Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:52:13 (723092): wrapper (7.7.26015): starting
01:52:13 (723092): wrapper: running run_atlas (--nthreads 4)
[2026-04-10 01:52:13] Arguments: --nthreads 4
[2026-04-10 01:52:13] Threads: 4
[2026-04-10 01:52:13] Checking for CVMFS
[2026-04-10 01:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 01:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 01:52:14] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 01:52:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 01:52:14] 2.9.2.0 700464 75 50860 158278 0 50 21532784 36864001 0 130560 0 54822 99.960 6698 30445 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-10 01:52:14] CVMFS is ok
[2026-04-10 01:52:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 01:52:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 01:52:14] Further information can be found at the LHC@home message board.
[2026-04-10 01:52:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 01:52:14] Checking for apptainer binary...
[2026-04-10 01:52:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 01:52:14] Running /usr/bin/apptainer --version
[2026-04-10 01:52:14] apptainer version 1.4.1-1.1
[2026-04-10 01:52:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 01:52:14] atlasA237
[2026-04-10 01:52:14] apptainer works
[2026-04-10 01:52:14] Set ATHENA_PROC_NUMBER=4
[2026-04-10 01:52:14] Set ATHENA_CORE_NUMBER=4
[2026-04-10 01:52:14] Starting ATLAS job with PandaID=7083227040
[2026-04-10 01:52:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 03:07:57]  *** The last 200 lines of the pilot log: ***
[2026-04-10 03:07:57] 2026-04-10 01:07:25,488 | INFO     | will attempt to kill all subprocesses of pid=731806
[2026-04-10 03:07:57] 2026-04-10 01:07:25,559 | INFO     | process IDs to be killed: [731806] (in reverse order)
[2026-04-10 03:07:57] 2026-04-10 01:07:25,605 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 03:07:57] 2026-04-10 01:07:25,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 03:07:57] 2026-04-10 01:07:25,608 | INFO     | did not find any defunct processes belonging to 731806
[2026-04-10 03:07:57] 2026-04-10 01:07:25,611 | INFO     | did not find any defunct processes belonging to 731806
[2026-04-10 03:07:57] 2026-04-10 01:07:25,611 | INFO     | Ready for new job
[2026-04-10 03:07:57] 2026-04-10 01:07:25,612 | INFO     | **************************************
[2026-04-10 03:07:57] 2026-04-10 01:07:25,612 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 03:07:57] 2026-04-10 01:07:25,612 | INFO     | **************************************
[2026-04-10 03:07:57] 2026-04-10 01:07:25,612 | INFO     | 
[2026-04-10 03:07:57] 2026-04-10 01:07:25,613 | INFO     | architecture information:
[2026-04-10 03:07:57] 2026-04-10 01:07:25,613 | INFO     | executing command: cat /etc/os-release
[2026-04-10 03:07:57] 2026-04-10 01:07:25,627 | INFO     | cat /etc/os-release:
[2026-04-10 03:07:57] NAME="CentOS Linux"
[2026-04-10 03:07:57] VERSION="7 (Core)"
[2026-04-10 03:07:57] ID="centos"
[2026-04-10 03:07:57] ID_LIKE="rhel fedora"
[2026-04-10 03:07:57] VERSION_ID="7"
[2026-04-10 03:07:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 03:07:57] ANSI_COLOR="0;31"
[2026-04-10 03:07:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 03:07:57] HOME_URL="https://www.centos.org/"
[2026-04-10 03:07:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 03:07:57] 
[2026-04-10 03:07:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 03:07:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 03:07:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 03:07:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 03:07:57] 
[2026-04-10 03:07:57] 2026-04-10 01:07:25,627 | INFO     | **************************************
[2026-04-10 03:07:57] 2026-04-10 01:07:26,130 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-10 03:07:57] 2026-04-10 01:07:26,147 | INFO     | sufficient remaining disk space (339264667648 B)
[2026-04-10 03:07:57] 2026-04-10 01:07:26,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 03:07:57] 2026-04-10 01:07:26,147 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 03:07:57] 2026-04-10 01:07:26,147 | INFO     | update_server=False
[2026-04-10 03:07:57] 2026-04-10 01:07:26,147 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 03:07:57] 2026-04-10 01:07:26,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 03:07:57] 2026-04-10 01:07:26,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 03:07:57] 2026-04-10 01:07:26,148 | INFO     | aborting loop
[2026-04-10 03:07:57] 2026-04-10 01:07:26,185 | INFO     | all payload control threads have been joined
[2026-04-10 03:07:57] 2026-04-10 01:07:26,330 | INFO     | all job control threads have been joined
[2026-04-10 03:07:57] 2026-04-10 01:07:26,343 | INFO     | all data control threads have been joined
[2026-04-10 03:07:57] 2026-04-10 01:07:26,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 03:07:57] 2026-04-10 01:07:27,153 | INFO     | [job] retrieve thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,153 | INFO     | [job] queue monitor thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,154 | INFO     | [job] job monitor thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,164 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,191 | INFO     | [payload] control thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,334 | INFO     | [data] copytool_in thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,336 | INFO     | [job] control thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,348 | INFO     | [data] control thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:27,579 | INFO     | [payload] failed_post thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:28,192 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:28,298 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:28,503 | INFO     | [data] copytool_out thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:28,508 | INFO     | [job] validate thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:28,532 | INFO     | [payload] validate_post thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:28,633 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:29,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 03:07:57] 2026-04-10 01:07:33,087 | INFO     | [monitor] cgroup control has ended
[2026-04-10 03:07:57] 2026-04-10 01:07:33,543 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 03:07:57] 2026-04-10 01:07:34,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718047004480)>', '<ExcThread(monitor, started 140716877539072)>']
[2026-04-10 03:07:57] 2026-04-10 01:07:39,969 | INFO     | all workflow threads have been joined
[2026-04-10 03:07:57] 2026-04-10 01:07:39,969 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 03:07:57] 2026-04-10 01:07:39,969 | INFO     | traces error code: 0
[2026-04-10 03:07:57] 2026-04-10 01:07:39,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 03:07:57] 2026-04-10 01:07:56,991 | INFO     | PID=727228 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-10 03:07:57] 2026-04-10 01:07:56,992 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 03:07:57] 2026-04-10 01:07:56,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 03:07:57] 2026-04-10 01:07:56,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 03:07:57] 2026-04-10 01:07:56,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 03:07:57] 2026-04-10 01:07:56,992 | CRITICAL | thread 'MainThread' is not alive
[2026-04-10 03:07:57] 2026-04-10 01:07:56,992 | INFO     | [monitor] control thread has ended
[2026-04-10 03:07:57] 2026-04-10 01:07:57,062 [wrapper] ==== pilot stdout END ====
[2026-04-10 03:07:57] 2026-04-10 01:07:57,065 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 03:07:57] 2026-04-10 01:07:57,069 [wrapper] pilotpid: 727228
[2026-04-10 03:07:57] 2026-04-10 01:07:57,073 [wrapper] Pilot exit status: 0
[2026-04-10 03:07:57] 2026-04-10 01:07:57,084 [wrapper] pandaids: 7083227040
[2026-04-10 03:07:57] 2026-04-10 01:07:57,112 [wrapper] cleanup supervisor_pilot  745533 727229
[2026-04-10 03:07:57] 2026-04-10 01:07:57,116 [wrapper] Test setup, not cleaning
[2026-04-10 03:07:57] 2026-04-10 01:07:57,120 [wrapper] apfmon messages muted
[2026-04-10 03:07:57] 2026-04-10 01:07:57,123 [wrapper] ==== wrapper stdout END ====
[2026-04-10 03:07:57] 2026-04-10 01:07:57,127 [wrapper] ==== wrapper stderr END ====
[2026-04-10 03:07:57]  *** Error codes and diagnostics ***
[2026-04-10 03:07:57]     "exeErrorCode": 0,
[2026-04-10 03:07:57]     "pilotErrorCode": 0,
[2026-04-10 03:07:57]  *** Listing of results directory ***
[2026-04-10 03:07:57] total 410648
[2026-04-10 03:07:57] -rwx------ 1 boinc boinc     36322 Apr  9 22:58 runpilot2-wrapper.sh
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc    644190 Apr  9 23:06 pilot3.tar.gz
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc      5094 Apr  9 23:06 queuedata.json
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc       100 Apr 10 01:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 03:07:57] -rwxr-xr-x 1 boinc boinc      7986 Apr 10 01:52 run_atlas
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc       105 Apr 10 01:52 job.xml
[2026-04-10 03:07:57] -rw-r--r-- 2 boinc boinc 224685041 Apr 10 01:52 EVNT.49263206._000343.pool.root.1
[2026-04-10 03:07:57] -rw-r--r-- 2 boinc boinc    656927 Apr 10 01:52 input.tar.gz
[2026-04-10 03:07:57] -rw-r--r-- 2 boinc boinc     15665 Apr 10 01:52 start_atlas.sh
[2026-04-10 03:07:57] drwxrwx--x 2 boinc boinc      4096 Apr 10 01:52 shared
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc         0 Apr 10 01:52 boinc_setup_complete
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc      6287 Apr 10 01:52 init_data.xml
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc         0 Apr 10 01:52 boinc_lockfile
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc      2573 Apr 10 01:52 pandaJob.out
[2026-04-10 03:07:57] -rw------- 1 boinc boinc    997884 Apr 10 01:52 agis_schedconf.cvmfs.json
[2026-04-10 03:07:57] -rw------- 1 boinc boinc   1511579 Apr 10 01:52 agis_ddmendpoints.agis.ALL.json
[2026-04-10 03:07:57] -rw------- 1 boinc boinc       423 Apr 10 01:52 workernode_map.json
[2026-04-10 03:07:57] drwx------ 5 boinc boinc      4096 Apr 10 01:52 pilot3
[2026-04-10 03:07:57] -rw------- 1 boinc boinc 190422697 Apr 10 03:07 HITS.49263208._026076.pool.root.1
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc       488 Apr 10 03:07 boinc_task_state.xml
[2026-04-10 03:07:57] -rw------- 1 boinc boinc      1038 Apr 10 03:07 memory_monitor_summary.json
[2026-04-10 03:07:57] -rw------- 1 boinc boinc    231656 Apr 10 03:07 log.49263208._026076.job.log.tgz.1
[2026-04-10 03:07:57] -rw------- 1 boinc boinc      6340 Apr 10 03:07 heartbeat_new.json
[2026-04-10 03:07:57] -rw------- 1 boinc boinc      6231 Apr 10 03:07 heartbeat.json
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc        27 Apr 10 03:07 wrapper_checkpoint.txt
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc      8192 Apr 10 03:07 boinc_mmap_file
[2026-04-10 03:07:57] -rw------- 1 boinc boinc        95 Apr 10 03:07 pilot_heartbeat.json
[2026-04-10 03:07:57] -rw------- 1 boinc boinc       816 Apr 10 03:07 pilotlog.txt
[2026-04-10 03:07:57] -rw------- 1 boinc boinc    442771 Apr 10 03:07 log.49263208._026076.job.log.1
[2026-04-10 03:07:57] -rw------- 1 boinc boinc       357 Apr 10 03:07 output.list
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc       410 Apr 10 03:07 runtime_log
[2026-04-10 03:07:57] -rw------- 1 boinc boinc    696320 Apr 10 03:07 result.tar.gz
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc      8533 Apr 10 03:07 runtime_log.err
[2026-04-10 03:07:57] -rw------- 1 boinc boinc       660 Apr 10 03:07 12ef07691c1c.diag
[2026-04-10 03:07:57] -rw-r--r-- 1 boinc boinc     10056 Apr 10 03:07 stderr.txt
[2026-04-10 03:07:57] HITS file was successfully produced:
[2026-04-10 03:07:57] -rw------- 1 boinc boinc 190422697 Apr 10 03:07 shared/HITS.pool.root.1
[2026-04-10 03:07:57]  *** Contents of shared directory: ***
[2026-04-10 03:07:57] total 406728
[2026-04-10 03:07:57] -rw-r--r-- 2 boinc boinc 224685041 Apr 10 01:52 ATLAS.root_0
[2026-04-10 03:07:57] -rw-r--r-- 2 boinc boinc    656927 Apr 10 01:52 input.tar.gz
[2026-04-10 03:07:57] -rw-r--r-- 2 boinc boinc     15665 Apr 10 01:52 start_atlas.sh
[2026-04-10 03:07:57] -rw------- 1 boinc boinc 190422697 Apr 10 03:07 HITS.pool.root.1
[2026-04-10 03:07:57] -rw------- 1 boinc boinc    696320 Apr 10 03:07 result.tar.gz
03:07:59 (723092): run_atlas exited; CPU time 16447.669273
03:07:59 (723092): called boinc_finish(0)

</stderr_txt>
]]>

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