper (7.7.26015): starting
05:58:41 (1178785): wrapper: running run_atlas (--nthreads 3)
[2026-04-10 05:58:41] Arguments: --nthreads 3
[2026-04-10 05:58:41] Threads: 3
[2026-04-10 05:58:41] Checking for CVMFS
[2026-04-10 05:58:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 05:58:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 05:58:42] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 05:58:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 05:58:42] 2.9.2.0 1148888 304 55448 158284 0 49 32665542 36864000 0 130560 0 112104 99.976 13480 21430 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-10 05:58:42] CVMFS is ok
[2026-04-10 05:58:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 05:58:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 05:58:42] Further information can be found at the LHC@home message board.
[2026-04-10 05:58:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 05:58:42] Checking for apptainer binary...
[2026-04-10 05:58:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 05:58:42] Running /usr/bin/apptainer --version
[2026-04-10 05:58:42] apptainer version 1.4.1-1.1
[2026-04-10 05:58:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 05:58:42] belleA253
[2026-04-10 05:58:42] apptainer works
[2026-04-10 05:58:42] Set ATHENA_PROC_NUMBER=3
[2026-04-10 05:58:42] Set ATHENA_CORE_NUMBER=3
[2026-04-10 05:58:42] Starting ATLAS job with PandaID=7082844199
[2026-04-10 05:58:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 07:26:10]  *** The last 200 lines of the pilot log: ***
[2026-04-10 07:26:10] 2026-04-10 05:25:39,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 07:26:10] 2026-04-10 05:25:39,154 | INFO     | collected zombie processes
[2026-04-10 07:26:10] 2026-04-10 05:25:39,154 | INFO     | will attempt to kill all subprocesses of pid=1187267
[2026-04-10 07:26:10] 2026-04-10 05:25:39,195 | INFO     | process IDs to be killed: [1187267] (in reverse order)
[2026-04-10 07:26:10] 2026-04-10 05:25:39,220 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 07:26:10] 2026-04-10 05:25:39,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 07:26:10] 2026-04-10 05:25:39,222 | INFO     | did not find any defunct processes belonging to 1187267
[2026-04-10 07:26:10] 2026-04-10 05:25:39,223 | INFO     | did not find any defunct processes belonging to 1187267
[2026-04-10 07:26:10] 2026-04-10 05:25:39,223 | INFO     | Ready for new job
[2026-04-10 07:26:10] 2026-04-10 05:25:39,223 | INFO     | **************************************
[2026-04-10 07:26:10] 2026-04-10 05:25:39,224 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 07:26:10] 2026-04-10 05:25:39,224 | INFO     | **************************************
[2026-04-10 07:26:10] 2026-04-10 05:25:39,224 | INFO     | 
[2026-04-10 07:26:10] 2026-04-10 05:25:39,224 | INFO     | architecture information:
[2026-04-10 07:26:10] 2026-04-10 05:25:39,224 | INFO     | executing command: cat /etc/os-release
[2026-04-10 07:26:10] 2026-04-10 05:25:39,233 | INFO     | cat /etc/os-release:
[2026-04-10 07:26:10] NAME="CentOS Linux"
[2026-04-10 07:26:10] VERSION="7 (Core)"
[2026-04-10 07:26:10] ID="centos"
[2026-04-10 07:26:10] ID_LIKE="rhel fedora"
[2026-04-10 07:26:10] VERSION_ID="7"
[2026-04-10 07:26:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 07:26:10] ANSI_COLOR="0;31"
[2026-04-10 07:26:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 07:26:10] HOME_URL="https://www.centos.org/"
[2026-04-10 07:26:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 07:26:10] 
[2026-04-10 07:26:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 07:26:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 07:26:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 07:26:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 07:26:10] 
[2026-04-10 07:26:10] 2026-04-10 05:25:39,234 | INFO     | **************************************
[2026-04-10 07:26:10] 2026-04-10 05:25:39,737 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-10 07:26:10] 2026-04-10 05:25:39,751 | INFO     | sufficient remaining disk space (372527595520 B)
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | INFO     | update_server=False
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 07:26:10] 2026-04-10 05:25:39,752 | INFO     | aborting loop
[2026-04-10 07:26:10] 2026-04-10 05:25:40,096 | INFO     | all data control threads have been joined
[2026-04-10 07:26:10] 2026-04-10 05:25:40,398 | INFO     | all job control threads have been joined
[2026-04-10 07:26:10] 2026-04-10 05:25:40,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 07:26:10] 2026-04-10 05:25:40,757 | INFO     | [job] queue monitor thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:40,758 | INFO     | [job] retrieve thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:40,758 | INFO     | [job] job monitor thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:40,899 | INFO     | [data] copytool_in thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:41,051 | INFO     | [payload] validate_post thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:41,100 | INFO     | all payload control threads have been joined
[2026-04-10 07:26:10] 2026-04-10 05:25:41,101 | INFO     | [data] control thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:41,404 | INFO     | [job] control thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:41,973 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:41,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 07:26:10] 2026-04-10 05:25:42,103 | INFO     | [payload] failed_post thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:42,106 | INFO     | [payload] control thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:42,127 | INFO     | [job] validate thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:42,231 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:42,231 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:42,535 | INFO     | [data] copytool_out thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:45,985 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:50,580 | INFO     | job.realtimelogging is not enabled
[2026-04-10 07:26:10] 2026-04-10 05:25:51,586 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 07:26:10] 2026-04-10 05:25:58,223 | INFO     | [monitor] cgroup control has ended
[2026-04-10 07:26:10] 2026-04-10 05:25:58,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543063189312)>', '<ExcThread(monitor, started 140542193166080)>']
[2026-04-10 07:26:10] 2026-04-10 05:26:03,305 | INFO     | all workflow threads have been joined
[2026-04-10 07:26:10] 2026-04-10 05:26:03,306 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 07:26:10] 2026-04-10 05:26:03,307 | INFO     | traces error code: 0
[2026-04-10 07:26:10] 2026-04-10 05:26:03,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 07:26:10] 2026-04-10 05:26:10,049 | INFO     | PID=1182835 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 07:26:10] 2026-04-10 05:26:10,049 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 07:26:10] 2026-04-10 05:26:10,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 07:26:10] 2026-04-10 05:26:10,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 07:26:10] 2026-04-10 05:26:10,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 07:26:10] 2026-04-10 05:26:10,050 | INFO     | [monitor] control thread has ended
[2026-04-10 07:26:10] 2026-04-10 05:26:10,096 [wrapper] ==== pilot stdout END ====
[2026-04-10 07:26:10] 2026-04-10 05:26:10,099 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 07:26:10] 2026-04-10 05:26:10,101 [wrapper] pilotpid: 1182835
[2026-04-10 07:26:10] 2026-04-10 05:26:10,104 [wrapper] Pilot exit status: 0
[2026-04-10 07:26:10] 2026-04-10 05:26:10,112 [wrapper] pandaids: 7082844199
[2026-04-10 07:26:10] 2026-04-10 05:26:10,128 [wrapper] cleanup supervisor_pilot 1193569 1182836
[2026-04-10 07:26:10] 2026-04-10 05:26:10,130 [wrapper] Test setup, not cleaning
[2026-04-10 07:26:10] 2026-04-10 05:26:10,133 [wrapper] apfmon messages muted
[2026-04-10 07:26:10] 2026-04-10 05:26:10,135 [wrapper] ==== wrapper stdout END ====
[2026-04-10 07:26:10] 2026-04-10 05:26:10,138 [wrapper] ==== wrapper stderr END ====
[2026-04-10 07:26:10]  *** Error codes and diagnostics ***
[2026-04-10 07:26:10]     "exeErrorCode": 0,
[2026-04-10 07:26:10]     "pilotErrorCode": 0,
[2026-04-10 07:26:10]  *** Listing of results directory ***
[2026-04-10 07:26:10] total 418444
[2026-04-10 07:26:10] -rwx------ 1 boinc boinc     36322 Apr  9 23:45 runpilot2-wrapper.sh
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc    644190 Apr  9 23:52 pilot3.tar.gz
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc      5094 Apr  9 23:57 queuedata.json
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc       100 Apr 10 05:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 07:26:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 10 05:58 run_atlas
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc       105 Apr 10 05:58 job.xml
[2026-04-10 07:26:10] -rw-r--r-- 2 boinc boinc 224202067 Apr 10 05:58 EVNT.49263206._000462.pool.root.1
[2026-04-10 07:26:10] -rw-r--r-- 2 boinc boinc    656927 Apr 10 05:58 input.tar.gz
[2026-04-10 07:26:10] -rw-r--r-- 2 boinc boinc     15665 Apr 10 05:58 start_atlas.sh
[2026-04-10 07:26:10] drwxrwx--x 2 boinc boinc      4096 Apr 10 05:58 shared
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc         0 Apr 10 05:58 boinc_setup_complete
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc      6363 Apr 10 05:58 init_data.xml
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc         0 Apr 10 05:58 boinc_lockfile
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc      2572 Apr 10 05:58 pandaJob.out
[2026-04-10 07:26:10] -rw------- 1 boinc boinc    997884 Apr 10 05:58 agis_schedconf.cvmfs.json
[2026-04-10 07:26:10] -rw------- 1 boinc boinc   1511579 Apr 10 05:58 agis_ddmendpoints.agis.ALL.json
[2026-04-10 07:26:10] -rw------- 1 boinc boinc       425 Apr 10 05:58 workernode_map.json
[2026-04-10 07:26:10] drwx------ 5 boinc boinc      4096 Apr 10 05:58 pilot3
[2026-04-10 07:26:10] -rw------- 1 boinc boinc 198787792 Apr 10 07:25 HITS.49263208._025001.pool.root.1
[2026-04-10 07:26:10] -rw------- 1 boinc boinc        95 Apr 10 07:25 pilot_heartbeat.json
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc       487 Apr 10 07:25 boinc_task_state.xml
[2026-04-10 07:26:10] -rw------- 1 boinc boinc      1014 Apr 10 07:25 memory_monitor_summary.json
[2026-04-10 07:26:10] -rw------- 1 boinc boinc    216902 Apr 10 07:25 log.49263208._025001.job.log.tgz.1
[2026-04-10 07:26:10] -rw------- 1 boinc boinc      6314 Apr 10 07:25 heartbeat_new.json
[2026-04-10 07:26:10] -rw------- 1 boinc boinc      6205 Apr 10 07:25 heartbeat.json
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc      8192 Apr 10 07:25 boinc_mmap_file
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc        27 Apr 10 07:25 wrapper_checkpoint.txt
[2026-04-10 07:26:10] -rw------- 1 boinc boinc       747 Apr 10 07:26 pilotlog.txt
[2026-04-10 07:26:10] -rw------- 1 boinc boinc    508006 Apr 10 07:26 log.49263208._025001.job.log.1
[2026-04-10 07:26:10] -rw------- 1 boinc boinc       357 Apr 10 07:26 output.list
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc       410 Apr 10 07:26 runtime_log
[2026-04-10 07:26:10] -rw------- 1 boinc boinc    747520 Apr 10 07:26 result.tar.gz
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc      8533 Apr 10 07:26 runtime_log.err
[2026-04-10 07:26:10] -rw------- 1 boinc boinc       660 Apr 10 07:26 1e00603df108.diag
[2026-04-10 07:26:10] -rw-r--r-- 1 boinc boinc     10289 Apr 10 07:26 stderr.txt
[2026-04-10 07:26:10] HITS file was successfully produced:
[2026-04-10 07:26:10] -rw------- 1 boinc boinc 198787792 Apr 10 07:25 shared/HITS.pool.root.1
[2026-04-10 07:26:10]  *** Contents of shared directory: ***
[2026-04-10 07:26:10] total 414476
[2026-04-10 07:26:10] -rw-r--r-- 2 boinc boinc 224202067 Apr 10 05:58 ATLAS.root_0
[2026-04-10 07:26:10] -rw-r--r-- 2 boinc boinc    656927 Apr 10 05:58 input.tar.gz
[2026-04-10 07:26:10] -rw-r--r-- 2 boinc boinc     15665 Apr 10 05:58 start_atlas.sh
[2026-04-10 07:26:10] -rw------- 1 boinc boinc 198787792 Apr 10 07:25 HITS.pool.root.1
[2026-04-10 07:26:10] -rw------- 1 boinc boinc    747520 Apr 10 07:26 result.tar.gz
07:26:11 (1178785): run_atlas exited; CPU time 14596.038901
07:26:11 (1178785): called boinc_finish(0)

</stderr_txt>
]]>

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