Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:11 (5765): wrapper (7.7.26015): starting
05:39:11 (5765): wrapper: running run_atlas (--nthreads 8)
[2026-04-10 05:39:11] Arguments: --nthreads 8
[2026-04-10 05:39:11] Threads: 8
[2026-04-10 05:39:11] Checking for CVMFS
[2026-04-10 05:39:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-10 05:39:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-10 05:39:14] Running cvmfs_config stat atlas.cern.ch
[2026-04-10 05:39:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-10 05:39:15] 2.11.2.0 4392 12345 98428 158284 3 54 20537133 25165824 4688 130560 0 3903170 99.944 1149653 5785 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-10 05:39:15] CVMFS is ok
[2026-04-10 05:39:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-10 05:39:15] Checking for apptainer binary...
[2026-04-10 05:39:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-10 05:39:15] Running /usr/bin/apptainer --version
[2026-04-10 05:39:15] apptainer version 1.3.2-1.el7
[2026-04-10 05:39:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-10 05:39:20] cg-vwn449.simple-grid.lan
[2026-04-10 05:39:20] apptainer works
[2026-04-10 05:39:20] Set ATHENA_PROC_NUMBER=8
[2026-04-10 05:39:20] Set ATHENA_CORE_NUMBER=8
[2026-04-10 05:39:20] Starting ATLAS job with PandaID=7069364782
[2026-04-10 05:39:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-10 11:22:46]  *** The last 200 lines of the pilot log: ***
[2026-04-10 11:22:46] 2026-04-10 09:21:42,392 | INFO     | this job has now completed (state=finished)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,392 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,392 | INFO     | log transfer has been attempted: DONE
[2026-04-10 11:22:46] 2026-04-10 09:21:42,392 | INFO     | job 7069364782 has finished - writing final server update
[2026-04-10 11:22:46] 2026-04-10 09:21:42,393 | INFO     | total number of processed events: 400 (read)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,395 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7069364782/memory_monitor_summary.json (trf name=prmon)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,396 | INFO     | extracted standard info from prmon json
[2026-04-10 11:22:46] 2026-04-10 09:21:42,396 | INFO     | extracted standard memory fields from prmon json
[2026-04-10 11:22:46] 2026-04-10 09:21:42,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-10 11:22:46] 2026-04-10 09:21:42,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-10 11:22:46] 2026-04-10 09:21:42,404 | INFO     | fitting pss+swap vs Time
[2026-04-10 11:22:46] 2026-04-10 09:21:42,405 | INFO     | sum of square deviations: 10743038637.5
[2026-04-10 11:22:46] 2026-04-10 09:21:42,408 | INFO     | sum of deviations: 187484114270.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,409 | INFO     | mean x (centered): 0.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,409 | INFO     | mean y: 2432878.699386503
[2026-04-10 11:22:46] 2026-04-10 09:21:42,409 | INFO     | intersect: 2432878.699386503
[2026-04-10 11:22:46] 2026-04-10 09:21:42,413 | INFO     | chi2: 7.714688148930384
[2026-04-10 11:22:46] 2026-04-10 09:21:42,414 | INFO     | sum of square deviations: 10256266720.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,417 | INFO     | sum of deviations: 205834100658.99997
[2026-04-10 11:22:46] 2026-04-10 09:21:42,418 | INFO     | mean x (centered): 0.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,418 | INFO     | mean y: 2438542.8753894083
[2026-04-10 11:22:46] 2026-04-10 09:21:42,418 | INFO     | intersect: 2438542.8753894083
[2026-04-10 11:22:46] 2026-04-10 09:21:42,419 | INFO     | chi2: 6.982630653999988
[2026-04-10 11:22:46] 2026-04-10 09:21:42,419 | INFO     | current chi2=6.982630653999988 (change=9.489139169311644 %)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,419 | INFO     | right removable region: 320
[2026-04-10 11:22:46] 2026-04-10 09:21:42,420 | INFO     | sum of square deviations: 10256266720.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,423 | INFO     | sum of deviations: 71645201743.99998
[2026-04-10 11:22:46] 2026-04-10 09:21:42,424 | INFO     | mean x (centered): 0.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,424 | INFO     | mean y: 2469156.1028037383
[2026-04-10 11:22:46] 2026-04-10 09:21:42,424 | INFO     | intersect: 2469156.1028037383
[2026-04-10 11:22:46] 2026-04-10 09:21:42,425 | INFO     | chi2: 2.7181922598951935
[2026-04-10 11:22:46] 2026-04-10 09:21:42,425 | INFO     | current chi2=2.7181922598951935 (change=64.76601247618724 %)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,426 | INFO     | sum of square deviations: 9784425315.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,429 | INFO     | sum of deviations: 2155083914.499996
[2026-04-10 11:22:46] 2026-04-10 09:21:42,429 | INFO     | mean x (centered): 0.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,430 | INFO     | mean y: 2491546.5537974685
[2026-04-10 11:22:46] 2026-04-10 09:21:42,430 | INFO     | intersect: 2491546.5537974685
[2026-04-10 11:22:46] 2026-04-10 09:21:42,430 | INFO     | chi2: 0.8279292476870421
[2026-04-10 11:22:46] 2026-04-10 09:21:42,431 | INFO     | current chi2=0.8279292476870421 (change=69.54118147187407 %)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,431 | INFO     | sum of square deviations: 9327281860.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,438 | INFO     | sum of deviations: -4690204295.000002
[2026-04-10 11:22:46] 2026-04-10 09:21:42,438 | INFO     | mean x (centered): 0.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,438 | INFO     | mean y: 2493818.4372990355
[2026-04-10 11:22:46] 2026-04-10 09:21:42,438 | INFO     | intersect: 2493818.4372990355
[2026-04-10 11:22:46] 2026-04-10 09:21:42,439 | INFO     | chi2: 0.8063320398252003
[2026-04-10 11:22:46] 2026-04-10 09:21:42,439 | INFO     | current chi2=0.8063320398252003 (change=2.608581339791681 %)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,439 | INFO     | left removable region: 15
[2026-04-10 11:22:46] 2026-04-10 09:21:42,440 | INFO     | sum of square deviations: 8797783560.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,443 | INFO     | sum of deviations: 15565925709.999994
[2026-04-10 11:22:46] 2026-04-10 09:21:42,444 | INFO     | mean x (centered): 0.0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,444 | INFO     | mean y: 2500702.531147541
[2026-04-10 11:22:46] 2026-04-10 09:21:42,444 | INFO     | intersect: 2500702.531147541
[2026-04-10 11:22:46] 2026-04-10 09:21:42,445 | INFO     | chi2: 0.014217944616992637
[2026-04-10 11:22:46] 2026-04-10 09:21:42,445 | INFO     | current memory leak: 1.77 B/s (using 305 data points, chi2=0.01)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | ..............................
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | . Timing measurements:
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | . get job = 0 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | . initial setup = 105 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | . payload setup = 181 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | . stage-in = 0 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,446 | INFO     | . payload execution = 19994 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,447 | INFO     | . stage-out = 3 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,447 | INFO     | . log creation = 1 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,447 | INFO     | ..............................
[2026-04-10 11:22:46] 2026-04-10 09:21:42,603 | INFO     | 
[2026-04-10 11:22:46] 2026-04-10 09:21:42,603 | INFO     | job summary report
[2026-04-10 11:22:46] 2026-04-10 09:21:42,603 | INFO     | --------------------------------------------------
[2026-04-10 11:22:46] 2026-04-10 09:21:42,603 | INFO     | PanDA job id: 7069364782
[2026-04-10 11:22:46] 2026-04-10 09:21:42,603 | INFO     | task id: 48967094
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | errors: (none)
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | pilot state: finished 
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | transexitcode: 0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | exeerrorcode: 0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | exeerrordiag: 
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | exitcode: 0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | exitmsg: OK
[2026-04-10 11:22:46] 2026-04-10 09:21:42,604 | INFO     | cpuconsumptiontime: 76979 s
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | nevents: 400
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | neventsw: 0
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | pid: 14400
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | pgrp: 14400
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | corecount: 8
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | event service: False
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | sizes: {0: 2279645, 1: 2249293, 2: 2281474, 12: 2281502, 20179: 2314764, 20180: 2314763, 20184: 2323945, 20186: 2324001, 20188: 2324195}
[2026-04-10 11:22:46] 2026-04-10 09:21:42,605 | INFO     | --------------------------------------------------
[2026-04-10 11:22:46] 2026-04-10 09:21:42,606 | INFO     | 
[2026-04-10 11:22:46] 2026-04-10 09:21:42,606 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-04-10 11:22:46] 2026-04-10 09:21:43,143 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-10 11:22:46] 2026-04-10 09:21:43,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-10 11:22:46] 2026-04-10 09:21:43,146 | INFO     | job 7069364782 has completed (purged errors)
[2026-04-10 11:22:46] 2026-04-10 09:21:43,146 | INFO     | overall cleanup function is called
[2026-04-10 11:22:46] 2026-04-10 09:21:44,156 | INFO     | --- collectZombieJob: --- 10, [14400]
[2026-04-10 11:22:46] 2026-04-10 09:21:44,156 | INFO     | zombie collector waiting for pid 14400
[2026-04-10 11:22:46] 2026-04-10 09:21:44,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-10 11:22:46] 2026-04-10 09:21:44,156 | INFO     | collected zombie processes
[2026-04-10 11:22:46] 2026-04-10 09:21:44,156 | INFO     | will attempt to kill all subprocesses of pid=14400
[2026-04-10 11:22:46] 2026-04-10 09:21:44,308 | INFO     | process IDs to be killed: [14400] (in reverse order)
[2026-04-10 11:22:46] 2026-04-10 09:21:45,224 | WARNING  | found no corresponding commands to process id(s)
[2026-04-10 11:22:46] 2026-04-10 09:21:45,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-10 11:22:46] 2026-04-10 09:21:45,228 | INFO     | did not find any defunct processes belonging to 14400
[2026-04-10 11:22:46] 2026-04-10 09:21:45,232 | INFO     | did not find any defunct processes belonging to 14400
[2026-04-10 11:22:46] 2026-04-10 09:21:45,232 | INFO     | Ready for new job
[2026-04-10 11:22:46] 2026-04-10 09:21:45,234 | INFO     | **************************************
[2026-04-10 11:22:46] 2026-04-10 09:21:45,235 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-10 11:22:46] 2026-04-10 09:21:45,235 | INFO     | **************************************
[2026-04-10 11:22:46] 2026-04-10 09:21:45,235 | INFO     | 
[2026-04-10 11:22:46] 2026-04-10 09:21:45,235 | INFO     | pilot is running in a VM
[2026-04-10 11:22:46] 2026-04-10 09:21:45,236 | INFO     | architecture information:
[2026-04-10 11:22:46] 2026-04-10 09:21:45,241 | INFO     | executing command: cat /etc/os-release
[2026-04-10 11:22:46] 2026-04-10 09:21:45,420 | INFO     | cat /etc/os-release:
[2026-04-10 11:22:46] NAME="CentOS Linux"
[2026-04-10 11:22:46] VERSION="7 (Core)"
[2026-04-10 11:22:46] ID="centos"
[2026-04-10 11:22:46] ID_LIKE="rhel fedora"
[2026-04-10 11:22:46] VERSION_ID="7"
[2026-04-10 11:22:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-10 11:22:46] ANSI_COLOR="0;31"
[2026-04-10 11:22:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-10 11:22:46] HOME_URL="https://www.centos.org/"
[2026-04-10 11:22:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-10 11:22:46] 
[2026-04-10 11:22:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-10 11:22:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-10 11:22:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-10 11:22:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-10 11:22:46] 
[2026-04-10 11:22:46] 2026-04-10 09:21:45,421 | INFO     | **************************************
[2026-04-10 11:22:46] 2026-04-10 09:21:45,926 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-04-10 11:22:46] 2026-04-10 09:21:46,077 | INFO     | sufficient remaining disk space (496550019072 B)
[2026-04-10 11:22:46] 2026-04-10 09:21:46,078 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-10 11:22:46] 2026-04-10 09:21:46,078 | INFO     | current server update state: UPDATING_FINAL
[2026-04-10 11:22:46] 2026-04-10 09:21:46,078 | INFO     | update_server=False
[2026-04-10 11:22:46] 2026-04-10 09:21:46,078 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-10 11:22:46] 2026-04-10 09:21:46,079 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-10 11:22:46] 2026-04-10 09:21:46,079 | INFO     | aborting loop
[2026-04-10 11:22:46] 2026-04-10 09:21:46,630 | INFO     | all job control threads have been joined
[2026-04-10 11:22:46] 2026-04-10 09:21:46,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-10 11:22:46] 2026-04-10 09:21:46,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-10 11:22:46] 2026-04-10 09:21:47,084 | INFO     | [job] retrieve thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:47,085 | INFO     | [job] job monitor thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:47,135 | INFO     | all payload control threads have been joined
[2026-04-10 11:22:46] 2026-04-10 09:21:47,167 | INFO     | all data control threads have been joined
[2026-04-10 11:22:46] 2026-04-10 09:21:47,355 | INFO     | [job] create_data_payload thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:47,523 | INFO     | [payload] execute_payloads thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:47,636 | INFO     | [job] control thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:47,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-10 11:22:46] 2026-04-10 09:21:47,665 | INFO     | [payload] validate_pre thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:47,824 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,141 | INFO     | [payload] control thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,173 | INFO     | [data] control thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,350 | INFO     | [job] validate thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,421 | INFO     | [payload] failed_post thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,451 | INFO     | [data] copytool_in thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,553 | INFO     | [payload] validate_post thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,646 | INFO     | [job] queue monitor thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:48,796 | INFO     | [data] copytool_out thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:21:50,819 | INFO     | [data] queue_monitor thread has finished
[2026-04-10 11:22:46] 2026-04-10 09:22:14,375 | INFO     | PID=9870 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-10 11:22:46] 2026-04-10 09:22:14,375 | INFO     | .. there are 9 such processes running
[2026-04-10 11:22:46] 2026-04-10 09:22:14,376 | INFO     | found 0 job(s) in 20 queues
[2026-04-10 11:22:46] 2026-04-10 09:22:14,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-10 11:22:46] 2026-04-10 09:22:14,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-10 11:22:46] 2026-04-10 09:22:36,506 | INFO     | [monitor] cgroup control has ended
[2026-04-10 11:22:46] 2026-04-10 09:22:37,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638181263168)>', '<ExcThread(monitor, started 140637278033664)>']
[2026-04-10 11:22:46] 2026-04-10 09:22:38,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-10 11:22:46] 2026-04-10 09:22:38,520 | INFO     | [monitor] control thread has ended
[2026-04-10 11:22:46] 2026-04-10 09:22:43,013 | INFO     | all workflow threads have been joined
[2026-04-10 11:22:46] 2026-04-10 09:22:43,013 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-10 11:22:46] 2026-04-10 09:22:43,013 | INFO     | traces error code: 0
[2026-04-10 11:22:46] 2026-04-10 09:22:43,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-10 11:22:46] 2026-04-10 09:22:43,307 [wrapper] ==== pilot stdout END ====
[2026-04-10 11:22:46] 2026-04-10 09:22:43,373 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-10 11:22:46] 2026-04-10 09:22:43,445 [wrapper] pilotpid: 9870
[2026-04-10 11:22:46] 2026-04-10 09:22:43,523 [wrapper] Pilot exit status: 0
[2026-04-10 11:22:46] 2026-04-10 09:22:43,881 [wrapper] pandaids: 7069364782
[2026-04-10 11:22:46] 2026-04-10 09:22:44,222 [wrapper] cleanup supervisor_pilot 23923 9871
[2026-04-10 11:22:46] 2026-04-10 09:22:44,257 [wrapper] Test setup, not cleaning
[2026-04-10 11:22:46] 2026-04-10 09:22:44,297 [wrapper] apfmon messages muted
[2026-04-10 11:22:46] 2026-04-10 09:22:44,362 [wrapper] ==== wrapper stdout END ====
[2026-04-10 11:22:46] 2026-04-10 09:22:44,423 [wrapper] ==== wrapper stderr END ====
[2026-04-10 11:22:46]  *** Error codes and diagnostics ***
[2026-04-10 11:22:46]     "exeErrorCode": 0,
[2026-04-10 11:22:46]     "pilotErrorCode": 0,
[2026-04-10 11:22:46]  *** Listing of results directory ***
[2026-04-10 11:22:46] total 430128
[2026-04-10 11:22:46] -rwx------. 1 boinc boinc     36322 Apr  9 19:44 runpilot2-wrapper.sh
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc    644190 Apr  9 19:48 pilot3.tar.gz
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc      5094 Apr  9 19:56 queuedata.json
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc       100 Apr 10 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-10 11:22:46] -rwxr-xr-x. 1 boinc boinc      7986 Apr 10 05:39 run_atlas
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc       105 Apr 10 05:39 job.xml
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc      6306 Apr 10 05:39 init_data.xml
[2026-04-10 11:22:46] -rw-r--r--. 2 boinc boinc 221882086 Apr 10 05:39 EVNT.48967092._000528.pool.root.1
[2026-04-10 11:22:46] -rw-r--r--. 2 boinc boinc     15665 Apr 10 05:39 start_atlas.sh
[2026-04-10 11:22:46] drwxrwx--x. 2 boinc boinc        68 Apr 10 05:39 shared
[2026-04-10 11:22:46] -rw-r--r--. 2 boinc boinc    656938 Apr 10 05:39 input.tar.gz
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc         0 Apr 10 05:39 boinc_lockfile
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc      2601 Apr 10 05:39 pandaJob.out
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc       415 Apr 10 05:44 workernode_map.json
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc    997884 Apr 10 05:45 agis_schedconf.cvmfs.json
[2026-04-10 11:22:46] drwx------. 5 boinc boinc      4096 Apr 10 05:45 pilot3
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc 209947510 Apr 10 11:20 HITS.48967094._016957.pool.root.1
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc       489 Apr 10 11:20 boinc_task_state.xml
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc      1012 Apr 10 11:21 memory_monitor_summary.json
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc   1511579 Apr 10 11:21 agis_ddmendpoints.agis.ALL.json
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc    440730 Apr 10 11:21 log.48967094._016957.job.log.tgz.1
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc      6334 Apr 10 11:21 heartbeat_new.json
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc      6225 Apr 10 11:21 heartbeat.json
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc        95 Apr 10 11:22 pilot_heartbeat.json
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc        28 Apr 10 11:22 wrapper_checkpoint.txt
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc      8192 Apr 10 11:22 boinc_mmap_file
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc      4878 Apr 10 11:22 pilotlog.txt
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc   1847870 Apr 10 11:22 log.48967094._016957.job.log.1
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc       357 Apr 10 11:22 output.list
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc       410 Apr 10 11:22 runtime_log
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc   2304000 Apr 10 11:22 result.tar.gz
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc      8438 Apr 10 11:22 runtime_log.err
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc       656 Apr 10 11:22 e560e9771c8f.diag
[2026-04-10 11:22:46] -rw-r--r--. 1 boinc boinc     20656 Apr 10 11:22 stderr.txt
[2026-04-10 11:22:46] HITS file was successfully produced:
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc 209947510 Apr 10 11:20 shared/HITS.pool.root.1
[2026-04-10 11:22:46]  *** Contents of shared directory: ***
[2026-04-10 11:22:46] total 424624
[2026-04-10 11:22:46] -rw-r--r--. 2 boinc boinc 221882086 Apr 10 05:39 ATLAS.root_0
[2026-04-10 11:22:46] -rw-r--r--. 2 boinc boinc     15665 Apr 10 05:39 start_atlas.sh
[2026-04-10 11:22:46] -rw-r--r--. 2 boinc boinc    656938 Apr 10 05:39 input.tar.gz
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc 209947510 Apr 10 11:20 HITS.pool.root.1
[2026-04-10 11:22:46] -rw-------. 1 boinc boinc   2304000 Apr 10 11:22 result.tar.gz
11:22:48 (5765): run_atlas exited; CPU time 77318.327682
11:22:48 (5765): called boinc_finish(0)

</stderr_txt>
]]>

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