Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:49:58 (3440696): wrapper (7.7.26015): starting
10:49:58 (3440696): wrapper: running run_atlas (--nthreads 4)
[2026-04-10 10:49:58] Arguments: --nthreads 4
[2026-04-10 10:49:58] Threads: 4
[2026-04-10 10:49:58] Checking for CVMFS
[2026-04-10 10:49:58] No cvmfs_config command found, will try listing directly
[2026-04-10 10:49:58] CVMFS is ok
[2026-04-10 10:49:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-10 10:49:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-10 10:49:58] Further information can be found at the LHC@home message board.
[2026-04-10 10:49:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 10:49:58] Checking for apptainer binary...
[2026-04-10 10:49:58] which: no apptainer in ((null))
[2026-04-10 10:49:58] apptainer is not installed, using version from CVMFS
[2026-04-10 10:49:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 10:49:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-04-10 10:49:58] apptainer works
[2026-04-10 10:49:58] Set ATHENA_PROC_NUMBER=4
[2026-04-10 10:49:58] Set ATHENA_CORE_NUMBER=4
[2026-04-10 10:49:58] Starting ATLAS job with PandaID=7072090068
[2026-04-10 10:49:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 14:17:43]  *** The last 200 lines of the pilot log: ***
[2026-04-10 14:17:43] 2026-04-10 12:16:54,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,130 | INFO     | job 7072090068 has state=finished
[2026-04-10 14:17:43] 2026-04-10 12:16:54,130 | INFO     | preparing for final server update for job 7072090068 in state='finished'
[2026-04-10 14:17:43] 2026-04-10 12:16:54,789 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,790 | INFO     | reading metadata from: /var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7072090068/jobReport.json
[2026-04-10 14:17:43] 2026-04-10 12:16:54,792 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot64/slots/0/workernode_map.json
[2026-04-10 14:17:43] 2026-04-10 12:16:54,793 | INFO     | this job has now completed (state=finished)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,793 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,793 | INFO     | log transfer has been attempted: DONE
[2026-04-10 14:17:43] 2026-04-10 12:16:54,793 | INFO     | job 7072090068 has finished - writing final server update
[2026-04-10 14:17:43] 2026-04-10 12:16:54,797 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_755635/.job.ad'
[2026-04-10 14:17:43] 2026-04-10 12:16:54,797 | INFO     | total number of processed events: 400 (read)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,810 | INFO     | using path: /var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7072090068/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,818 | INFO     | extracted standard info from prmon json
[2026-04-10 14:17:43] 2026-04-10 12:16:54,818 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 14:17:43] 2026-04-10 12:16:54,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 14:17:43] 2026-04-10 12:16:54,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 14:17:43] 2026-04-10 12:16:54,823 | INFO     | fitting pss+swap vs Time
[2026-04-10 14:17:43] 2026-04-10 12:16:54,824 | INFO     | sum of square deviations: 2593916542.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,825 | INFO     | sum of deviations: 14978018507.000006
[2026-04-10 14:17:43] 2026-04-10 12:16:54,825 | INFO     | mean x (centered): 0.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,825 | INFO     | mean y: 2328507.975369458
[2026-04-10 14:17:43] 2026-04-10 12:16:54,826 | INFO     | intersect: 2328507.975369458
[2026-04-10 14:17:43] 2026-04-10 12:16:54,826 | INFO     | chi2: 1.307601969400651
[2026-04-10 14:17:43] 2026-04-10 12:16:54,826 | INFO     | sum of square deviations: 2406926989.5
[2026-04-10 14:17:43] 2026-04-10 12:16:54,828 | INFO     | sum of deviations: 14547223940.999996
[2026-04-10 14:17:43] 2026-04-10 12:16:54,828 | INFO     | mean x (centered): 0.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,828 | INFO     | mean y: 2328157.02020202
[2026-04-10 14:17:43] 2026-04-10 12:16:54,828 | INFO     | intersect: 2328157.02020202
[2026-04-10 14:17:43] 2026-04-10 12:16:54,829 | INFO     | chi2: 1.308349484699937
[2026-04-10 14:17:43] 2026-04-10 12:16:54,829 | INFO     | current chi2=1.308349484699937 (change=-0.057166883866700685 %)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,829 | INFO     | right removable region: 197
[2026-04-10 14:17:43] 2026-04-10 12:16:54,829 | INFO     | sum of square deviations: 2406926989.5
[2026-04-10 14:17:43] 2026-04-10 12:16:54,830 | INFO     | sum of deviations: -8668517057.000002
[2026-04-10 14:17:43] 2026-04-10 12:16:54,831 | INFO     | mean x (centered): 0.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,831 | INFO     | mean y: 2347515.9696969697
[2026-04-10 14:17:43] 2026-04-10 12:16:54,831 | INFO     | intersect: 2347515.9696969697
[2026-04-10 14:17:43] 2026-04-10 12:16:54,831 | INFO     | chi2: 0.035252203653572386
[2026-04-10 14:17:43] 2026-04-10 12:16:54,831 | INFO     | current chi2=0.035252203653572386 (change=97.30405700828591 %)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,832 | INFO     | sum of square deviations: 2229146912.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,833 | INFO     | sum of deviations: -5922185122.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,833 | INFO     | mean x (centered): 0.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,833 | INFO     | mean y: 2345162.89119171
[2026-04-10 14:17:43] 2026-04-10 12:16:54,833 | INFO     | intersect: 2345162.89119171
[2026-04-10 14:17:43] 2026-04-10 12:16:54,834 | INFO     | chi2: 0.030358454299421165
[2026-04-10 14:17:43] 2026-04-10 12:16:54,834 | INFO     | current chi2=0.030358454299421165 (change=13.882109051231751 %)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,834 | INFO     | left removable region: 10
[2026-04-10 14:17:43] 2026-04-10 12:16:54,834 | INFO     | sum of square deviations: 2027639878.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,835 | INFO     | sum of deviations: -5820160486.999996
[2026-04-10 14:17:43] 2026-04-10 12:16:54,836 | INFO     | mean x (centered): 0.0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,836 | INFO     | mean y: 2345256.203208556
[2026-04-10 14:17:43] 2026-04-10 12:16:54,836 | INFO     | intersect: 2345256.203208556
[2026-04-10 14:17:43] 2026-04-10 12:16:54,836 | INFO     | chi2: 0.030156461849881095
[2026-04-10 14:17:43] 2026-04-10 12:16:54,836 | INFO     | current memory leak: -2.87 B/s (using 187 data points, chi2=0.03)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,837 | INFO     | could have reported an average CPU frequency of 2567 MHz (10 samples)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,837 | INFO     | ..............................
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . Timing measurements:
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . get job = 0 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . initial setup = 6 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . payload setup = 9 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . stage-in = 0 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . payload execution = 12367 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . stage-out = 1 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | . log creation = 0 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,839 | INFO     | ..............................
[2026-04-10 14:17:43] 2026-04-10 12:16:54,943 | INFO     | 
[2026-04-10 14:17:43] 2026-04-10 12:16:54,943 | INFO     | job summary report
[2026-04-10 14:17:43] 2026-04-10 12:16:54,943 | INFO     | --------------------------------------------------
[2026-04-10 14:17:43] 2026-04-10 12:16:54,943 | INFO     | PanDA job id: 7072090068
[2026-04-10 14:17:43] 2026-04-10 12:16:54,943 | INFO     | task id: 49263208
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | errors: (none)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | pilot state: finished 
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | transexitcode: 0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | exeerrorcode: 0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | exeerrordiag: 
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | exitcode: 0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | exitmsg: OK
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | cpuconsumptiontime: 46010 s
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | nevents: 400
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | neventsw: 0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | pid: 3450135
[2026-04-10 14:17:43] 2026-04-10 12:16:54,944 | INFO     | pgrp: 3450135
[2026-04-10 14:17:43] 2026-04-10 12:16:54,945 | INFO     | corecount: 4
[2026-04-10 14:17:43] 2026-04-10 12:16:54,945 | INFO     | event service: False
[2026-04-10 14:17:43] 2026-04-10 12:16:54,945 | INFO     | sizes: {0: 2279662, 1: 2281547, 12: 2281547, 12380: 2311348, 12382: 2320368, 12384: 2320424, 12387: 2320746}
[2026-04-10 14:17:43] 2026-04-10 12:16:54,945 | INFO     | --------------------------------------------------
[2026-04-10 14:17:43] 2026-04-10 12:16:54,945 | INFO     | 
[2026-04-10 14:17:43] 2026-04-10 12:16:54,945 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot64/slots/0
[2026-04-10 14:17:43] 2026-04-10 12:16:54,966 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 14:17:43] 2026-04-10 12:16:54,968 | INFO     | job 7072090068 has completed (purged errors)
[2026-04-10 14:17:43] 2026-04-10 12:16:54,969 | INFO     | overall cleanup function is called
[2026-04-10 14:17:43] 2026-04-10 12:16:55,976 | INFO     | --- collectZombieJob: --- 10, [3450135]
[2026-04-10 14:17:43] 2026-04-10 12:16:55,976 | INFO     | zombie collector waiting for pid 3450135
[2026-04-10 14:17:43] 2026-04-10 12:16:55,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 14:17:43] 2026-04-10 12:16:55,976 | INFO     | collected zombie processes
[2026-04-10 14:17:43] 2026-04-10 12:16:55,976 | INFO     | will attempt to kill all subprocesses of pid=3450135
[2026-04-10 14:17:43] 2026-04-10 12:16:56,389 | INFO     | process IDs to be killed: [3450135] (in reverse order)
[2026-04-10 14:17:43] 2026-04-10 12:16:56,566 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 14:17:43] 2026-04-10 12:16:56,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 14:17:43] 2026-04-10 12:16:56,587 | INFO     | did not find any defunct processes belonging to 3450135
[2026-04-10 14:17:43] 2026-04-10 12:16:56,600 | INFO     | did not find any defunct processes belonging to 3450135
[2026-04-10 14:17:43] 2026-04-10 12:16:56,601 | INFO     | Ready for new job
[2026-04-10 14:17:43] 2026-04-10 12:16:56,603 | INFO     | **************************************
[2026-04-10 14:17:43] 2026-04-10 12:16:56,603 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 14:17:43] 2026-04-10 12:16:56,603 | INFO     | **************************************
[2026-04-10 14:17:43] 2026-04-10 12:16:56,603 | INFO     | 
[2026-04-10 14:17:43] 2026-04-10 12:16:56,611 | INFO     | architecture information:
[2026-04-10 14:17:43] 2026-04-10 12:16:56,613 | INFO     | executing command: cat /etc/os-release
[2026-04-10 14:17:43] 2026-04-10 12:16:56,668 | INFO     | cat /etc/os-release:
[2026-04-10 14:17:43] NAME="CentOS Linux"
[2026-04-10 14:17:43] VERSION="7 (Core)"
[2026-04-10 14:17:43] ID="centos"
[2026-04-10 14:17:43] ID_LIKE="rhel fedora"
[2026-04-10 14:17:43] VERSION_ID="7"
[2026-04-10 14:17:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 14:17:43] ANSI_COLOR="0;31"
[2026-04-10 14:17:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 14:17:43] HOME_URL="https://www.centos.org/"
[2026-04-10 14:17:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 14:17:43] 
[2026-04-10 14:17:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 14:17:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 14:17:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 14:17:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 14:17:43] 
[2026-04-10 14:17:43] 2026-04-10 12:16:56,669 | INFO     | **************************************
[2026-04-10 14:17:43] 2026-04-10 12:16:57,171 | INFO     | executing command: df -mP /var/lib/boinc/var/slot64/slots/0
[2026-04-10 14:17:43] 2026-04-10 12:16:57,193 | INFO     | sufficient remaining disk space (30360469504 B)
[2026-04-10 14:17:43] 2026-04-10 12:16:57,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 14:17:43] 2026-04-10 12:16:57,194 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 14:17:43] 2026-04-10 12:16:57,194 | INFO     | update_server=False
[2026-04-10 14:17:43] 2026-04-10 12:16:57,194 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 14:17:43] 2026-04-10 12:16:57,416 | INFO     | all payload control threads have been joined
[2026-04-10 14:17:43] 2026-04-10 12:16:57,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 14:17:43] 2026-04-10 12:16:57,518 | INFO     | aborting loop
[2026-04-10 14:17:43] 2026-04-10 12:16:57,704 | INFO     | all data control threads have been joined
[2026-04-10 14:17:43] 2026-04-10 12:16:57,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 14:17:43] 2026-04-10 12:16:57,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 14:17:43] 2026-04-10 12:16:58,196 | INFO     | [job] retrieve thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,421 | INFO     | [payload] control thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,465 | INFO     | [job] validate thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,523 | INFO     | [job] job monitor thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,587 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,610 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,645 | INFO     | all job control threads have been joined
[2026-04-10 14:17:43] 2026-04-10 12:16:58,692 | INFO     | [payload] failed_post thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,709 | INFO     | [data] control thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:58,863 | INFO     | [payload] validate_post thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:59,136 | INFO     | [data] copytool_in thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:59,650 | INFO     | [job] control thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:59,670 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:59,909 | INFO     | [data] copytool_out thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:16:59,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 14:17:43] 2026-04-10 12:17:00,978 | INFO     | [job] queue monitor thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:17:01,917 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:17:07,419 | INFO     | job.realtimelogging is not enabled
[2026-04-10 14:17:43] 2026-04-10 12:17:08,424 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 14:17:43] 2026-04-10 12:17:26,776 | INFO     | PID=3445093 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-10 14:17:43] 2026-04-10 12:17:26,776 | INFO     | .. there are 12 such processes running
[2026-04-10 14:17:43] 2026-04-10 12:17:26,776 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 14:17:43] 2026-04-10 12:17:26,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 14:17:43] 2026-04-10 12:17:26,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 14:17:43] 2026-04-10 12:17:36,569 | INFO     | [monitor] cgroup control has ended
[2026-04-10 14:17:43] 2026-04-10 12:17:37,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23109481715520)>', '<ExcThread(monitor, started 23109246928640)>']
[2026-04-10 14:17:43] 2026-04-10 12:17:37,831 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 14:17:43] 2026-04-10 12:17:37,831 | INFO     | [monitor] control thread has ended
[2026-04-10 14:17:43] 2026-04-10 12:17:42,731 | INFO     | all workflow threads have been joined
[2026-04-10 14:17:43] 2026-04-10 12:17:42,731 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 14:17:43] 2026-04-10 12:17:42,731 | INFO     | traces error code: 0
[2026-04-10 14:17:43] 2026-04-10 12:17:42,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 14:17:43] 2026-04-10 12:17:42,884 [wrapper] ==== pilot stdout END ====
[2026-04-10 14:17:43] 2026-04-10 12:17:42,887 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 14:17:43] 2026-04-10 12:17:42,890 [wrapper] pilotpid: 3445093
[2026-04-10 14:17:43] 2026-04-10 12:17:42,893 [wrapper] Pilot exit status: 0
[2026-04-10 14:17:43] 2026-04-10 12:17:42,914 [wrapper] pandaids: 7072090068
[2026-04-10 14:17:43] 2026-04-10 12:17:43,003 [wrapper] cleanup supervisor_pilot 3660605 3445094
[2026-04-10 14:17:43] 2026-04-10 12:17:43,006 [wrapper] Test setup, not cleaning
[2026-04-10 14:17:43] 2026-04-10 12:17:43,010 [wrapper] apfmon messages muted
[2026-04-10 14:17:43] 2026-04-10 12:17:43,015 [wrapper] ==== wrapper stdout END ====
[2026-04-10 14:17:43] 2026-04-10 12:17:43,018 [wrapper] ==== wrapper stderr END ====
[2026-04-10 14:17:43]  *** Error codes and diagnostics ***
[2026-04-10 14:17:43]     "exeErrorCode": 0,
[2026-04-10 14:17:43]     "pilotErrorCode": 0,
[2026-04-10 14:17:43]  *** Listing of results directory ***
[2026-04-10 14:17:43] total 419532
[2026-04-10 14:17:43] -rwx------. 1 boinc boinc     36322 Apr  9 19:45 runpilot2-wrapper.sh
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc    644190 Apr  9 19:56 pilot3.tar.gz
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc      5094 Apr  9 20:09 queuedata.json
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc       100 Apr 10 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 14:17:43] -rwxr-xr-x. 1 boinc boinc      7986 Apr 10 10:49 run_atlas
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc       105 Apr 10 10:49 job.xml
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc      6480 Apr 10 10:49 init_data.xml
[2026-04-10 14:17:43] -rw-r--r--. 2 boinc boinc 224593375 Apr 10 10:49 EVNT.49263206._000326.pool.root.1
[2026-04-10 14:17:43] -rw-r--r--. 2 boinc boinc     15665 Apr 10 10:49 start_atlas.sh
[2026-04-10 14:17:43] drwxrwx--x. 2 boinc boinc      4096 Apr 10 10:49 shared
[2026-04-10 14:17:43] -rw-r--r--. 2 boinc boinc    656919 Apr 10 10:49 input.tar.gz
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc         0 Apr 10 10:49 boinc_lockfile
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc      2570 Apr 10 10:49 pandaJob.out
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc    997876 Apr 10 10:50 agis_schedconf.cvmfs.json
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc       452 Apr 10 10:50 workernode_map.json
[2026-04-10 14:17:43] drwx------. 5 boinc boinc      4096 Apr 10 10:50 pilot3
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc 198052640 Apr 10 14:16 HITS.49263208._006901.pool.root.1
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc       488 Apr 10 14:16 boinc_task_state.xml
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc        95 Apr 10 14:16 pilot_heartbeat.json
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc      1034 Apr 10 14:16 memory_monitor_summary.json
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc   1511579 Apr 10 14:16 agis_ddmendpoints.agis.ALL.json
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc    303021 Apr 10 14:16 log.49263208._006901.job.log.tgz.1
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc      6420 Apr 10 14:16 heartbeat_new.json
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc      6311 Apr 10 14:16 heartbeat.json
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc        28 Apr 10 14:17 wrapper_checkpoint.txt
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc      4900 Apr 10 14:17 pilotlog.txt
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc   1148884 Apr 10 14:17 log.49263208._006901.job.log.1
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc       357 Apr 10 14:17 output.list
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc       410 Apr 10 14:17 runtime_log
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc   1464320 Apr 10 14:17 result.tar.gz
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc      8192 Apr 10 14:17 boinc_mmap_file
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc      8827 Apr 10 14:17 runtime_log.err
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc       665 Apr 10 14:17 e5ab1afef065.diag
[2026-04-10 14:17:43] -rw-r--r--. 1 boinc boinc     21063 Apr 10 14:17 stderr.txt
[2026-04-10 14:17:43] HITS file was successfully produced:
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc 198052640 Apr 10 14:16 shared/HITS.pool.root.1
[2026-04-10 14:17:43]  *** Contents of shared directory: ***
[2026-04-10 14:17:43] total 414840
[2026-04-10 14:17:43] -rw-r--r--. 2 boinc boinc 224593375 Apr 10 10:49 ATLAS.root_0
[2026-04-10 14:17:43] -rw-r--r--. 2 boinc boinc     15665 Apr 10 10:49 start_atlas.sh
[2026-04-10 14:17:43] -rw-r--r--. 2 boinc boinc    656919 Apr 10 10:49 input.tar.gz
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc 198052640 Apr 10 14:16 HITS.pool.root.1
[2026-04-10 14:17:43] -rw-------. 1 boinc boinc   1464320 Apr 10 14:17 result.tar.gz
14:17:45 (3440696): run_atlas exited; CPU time 46477.311123
14:17:45 (3440696): called boinc_finish(0)

</stderr_txt>
]]>

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