Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:35:35 (83494): wrapper (7.7.26015): starting
08:35:35 (83494): wrapper: running run_atlas (--nthreads 4)
[2026-04-11 08:35:35] Arguments: --nthreads 4
[2026-04-11 08:35:35] Threads: 4
[2026-04-11 08:35:35] Checking for CVMFS
[2026-04-11 08:35:35] No cvmfs_config command found, will try listing directly
[2026-04-11 08:35:35] CVMFS is ok
[2026-04-11 08:35:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 08:35:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 08:35:35] Further information can be found at the LHC@home message board.
[2026-04-11 08:35:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 08:35:35] Checking for apptainer binary...
[2026-04-11 08:35:35] which: no apptainer in ((null))
[2026-04-11 08:35:35] apptainer is not installed, using version from CVMFS
[2026-04-11 08:35:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 08:35:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-04-11 08:35:35] apptainer works
[2026-04-11 08:35:35] Set ATHENA_PROC_NUMBER=4
[2026-04-11 08:35:35] Set ATHENA_CORE_NUMBER=4
[2026-04-11 08:35:35] Starting ATLAS job with PandaID=7074878364
[2026-04-11 08:35:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 11:14:21]  *** The last 200 lines of the pilot log: ***
[2026-04-11 11:14:21] 2026-04-11 09:13:34,708 | INFO     | job 7074878364 has finished - writing final server update
[2026-04-11 11:14:21] 2026-04-11 09:13:34,709 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3996981/.job.ad'
[2026-04-11 11:14:21] 2026-04-11 09:13:34,709 | INFO     | total number of processed events: 400 (read)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,734 | INFO     | using path: /var/lib/boinc/var/slot92/slots/0/PanDA_Pilot-7074878364/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,734 | INFO     | extracted standard info from prmon json
[2026-04-11 11:14:21] 2026-04-11 09:13:34,735 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 11:14:21] 2026-04-11 09:13:34,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 11:14:21] 2026-04-11 09:13:34,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 11:14:21] 2026-04-11 09:13:34,738 | INFO     | fitting pss+swap vs Time
[2026-04-11 11:14:21] 2026-04-11 09:13:34,738 | INFO     | sum of square deviations: 1154663510.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,739 | INFO     | sum of deviations: 4213516745.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,739 | INFO     | mean x (centered): 0.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,739 | INFO     | mean y: 2309794.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,740 | INFO     | intersect: 2309794.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,740 | INFO     | chi2: 2.171091916821612
[2026-04-11 11:14:21] 2026-04-11 09:13:34,740 | INFO     | sum of square deviations: 1046484737.5
[2026-04-11 11:14:21] 2026-04-11 09:13:34,741 | INFO     | sum of deviations: 13764182038.5
[2026-04-11 11:14:21] 2026-04-11 09:13:34,741 | INFO     | mean x (centered): 0.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,741 | INFO     | mean y: 2322897.486666667
[2026-04-11 11:14:21] 2026-04-11 09:13:34,741 | INFO     | intersect: 2322897.486666667
[2026-04-11 11:14:21] 2026-04-11 09:13:34,742 | INFO     | chi2: 1.3614250865664972
[2026-04-11 11:14:21] 2026-04-11 09:13:34,742 | INFO     | current chi2=1.3614250865664972 (change=37.29307008983909 %)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,742 | INFO     | sum of square deviations: 945282840.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,743 | INFO     | sum of deviations: 13355410333.000004
[2026-04-11 11:14:21] 2026-04-11 09:13:34,743 | INFO     | mean x (centered): 0.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,743 | INFO     | mean y: 2322281.2620689655
[2026-04-11 11:14:21] 2026-04-11 09:13:34,743 | INFO     | intersect: 2322281.2620689655
[2026-04-11 11:14:21] 2026-04-11 09:13:34,743 | INFO     | chi2: 1.3629209657266579
[2026-04-11 11:14:21] 2026-04-11 09:13:34,744 | INFO     | current chi2=1.3629209657266579 (change=-0.10987598031804238 %)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,744 | INFO     | right removable region: 144
[2026-04-11 11:14:21] 2026-04-11 09:13:34,744 | INFO     | sum of square deviations: 1046484737.5
[2026-04-11 11:14:21] 2026-04-11 09:13:34,745 | INFO     | sum of deviations: -15198897311.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,745 | INFO     | mean x (centered): 0.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,745 | INFO     | mean y: 2336691.64
[2026-04-11 11:14:21] 2026-04-11 09:13:34,745 | INFO     | intersect: 2336691.64
[2026-04-11 11:14:21] 2026-04-11 09:13:34,745 | INFO     | chi2: 0.8444474430072122
[2026-04-11 11:14:21] 2026-04-11 09:13:34,745 | INFO     | current chi2=0.8444474430072122 (change=61.10494279563032 %)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,746 | INFO     | sum of square deviations: 945282840.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | sum of deviations: -14107884068.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | mean x (centered): 0.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | mean y: 2335041.0689655175
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | intersect: 2335041.0689655175
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | chi2: 0.8449072909365266
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | current chi2=0.8449072909365266 (change=-0.054455482472280874 %)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,747 | INFO     | left removable region: 10
[2026-04-11 11:14:21] 2026-04-11 09:13:34,748 | INFO     | sum of square deviations: 746051197.5
[2026-04-11 11:14:21] 2026-04-11 09:13:34,748 | INFO     | sum of deviations: -4361676351.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,748 | INFO     | mean x (centered): 0.0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,749 | INFO     | mean y: 2350395.9850746267
[2026-04-11 11:14:21] 2026-04-11 09:13:34,749 | INFO     | intersect: 2350395.9850746267
[2026-04-11 11:14:21] 2026-04-11 09:13:34,749 | INFO     | chi2: 0.006703220667441628
[2026-04-11 11:14:21] 2026-04-11 09:13:34,749 | INFO     | current memory leak: -5.85 B/s (using 134 data points, chi2=0.01)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,749 | INFO     | could have reported an average CPU frequency of 2717 MHz (9 samples)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,749 | INFO     | ..............................
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . Timing measurements:
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . get job = 0 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . initial setup = 8 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . payload setup = 15 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . stage-in = 0 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . payload execution = 9421 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . stage-out = 0 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | . log creation = 0 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,750 | INFO     | ..............................
[2026-04-11 11:14:21] 2026-04-11 09:13:34,975 | INFO     | 
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | job summary report
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | --------------------------------------------------
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | PanDA job id: 7074878364
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | task id: 49499874
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | errors: (none)
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 11:14:21] 2026-04-11 09:13:34,978 | INFO     | pilot state: finished 
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | transexitcode: 0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | exeerrorcode: 0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | exeerrordiag: 
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | exitcode: 0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | exitmsg: OK
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | cpuconsumptiontime: 35753 s
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | nevents: 400
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | neventsw: 0
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | pid: 99158
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | pgrp: 99158
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | corecount: 4
[2026-04-11 11:14:21] 2026-04-11 09:13:34,979 | INFO     | event service: False
[2026-04-11 11:14:21] 2026-04-11 09:13:34,980 | INFO     | sizes: {0: 2279690, 1: 2281519, 12: 2281519, 9440: 2310280, 9441: 2310279, 9442: 2319539, 9444: 2319741}
[2026-04-11 11:14:21] 2026-04-11 09:13:34,980 | INFO     | --------------------------------------------------
[2026-04-11 11:14:21] 2026-04-11 09:13:34,980 | INFO     | 
[2026-04-11 11:14:21] 2026-04-11 09:13:34,980 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot92/slots/0
[2026-04-11 11:14:21] 2026-04-11 09:13:35,010 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,010 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,010 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | job 7074878364 has completed (purged errors)
[2026-04-11 11:14:21] 2026-04-11 09:13:35,012 | INFO     | overall cleanup function is called
[2026-04-11 11:14:21] 2026-04-11 09:13:36,021 | INFO     | --- collectZombieJob: --- 10, [99158]
[2026-04-11 11:14:21] 2026-04-11 09:13:36,022 | INFO     | zombie collector waiting for pid 99158
[2026-04-11 11:14:21] 2026-04-11 09:13:36,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 11:14:21] 2026-04-11 09:13:36,022 | INFO     | collected zombie processes
[2026-04-11 11:14:21] 2026-04-11 09:13:36,022 | INFO     | will attempt to kill all subprocesses of pid=99158
[2026-04-11 11:14:21] 2026-04-11 09:13:36,987 | INFO     | PID=87593 has CPU usage=16.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-11 11:14:21] 2026-04-11 09:13:36,988 | INFO     | .. there are 23 such processes running
[2026-04-11 11:14:21] 2026-04-11 09:13:37,420 | INFO     | process IDs to be killed: [99158] (in reverse order)
[2026-04-11 11:14:21] 2026-04-11 09:13:37,748 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 11:14:21] 2026-04-11 09:13:37,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 11:14:21] 2026-04-11 09:13:37,779 | INFO     | did not find any defunct processes belonging to 99158
[2026-04-11 11:14:21] 2026-04-11 09:13:37,807 | INFO     | did not find any defunct processes belonging to 99158
[2026-04-11 11:14:21] 2026-04-11 09:13:37,808 | INFO     | Ready for new job
[2026-04-11 11:14:21] 2026-04-11 09:13:37,810 | INFO     | **************************************
[2026-04-11 11:14:21] 2026-04-11 09:13:37,810 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 11:14:21] 2026-04-11 09:13:37,810 | INFO     | **************************************
[2026-04-11 11:14:21] 2026-04-11 09:13:37,810 | INFO     | 
[2026-04-11 11:14:21] 2026-04-11 09:13:37,818 | INFO     | architecture information:
[2026-04-11 11:14:21] 2026-04-11 09:13:37,819 | INFO     | executing command: cat /etc/os-release
[2026-04-11 11:14:21] 2026-04-11 09:13:37,843 | INFO     | cat /etc/os-release:
[2026-04-11 11:14:21] NAME="CentOS Linux"
[2026-04-11 11:14:21] VERSION="7 (Core)"
[2026-04-11 11:14:21] ID="centos"
[2026-04-11 11:14:21] ID_LIKE="rhel fedora"
[2026-04-11 11:14:21] VERSION_ID="7"
[2026-04-11 11:14:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 11:14:21] ANSI_COLOR="0;31"
[2026-04-11 11:14:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 11:14:21] HOME_URL="https://www.centos.org/"
[2026-04-11 11:14:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 11:14:21] 
[2026-04-11 11:14:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 11:14:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 11:14:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 11:14:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 11:14:21] 
[2026-04-11 11:14:21] 2026-04-11 09:13:37,843 | INFO     | **************************************
[2026-04-11 11:14:21] 2026-04-11 09:13:38,346 | INFO     | executing command: df -mP /var/lib/boinc/var/slot92/slots/0
[2026-04-11 11:14:21] 2026-04-11 09:13:38,375 | INFO     | sufficient remaining disk space (219835006976 B)
[2026-04-11 11:14:21] 2026-04-11 09:13:38,376 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 11:14:21] 2026-04-11 09:13:38,376 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 11:14:21] 2026-04-11 09:13:38,376 | INFO     | update_server=False
[2026-04-11 11:14:21] 2026-04-11 09:13:38,376 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 11:14:21] 2026-04-11 09:13:38,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 11:14:21] 2026-04-11 09:13:38,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 11:14:21] 2026-04-11 09:13:38,377 | INFO     | aborting loop
[2026-04-11 11:14:21] 2026-04-11 09:13:38,471 | INFO     | all data control threads have been joined
[2026-04-11 11:14:21] 2026-04-11 09:13:38,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 11:14:21] 2026-04-11 09:13:39,349 | INFO     | all payload control threads have been joined
[2026-04-11 11:14:21] 2026-04-11 09:13:39,381 | INFO     | [job] retrieve thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,382 | INFO     | [job] job monitor thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,419 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,476 | INFO     | [data] control thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,664 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,830 | INFO     | [payload] failed_post thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 11:14:21] 2026-04-11 09:13:39,872 | INFO     | [data] copytool_in thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:39,938 | INFO     | all job control threads have been joined
[2026-04-11 11:14:21] 2026-04-11 09:13:40,354 | INFO     | [payload] control thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:40,382 | INFO     | [data] copytool_out thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:40,613 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:40,635 | INFO     | [job] validate thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:40,672 | INFO     | [payload] validate_post thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:40,860 | INFO     | [job] queue monitor thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:40,943 | INFO     | [job] control thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:42,904 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:13:49,294 | INFO     | job.realtimelogging is not enabled
[2026-04-11 11:14:21] 2026-04-11 09:13:50,299 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 11:14:21] 2026-04-11 09:14:10,004 | INFO     | PID=87593 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 11:14:21] 2026-04-11 09:14:10,004 | INFO     | .. there are 23 such processes running
[2026-04-11 11:14:21] 2026-04-11 09:14:10,004 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 11:14:21] 2026-04-11 09:14:10,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 11:14:21] 2026-04-11 09:14:10,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 11:14:21] 2026-04-11 09:14:14,373 | INFO     | [monitor] cgroup control has ended
[2026-04-11 11:14:21] 2026-04-11 09:14:16,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23370017662784)>', '<ExcThread(monitor, started 23369711855360)>']
[2026-04-11 11:14:21] 2026-04-11 09:14:17,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 11:14:21] 2026-04-11 09:14:17,039 | INFO     | [monitor] control thread has ended
[2026-04-11 11:14:21] 2026-04-11 09:14:21,231 | INFO     | all workflow threads have been joined
[2026-04-11 11:14:21] 2026-04-11 09:14:21,231 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 11:14:21] 2026-04-11 09:14:21,231 | INFO     | traces error code: 0
[2026-04-11 11:14:21] 2026-04-11 09:14:21,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 11:14:21] 2026-04-11 09:14:21,376 [wrapper] ==== pilot stdout END ====
[2026-04-11 11:14:21] 2026-04-11 09:14:21,380 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 11:14:21] 2026-04-11 09:14:21,384 [wrapper] pilotpid: 87593
[2026-04-11 11:14:21] 2026-04-11 09:14:21,387 [wrapper] Pilot exit status: 0
[2026-04-11 11:14:21] 2026-04-11 09:14:21,403 [wrapper] pandaids: 7074878364
[2026-04-11 11:14:21] 2026-04-11 09:14:21,611 [wrapper] cleanup supervisor_pilot  409488 87594
[2026-04-11 11:14:21] 2026-04-11 09:14:21,615 [wrapper] Test setup, not cleaning
[2026-04-11 11:14:21] 2026-04-11 09:14:21,619 [wrapper] apfmon messages muted
[2026-04-11 11:14:21] 2026-04-11 09:14:21,623 [wrapper] ==== wrapper stdout END ====
[2026-04-11 11:14:21] 2026-04-11 09:14:21,627 [wrapper] ==== wrapper stderr END ====
[2026-04-11 11:14:21]  *** Error codes and diagnostics ***
[2026-04-11 11:14:21]     "exeErrorCode": 0,
[2026-04-11 11:14:21]     "pilotErrorCode": 0,
[2026-04-11 11:14:21]  *** Listing of results directory ***
[2026-04-11 11:14:21] total 462768
[2026-04-11 11:14:21] -rwx------. 1 boinc boinc     36322 Apr  9 20:00 runpilot2-wrapper.sh
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc    644190 Apr  9 20:14 pilot3.tar.gz
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc      5094 Apr  9 20:50 queuedata.json
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc       100 Apr 11 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 11:14:21] -rwxr-xr-x. 1 boinc boinc      7986 Apr 11 08:35 run_atlas
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc       105 Apr 11 08:35 job.xml
[2026-04-11 11:14:21] -rw-r--r--. 2 boinc boinc 294406359 Apr 11 08:35 EVNT.49475292._000003.pool.root.1
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc      6540 Apr 11 08:35 init_data.xml
[2026-04-11 11:14:21] -rw-r--r--. 2 boinc boinc     15665 Apr 11 08:35 start_atlas.sh
[2026-04-11 11:14:21] drwxrwx--x. 2 boinc boinc      4096 Apr 11 08:35 shared
[2026-04-11 11:14:21] -rw-r--r--. 2 boinc boinc    656900 Apr 11 08:35 input.tar.gz
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc         0 Apr 11 08:35 boinc_lockfile
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc      2547 Apr 11 08:35 pandaJob.out
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc    997844 Apr 11 08:35 agis_schedconf.cvmfs.json
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc   1511579 Apr 11 08:35 agis_ddmendpoints.agis.ALL.json
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc       443 Apr 11 08:35 workernode_map.json
[2026-04-11 11:14:21] drwx------. 5 boinc boinc      4096 Apr 11 08:35 pilot3
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc 173067583 Apr 11 11:12 HITS.49499874._000064.pool.root.1
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc       488 Apr 11 11:13 boinc_task_state.xml
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc        95 Apr 11 11:13 pilot_heartbeat.json
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc      1024 Apr 11 11:13 memory_monitor_summary.json
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc    292413 Apr 11 11:13 log.49499874._000064.job.log.tgz.1
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc      6355 Apr 11 11:13 heartbeat_new.json
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc      6246 Apr 11 11:13 heartbeat.json
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc      8192 Apr 11 11:14 boinc_mmap_file
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc        27 Apr 11 11:14 wrapper_checkpoint.txt
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc      4899 Apr 11 11:14 pilotlog.txt
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc    878037 Apr 11 11:14 log.49499874._000064.job.log.1
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc       357 Apr 11 11:14 output.list
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc       410 Apr 11 11:14 runtime_log
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc   1187840 Apr 11 11:14 result.tar.gz
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc      8826 Apr 11 11:14 runtime_log.err
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc       663 Apr 11 11:14 e92963e6cd98.diag
[2026-04-11 11:14:21] -rw-r--r--. 1 boinc boinc     20840 Apr 11 11:14 stderr.txt
[2026-04-11 11:14:21] HITS file was successfully produced:
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc 173067583 Apr 11 11:12 shared/HITS.pool.root.1
[2026-04-11 11:14:21]  *** Contents of shared directory: ***
[2026-04-11 11:14:21] total 458348
[2026-04-11 11:14:21] -rw-r--r--. 2 boinc boinc 294406359 Apr 11 08:35 ATLAS.root_0
[2026-04-11 11:14:21] -rw-r--r--. 2 boinc boinc     15665 Apr 11 08:35 start_atlas.sh
[2026-04-11 11:14:21] -rw-r--r--. 2 boinc boinc    656900 Apr 11 08:35 input.tar.gz
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc 173067583 Apr 11 11:12 HITS.pool.root.1
[2026-04-11 11:14:21] -rw-------. 1 boinc boinc   1187840 Apr 11 11:14 result.tar.gz
11:14:23 (83494): run_atlas exited; CPU time 36358.994749
11:14:23 (83494): called boinc_finish(0)

</stderr_txt>
]]>

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