Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:05 (22975): wrapper (7.7.26015): starting
01:38:05 (22975): wrapper: running run_atlas (--nthreads 8)
[2026-04-10 01:38:05] Arguments: --nthreads 8
[2026-04-10 01:38:05] Threads: 8
[2026-04-10 01:38:05] Checking for CVMFS
[2026-04-10 01:38:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 01:38:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 01:38:08] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 01:38:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 01:38:10] 2.11.2.0 13596 12104 99712 158278 3 118 25065057 25165824 541 130560 0 3986520 99.832 3077993 12015 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-10 01:38:10] CVMFS is ok
[2026-04-10 01:38:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 01:38:10] Checking for apptainer binary...
[2026-04-10 01:38:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 01:38:10] Running /usr/bin/apptainer --version
[2026-04-10 01:38:10] apptainer version 1.3.2-1.el7
[2026-04-10 01:38:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 01:38:31] cg-vwn412.simple-grid.lan
[2026-04-10 01:38:31] apptainer works
[2026-04-10 01:38:31] Set ATHENA_PROC_NUMBER=8
[2026-04-10 01:38:31] Set ATHENA_CORE_NUMBER=8
[2026-04-10 01:38:31] Starting ATLAS job with PandaID=7082891018
[2026-04-10 01:38:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 06:08:22]  *** The last 200 lines of the pilot log: ***
[2026-04-10 06:08:22] 2026-04-10 04:07:34,156 | INFO     | this job has now completed (state=finished)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,156 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,156 | INFO     | log transfer has been attempted: DONE
[2026-04-10 06:08:22] 2026-04-10 04:07:34,156 | INFO     | job 7082891018 has finished - writing final server update
[2026-04-10 06:08:22] 2026-04-10 04:07:34,157 | INFO     | total number of processed events: 400 (read)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,159 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7082891018/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,160 | INFO     | extracted standard info from prmon json
[2026-04-10 06:08:22] 2026-04-10 04:07:34,160 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 06:08:22] 2026-04-10 04:07:34,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 06:08:22] 2026-04-10 04:07:34,160 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 06:08:22] 2026-04-10 04:07:34,166 | INFO     | fitting pss+swap vs Time
[2026-04-10 06:08:22] 2026-04-10 04:07:34,167 | INFO     | sum of square deviations: 5021496942.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,169 | INFO     | sum of deviations: 138300022706.99997
[2026-04-10 06:08:22] 2026-04-10 04:07:34,169 | INFO     | mean x (centered): 0.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,169 | INFO     | mean y: 2417422.2885375493
[2026-04-10 06:08:22] 2026-04-10 04:07:34,170 | INFO     | intersect: 2417422.2885375493
[2026-04-10 06:08:22] 2026-04-10 04:07:34,170 | INFO     | chi2: 8.413009731039057
[2026-04-10 06:08:22] 2026-04-10 04:07:34,171 | INFO     | sum of square deviations: 4729621702.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,173 | INFO     | sum of deviations: 151791835140.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,173 | INFO     | mean x (centered): 0.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,173 | INFO     | mean y: 2424329.6532258065
[2026-04-10 06:08:22] 2026-04-10 04:07:34,174 | INFO     | intersect: 2424329.6532258065
[2026-04-10 06:08:22] 2026-04-10 04:07:34,174 | INFO     | chi2: 7.707672048573859
[2026-04-10 06:08:22] 2026-04-10 04:07:34,174 | INFO     | current chi2=7.707672048573859 (change=8.38389238827238 %)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,174 | INFO     | right removable region: 247
[2026-04-10 06:08:22] 2026-04-10 04:07:34,175 | INFO     | sum of square deviations: 4729621702.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,177 | INFO     | sum of deviations: 47789951081.00001
[2026-04-10 06:08:22] 2026-04-10 04:07:34,177 | INFO     | mean x (centered): 0.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,177 | INFO     | mean y: 2464697.7983870967
[2026-04-10 06:08:22] 2026-04-10 04:07:34,178 | INFO     | intersect: 2464697.7983870967
[2026-04-10 06:08:22] 2026-04-10 04:07:34,178 | INFO     | chi2: 3.0985899733297293
[2026-04-10 06:08:22] 2026-04-10 04:07:34,178 | INFO     | current chi2=3.0985899733297293 (change=63.169067047459194 %)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,179 | INFO     | sum of square deviations: 4449281562.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,181 | INFO     | sum of deviations: -9310235654.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,181 | INFO     | mean x (centered): 0.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,181 | INFO     | mean y: 2495638.3991769548
[2026-04-10 06:08:22] 2026-04-10 04:07:34,182 | INFO     | intersect: 2495638.3991769548
[2026-04-10 06:08:22] 2026-04-10 04:07:34,182 | INFO     | chi2: 0.9096363226967585
[2026-04-10 06:08:22] 2026-04-10 04:07:34,182 | INFO     | current chi2=0.9096363226967585 (change=70.64354010933341 %)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,183 | INFO     | sum of square deviations: 4180243959.5
[2026-04-10 06:08:22] 2026-04-10 04:07:34,185 | INFO     | sum of deviations: -14487163279.999998
[2026-04-10 06:08:22] 2026-04-10 04:07:34,185 | INFO     | mean x (centered): 0.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,185 | INFO     | mean y: 2498530.9663865548
[2026-04-10 06:08:22] 2026-04-10 04:07:34,185 | INFO     | intersect: 2498530.9663865548
[2026-04-10 06:08:22] 2026-04-10 04:07:34,186 | INFO     | chi2: 0.8681115389459189
[2026-04-10 06:08:22] 2026-04-10 04:07:34,186 | INFO     | current chi2=0.8681115389459189 (change=4.564987425714596 %)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,186 | INFO     | left removable region: 15
[2026-04-10 06:08:22] 2026-04-10 04:07:34,186 | INFO     | sum of square deviations: 3871990738.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,188 | INFO     | sum of deviations: 1057261516.0000002
[2026-04-10 06:08:22] 2026-04-10 04:07:34,189 | INFO     | mean x (centered): 0.0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,189 | INFO     | mean y: 2507558.327586207
[2026-04-10 06:08:22] 2026-04-10 04:07:34,189 | INFO     | intersect: 2507558.327586207
[2026-04-10 06:08:22] 2026-04-10 04:07:34,189 | INFO     | chi2: 0.07120205864244564
[2026-04-10 06:08:22] 2026-04-10 04:07:34,190 | INFO     | current memory leak: 0.27 B/s (using 232 data points, chi2=0.07)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,190 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,190 | INFO     | ..............................
[2026-04-10 06:08:22] 2026-04-10 04:07:34,190 | INFO     | . Timing measurements:
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . get job = 0 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . initial setup = 126 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . payload setup = 202 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . stage-in = 0 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . payload execution = 15541 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . stage-out = 3 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | . log creation = 1 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,191 | INFO     | ..............................
[2026-04-10 06:08:22] 2026-04-10 04:07:34,307 | INFO     | 
[2026-04-10 06:08:22] 2026-04-10 04:07:34,307 | INFO     | job summary report
[2026-04-10 06:08:22] 2026-04-10 04:07:34,307 | INFO     | --------------------------------------------------
[2026-04-10 06:08:22] 2026-04-10 04:07:34,307 | INFO     | PanDA job id: 7082891018
[2026-04-10 06:08:22] 2026-04-10 04:07:34,307 | INFO     | task id: 49263208
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | errors: (none)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | pilot state: finished 
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | transexitcode: 0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | exeerrorcode: 0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | exeerrordiag: 
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | exitcode: 0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | exitmsg: OK
[2026-04-10 06:08:22] 2026-04-10 04:07:34,308 | INFO     | cpuconsumptiontime: 59072 s
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | nevents: 400
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | neventsw: 0
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | pid: 31498
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | pgrp: 31498
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | corecount: 8
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | event service: False
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | sizes: {0: 2279010, 1: 2279695, 2: 2280096, 3: 2281524, 13: 2281552, 15748: 2312948, 15754: 2321946, 15755: 2322196}
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | --------------------------------------------------
[2026-04-10 06:08:22] 2026-04-10 04:07:34,309 | INFO     | 
[2026-04-10 06:08:22] 2026-04-10 04:07:34,310 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-04-10 06:08:22] 2026-04-10 04:07:34,350 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,350 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,350 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,350 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,353 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 06:08:22] 2026-04-10 04:07:34,353 | INFO     | job 7082891018 has completed (purged errors)
[2026-04-10 06:08:22] 2026-04-10 04:07:34,353 | INFO     | overall cleanup function is called
[2026-04-10 06:08:22] 2026-04-10 04:07:35,362 | INFO     | --- collectZombieJob: --- 10, [31498]
[2026-04-10 06:08:22] 2026-04-10 04:07:35,362 | INFO     | zombie collector waiting for pid 31498
[2026-04-10 06:08:22] 2026-04-10 04:07:35,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 06:08:22] 2026-04-10 04:07:35,362 | INFO     | collected zombie processes
[2026-04-10 06:08:22] 2026-04-10 04:07:35,362 | INFO     | will attempt to kill all subprocesses of pid=31498
[2026-04-10 06:08:22] 2026-04-10 04:07:35,473 | INFO     | process IDs to be killed: [31498] (in reverse order)
[2026-04-10 06:08:22] 2026-04-10 04:07:36,118 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 06:08:22] 2026-04-10 04:07:36,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 06:08:22] 2026-04-10 04:07:36,121 | INFO     | did not find any defunct processes belonging to 31498
[2026-04-10 06:08:22] 2026-04-10 04:07:36,123 | INFO     | did not find any defunct processes belonging to 31498
[2026-04-10 06:08:22] 2026-04-10 04:07:36,123 | INFO     | Ready for new job
[2026-04-10 06:08:22] 2026-04-10 04:07:36,125 | INFO     | **************************************
[2026-04-10 06:08:22] 2026-04-10 04:07:36,125 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 06:08:22] 2026-04-10 04:07:36,125 | INFO     | **************************************
[2026-04-10 06:08:22] 2026-04-10 04:07:36,125 | INFO     | 
[2026-04-10 06:08:22] 2026-04-10 04:07:36,126 | INFO     | pilot is running in a VM
[2026-04-10 06:08:22] 2026-04-10 04:07:36,126 | INFO     | architecture information:
[2026-04-10 06:08:22] 2026-04-10 04:07:36,132 | INFO     | executing command: cat /etc/os-release
[2026-04-10 06:08:22] 2026-04-10 04:07:36,236 | INFO     | cat /etc/os-release:
[2026-04-10 06:08:22] NAME="CentOS Linux"
[2026-04-10 06:08:22] VERSION="7 (Core)"
[2026-04-10 06:08:22] ID="centos"
[2026-04-10 06:08:22] ID_LIKE="rhel fedora"
[2026-04-10 06:08:22] VERSION_ID="7"
[2026-04-10 06:08:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 06:08:22] ANSI_COLOR="0;31"
[2026-04-10 06:08:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 06:08:22] HOME_URL="https://www.centos.org/"
[2026-04-10 06:08:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 06:08:22] 
[2026-04-10 06:08:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 06:08:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 06:08:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 06:08:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 06:08:22] 
[2026-04-10 06:08:22] 2026-04-10 04:07:36,237 | INFO     | **************************************
[2026-04-10 06:08:22] 2026-04-10 04:07:36,740 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-04-10 06:08:22] 2026-04-10 04:07:36,830 | INFO     | sufficient remaining disk space (497447600128 B)
[2026-04-10 06:08:22] 2026-04-10 04:07:36,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 06:08:22] 2026-04-10 04:07:36,831 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 06:08:22] 2026-04-10 04:07:36,831 | INFO     | update_server=False
[2026-04-10 06:08:22] 2026-04-10 04:07:36,831 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 06:08:22] 2026-04-10 04:07:36,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 06:08:22] 2026-04-10 04:07:37,453 | INFO     | all job control threads have been joined
[2026-04-10 06:08:22] 2026-04-10 04:07:37,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 06:08:22] 2026-04-10 04:07:37,565 | INFO     | aborting loop
[2026-04-10 06:08:22] 2026-04-10 04:07:37,741 | INFO     | all payload control threads have been joined
[2026-04-10 06:08:22] 2026-04-10 04:07:37,837 | INFO     | [job] retrieve thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:37,913 | INFO     | all data control threads have been joined
[2026-04-10 06:08:22] 2026-04-10 04:07:37,972 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,031 | INFO     | [data] copytool_in thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,202 | INFO     | [payload] validate_post thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,459 | INFO     | [job] control thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,571 | INFO     | [job] job monitor thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,747 | INFO     | [payload] control thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,841 | INFO     | [data] copytool_out thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,847 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,919 | INFO     | [data] control thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,956 | INFO     | [job] validate thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:38,993 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:39,026 | INFO     | [payload] failed_post thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:39,281 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:39,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 06:08:22] 2026-04-10 04:07:40,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 06:08:22] 2026-04-10 04:07:40,331 | INFO     | [job] queue monitor thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:07:44,173 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 06:08:22] 2026-04-10 04:08:05,545 | INFO     | PID=27045 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-10 06:08:22] 2026-04-10 04:08:05,545 | INFO     | .. there are 2 such processes running
[2026-04-10 06:08:22] 2026-04-10 04:08:05,545 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 06:08:22] 2026-04-10 04:08:05,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 06:08:22] 2026-04-10 04:08:05,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 06:08:22] 2026-04-10 04:08:12,803 | INFO     | [monitor] cgroup control has ended
[2026-04-10 06:08:22] 2026-04-10 04:08:14,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119413864256)>', '<ExcThread(monitor, started 140119113709312)>']
[2026-04-10 06:08:22] 2026-04-10 04:08:14,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 06:08:22] 2026-04-10 04:08:14,599 | INFO     | [monitor] control thread has ended
[2026-04-10 06:08:22] 2026-04-10 04:08:19,405 | INFO     | all workflow threads have been joined
[2026-04-10 06:08:22] 2026-04-10 04:08:19,405 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 06:08:22] 2026-04-10 04:08:19,405 | INFO     | traces error code: 0
[2026-04-10 06:08:22] 2026-04-10 04:08:19,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 06:08:22] 2026-04-10 04:08:19,827 [wrapper] ==== pilot stdout END ====
[2026-04-10 06:08:22] 2026-04-10 04:08:19,918 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 06:08:22] 2026-04-10 04:08:19,976 [wrapper] pilotpid: 27045
[2026-04-10 06:08:22] 2026-04-10 04:08:20,070 [wrapper] Pilot exit status: 0
[2026-04-10 06:08:22] 2026-04-10 04:08:20,398 [wrapper] pandaids: 7082891018
[2026-04-10 06:08:22] 2026-04-10 04:08:21,089 [wrapper] cleanup supervisor_pilot  5542 27046
[2026-04-10 06:08:22] 2026-04-10 04:08:21,160 [wrapper] Test setup, not cleaning
[2026-04-10 06:08:22] 2026-04-10 04:08:21,247 [wrapper] apfmon messages muted
[2026-04-10 06:08:22] 2026-04-10 04:08:21,341 [wrapper] ==== wrapper stdout END ====
[2026-04-10 06:08:22] 2026-04-10 04:08:21,435 [wrapper] ==== wrapper stderr END ====
[2026-04-10 06:08:22]  *** Error codes and diagnostics ***
[2026-04-10 06:08:22]     "exeErrorCode": 0,
[2026-04-10 06:08:22]     "pilotErrorCode": 0,
[2026-04-10 06:08:22]  *** Listing of results directory ***
[2026-04-10 06:08:22] total 415588
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc    644190 Apr  9 22:03 pilot3.tar.gz
[2026-04-10 06:08:22] -rwx------. 1 boinc boinc     36322 Apr  9 22:52 runpilot2-wrapper.sh
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc      5094 Apr  9 22:57 queuedata.json
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc       100 Apr 10 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 06:08:22] -rwxr-xr-x. 1 boinc boinc      7986 Apr 10 01:38 run_atlas
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc       105 Apr 10 01:38 job.xml
[2026-04-10 06:08:22] -rw-r--r--. 2 boinc boinc 222580746 Apr 10 01:38 EVNT.49263206._000522.pool.root.1
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc      6306 Apr 10 01:38 init_data.xml
[2026-04-10 06:08:22] -rw-r--r--. 2 boinc boinc     15665 Apr 10 01:38 start_atlas.sh
[2026-04-10 06:08:22] drwxrwx--x. 2 boinc boinc        68 Apr 10 01:38 shared
[2026-04-10 06:08:22] -rw-r--r--. 2 boinc boinc    656926 Apr 10 01:38 input.tar.gz
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc         0 Apr 10 01:38 boinc_lockfile
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc      2575 Apr 10 01:38 pandaJob.out
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc       415 Apr 10 01:44 workernode_map.json
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc    997884 Apr 10 01:44 agis_schedconf.cvmfs.json
[2026-04-10 06:08:22] drwx------. 5 boinc boinc      4096 Apr 10 01:44 pilot3
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc 195199618 Apr 10 06:05 HITS.49263208._025494.pool.root.1
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc       489 Apr 10 06:06 boinc_task_state.xml
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc        95 Apr 10 06:07 pilot_heartbeat.json
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc      1011 Apr 10 06:07 memory_monitor_summary.json
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc   1511579 Apr 10 06:07 agis_ddmendpoints.agis.ALL.json
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc    406458 Apr 10 06:07 log.49263208._025494.job.log.tgz.1
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc      6339 Apr 10 06:07 heartbeat_new.json
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc      6230 Apr 10 06:07 heartbeat.json
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc      8192 Apr 10 06:08 boinc_mmap_file
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc        28 Apr 10 06:08 wrapper_checkpoint.txt
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc      4879 Apr 10 06:08 pilotlog.txt
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc   1459217 Apr 10 06:08 log.49263208._025494.job.log.1
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc       357 Apr 10 06:08 output.list
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc       410 Apr 10 06:08 runtime_log
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc   1884160 Apr 10 06:08 result.tar.gz
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc      8438 Apr 10 06:08 runtime_log.err
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc       656 Apr 10 06:08 118d32ca1fd5.diag
[2026-04-10 06:08:22] -rw-r--r--. 1 boinc boinc     20637 Apr 10 06:08 stderr.txt
[2026-04-10 06:08:22] HITS file was successfully produced:
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc 195199618 Apr 10 06:05 shared/HITS.pool.root.1
[2026-04-10 06:08:22]  *** Contents of shared directory: ***
[2026-04-10 06:08:22] total 410496
[2026-04-10 06:08:22] -rw-r--r--. 2 boinc boinc 222580746 Apr 10 01:38 ATLAS.root_0
[2026-04-10 06:08:22] -rw-r--r--. 2 boinc boinc     15665 Apr 10 01:38 start_atlas.sh
[2026-04-10 06:08:22] -rw-r--r--. 2 boinc boinc    656926 Apr 10 01:38 input.tar.gz
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc 195199618 Apr 10 06:05 HITS.pool.root.1
[2026-04-10 06:08:22] -rw-------. 1 boinc boinc   1884160 Apr 10 06:08 result.tar.gz
06:08:24 (22975): run_atlas exited; CPU time 59251.034378
06:08:24 (22975): called boinc_finish(0)

</stderr_txt>
]]>

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