Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:04:06 (23781): wrapper (7.7.26015): starting
19:04:06 (23781): wrapper: running run_atlas (--nthreads 8)
[2026-04-08 19:04:06] Arguments: --nthreads 8
[2026-04-08 19:04:06] Threads: 8
[2026-04-08 19:04:06] Checking for CVMFS
[2026-04-08 19:04:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-08 19:04:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-08 19:04:07] Running cvmfs_config stat atlas.cern.ch
[2026-04-08 19:04:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-08 19:04:07] 2.11.2.0 2483 10285 80888 158226 3 77 18164240 25165824 94 130560 0 5004057 99.913 1550763 8009 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-08 19:04:07] CVMFS is ok
[2026-04-08 19:04:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-08 19:04:07] Checking for apptainer binary...
[2026-04-08 19:04:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-08 19:04:07] Running /usr/bin/apptainer --version
[2026-04-08 19:04:07] apptainer version 1.3.2-1.el7
[2026-04-08 19:04:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-08 19:04:08] cg-vwn427.simple-grid.lan
[2026-04-08 19:04:08] apptainer works
[2026-04-08 19:04:08] Set ATHENA_PROC_NUMBER=8
[2026-04-08 19:04:08] Set ATHENA_CORE_NUMBER=8
[2026-04-08 19:04:08] Starting ATLAS job with PandaID=7074591666
[2026-04-08 19:04:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-08 22:41:05]  *** The last 200 lines of the pilot log: ***
[2026-04-08 22:41:05] 2026-04-08 20:40:09,556 | INFO     | this job has now completed (state=finished)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,557 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,557 | INFO     | log transfer has been attempted: DONE
[2026-04-08 22:41:05] 2026-04-08 20:40:09,557 | INFO     | job 7074591666 has finished - writing final server update
[2026-04-08 22:41:05] 2026-04-08 20:40:09,557 | INFO     | total number of processed events: 400 (read)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,560 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-7074591666/memory_monitor_summary.json (trf name=prmon)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,560 | INFO     | extracted standard info from prmon json
[2026-04-08 22:41:05] 2026-04-08 20:40:09,561 | INFO     | extracted standard memory fields from prmon json
[2026-04-08 22:41:05] 2026-04-08 20:40:09,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-08 22:41:05] 2026-04-08 20:40:09,561 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-08 22:41:05] 2026-04-08 20:40:09,566 | INFO     | fitting pss+swap vs Time
[2026-04-08 22:41:05] 2026-04-08 20:40:09,567 | INFO     | sum of square deviations: 2954447953.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,569 | INFO     | sum of deviations: 14067347585.499998
[2026-04-08 22:41:05] 2026-04-08 20:40:09,569 | INFO     | mean x (centered): 0.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,569 | INFO     | mean y: 2472179.1745283017
[2026-04-08 22:41:05] 2026-04-08 20:40:09,570 | INFO     | intersect: 2472179.1745283017
[2026-04-08 22:41:05] 2026-04-08 20:40:09,570 | INFO     | chi2: 2.255031400825324
[2026-04-08 22:41:05] 2026-04-08 20:40:09,571 | INFO     | sum of square deviations: 2750295288.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,572 | INFO     | sum of deviations: 27404674316.000004
[2026-04-08 22:41:05] 2026-04-08 20:40:09,573 | INFO     | mean x (centered): 0.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,573 | INFO     | mean y: 2481942.797101449
[2026-04-08 22:41:05] 2026-04-08 20:40:09,573 | INFO     | intersect: 2481942.797101449
[2026-04-08 22:41:05] 2026-04-08 20:40:09,573 | INFO     | chi2: 1.482696242889782
[2026-04-08 22:41:05] 2026-04-08 20:40:09,574 | INFO     | current chi2=1.482696242889782 (change=34.24941921664031 %)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,574 | INFO     | sum of square deviations: 2555770710.5
[2026-04-08 22:41:05] 2026-04-08 20:40:09,576 | INFO     | sum of deviations: 26612886020.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,576 | INFO     | mean x (centered): 0.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,576 | INFO     | mean y: 2481321.9504950494
[2026-04-08 22:41:05] 2026-04-08 20:40:09,576 | INFO     | intersect: 2481321.9504950494
[2026-04-08 22:41:05] 2026-04-08 20:40:09,577 | INFO     | chi2: 1.4836361858763756
[2026-04-08 22:41:05] 2026-04-08 20:40:09,577 | INFO     | current chi2=1.4836361858763756 (change=-0.06339417066044135 %)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,577 | INFO     | right removable region: 201
[2026-04-08 22:41:05] 2026-04-08 20:40:09,578 | INFO     | sum of square deviations: 2750295288.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,579 | INFO     | sum of deviations: -16991372063.000004
[2026-04-08 22:41:05] 2026-04-08 20:40:09,580 | INFO     | mean x (centered): 0.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,580 | INFO     | mean y: 2495112.077294686
[2026-04-08 22:41:05] 2026-04-08 20:40:09,580 | INFO     | intersect: 2495112.077294686
[2026-04-08 22:41:05] 2026-04-08 20:40:09,580 | INFO     | chi2: 0.8345723549168597
[2026-04-08 22:41:05] 2026-04-08 20:40:09,581 | INFO     | current chi2=0.8345723549168597 (change=62.990654825852424 %)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,581 | INFO     | sum of square deviations: 2555770710.5
[2026-04-08 22:41:05] 2026-04-08 20:40:09,583 | INFO     | sum of deviations: -11850652542.5
[2026-04-08 22:41:05] 2026-04-08 20:40:09,583 | INFO     | mean x (centered): 0.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,583 | INFO     | mean y: 2491047.9851485146
[2026-04-08 22:41:05] 2026-04-08 20:40:09,583 | INFO     | intersect: 2491047.9851485146
[2026-04-08 22:41:05] 2026-04-08 20:40:09,584 | INFO     | chi2: 0.8053276161567645
[2026-04-08 22:41:05] 2026-04-08 20:40:09,584 | INFO     | current chi2=0.8053276161567645 (change=3.5041585774799016 %)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,584 | INFO     | left removable region: 10
[2026-04-08 22:41:05] 2026-04-08 20:40:09,585 | INFO     | sum of square deviations: 2160561440.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,586 | INFO     | sum of deviations: 1262886782.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,586 | INFO     | mean x (centered): 0.0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,587 | INFO     | mean y: 2501621.7853403143
[2026-04-08 22:41:05] 2026-04-08 20:40:09,587 | INFO     | intersect: 2501621.7853403143
[2026-04-08 22:41:05] 2026-04-08 20:40:09,587 | INFO     | chi2: 0.011652717642955104
[2026-04-08 22:41:05] 2026-04-08 20:40:09,587 | INFO     | current memory leak: 0.58 B/s (using 191 data points, chi2=0.01)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,588 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,588 | INFO     | ..............................
[2026-04-08 22:41:05] 2026-04-08 20:40:09,588 | INFO     | . Timing measurements:
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . get job = 0 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . initial setup = 7 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . payload setup = 14 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . stage-in = 0 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . payload execution = 12899 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . stage-out = 3 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | . log creation = 1 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,589 | INFO     | ..............................
[2026-04-08 22:41:05] 2026-04-08 20:40:09,993 | INFO     | 
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | job summary report
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | --------------------------------------------------
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | PanDA job id: 7074591666
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | task id: 49263208
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | errors: (none)
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-08 22:41:05] 2026-04-08 20:40:09,994 | INFO     | pilot state: finished 
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | transexitcode: 0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | exeerrorcode: 0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | exeerrordiag: 
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | exitcode: 0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | exitmsg: OK
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | cpuconsumptiontime: 53401 s
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | nevents: 400
[2026-04-08 22:41:05] 2026-04-08 20:40:09,995 | INFO     | neventsw: 0
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | pid: 32350
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | pgrp: 32350
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | corecount: 8
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | event service: False
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | sizes: {0: 2279775, 1: 2281547, 11: 2281547, 12918: 2311621, 12919: 2311620, 12924: 2320676, 12927: 2321054}
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | --------------------------------------------------
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | 
[2026-04-08 22:41:05] 2026-04-08 20:40:09,996 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-04-08 22:41:05] 2026-04-08 20:40:10,621 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,622 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,622 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,622 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | job 7074591666 has completed (purged errors)
[2026-04-08 22:41:05] 2026-04-08 20:40:10,624 | INFO     | overall cleanup function is called
[2026-04-08 22:41:05] 2026-04-08 20:40:11,633 | INFO     | --- collectZombieJob: --- 10, [32350]
[2026-04-08 22:41:05] 2026-04-08 20:40:11,634 | INFO     | zombie collector waiting for pid 32350
[2026-04-08 22:41:05] 2026-04-08 20:40:11,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-08 22:41:05] 2026-04-08 20:40:11,634 | INFO     | collected zombie processes
[2026-04-08 22:41:05] 2026-04-08 20:40:11,634 | INFO     | will attempt to kill all subprocesses of pid=32350
[2026-04-08 22:41:05] 2026-04-08 20:40:11,722 | INFO     | process IDs to be killed: [32350] (in reverse order)
[2026-04-08 22:41:05] 2026-04-08 20:40:12,547 | WARNING  | found no corresponding commands to process id(s)
[2026-04-08 22:41:05] 2026-04-08 20:40:12,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-08 22:41:05] 2026-04-08 20:40:12,557 | INFO     | did not find any defunct processes belonging to 32350
[2026-04-08 22:41:05] 2026-04-08 20:40:12,559 | INFO     | did not find any defunct processes belonging to 32350
[2026-04-08 22:41:05] 2026-04-08 20:40:12,560 | INFO     | Ready for new job
[2026-04-08 22:41:05] 2026-04-08 20:40:12,562 | INFO     | **************************************
[2026-04-08 22:41:05] 2026-04-08 20:40:12,562 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-08 22:41:05] 2026-04-08 20:40:12,562 | INFO     | **************************************
[2026-04-08 22:41:05] 2026-04-08 20:40:12,562 | INFO     | 
[2026-04-08 22:41:05] 2026-04-08 20:40:12,563 | INFO     | pilot is running in a VM
[2026-04-08 22:41:05] 2026-04-08 20:40:12,563 | INFO     | architecture information:
[2026-04-08 22:41:05] 2026-04-08 20:40:12,570 | INFO     | executing command: cat /etc/os-release
[2026-04-08 22:41:05] 2026-04-08 20:40:12,780 | INFO     | cat /etc/os-release:
[2026-04-08 22:41:05] NAME="CentOS Linux"
[2026-04-08 22:41:05] VERSION="7 (Core)"
[2026-04-08 22:41:05] ID="centos"
[2026-04-08 22:41:05] ID_LIKE="rhel fedora"
[2026-04-08 22:41:05] VERSION_ID="7"
[2026-04-08 22:41:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-08 22:41:05] ANSI_COLOR="0;31"
[2026-04-08 22:41:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-08 22:41:05] HOME_URL="https://www.centos.org/"
[2026-04-08 22:41:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-08 22:41:05] 
[2026-04-08 22:41:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-08 22:41:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-08 22:41:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-08 22:41:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-08 22:41:05] 
[2026-04-08 22:41:05] 2026-04-08 20:40:12,780 | INFO     | **************************************
[2026-04-08 22:41:05] 2026-04-08 20:40:13,284 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-04-08 22:41:05] 2026-04-08 20:40:13,613 | INFO     | sufficient remaining disk space (496110665728 B)
[2026-04-08 22:41:05] 2026-04-08 20:40:13,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-08 22:41:05] 2026-04-08 20:40:13,614 | INFO     | current server update state: UPDATING_FINAL
[2026-04-08 22:41:05] 2026-04-08 20:40:13,614 | INFO     | update_server=False
[2026-04-08 22:41:05] 2026-04-08 20:40:13,614 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-08 22:41:05] 2026-04-08 20:40:13,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-08 22:41:05] 2026-04-08 20:40:13,621 | INFO     | aborting loop
[2026-04-08 22:41:05] 2026-04-08 20:40:13,657 | INFO     | all data control threads have been joined
[2026-04-08 22:41:05] 2026-04-08 20:40:13,761 | INFO     | all job control threads have been joined
[2026-04-08 22:41:05] 2026-04-08 20:40:13,992 | INFO     | all payload control threads have been joined
[2026-04-08 22:41:05] 2026-04-08 20:40:14,620 | INFO     | [job] retrieve thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,627 | INFO     | [job] job monitor thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,664 | INFO     | [data] control thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,695 | INFO     | [job] validate thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-08 22:41:05] 2026-04-08 20:40:14,768 | INFO     | [job] control thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,779 | INFO     | [payload] failed_post thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,856 | INFO     | [job] create_data_payload thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:14,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-08 22:41:05] 2026-04-08 20:40:14,999 | INFO     | [payload] control thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:15,418 | INFO     | [payload] execute_payloads thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:15,480 | INFO     | [data] copytool_in thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:15,526 | INFO     | [payload] validate_post thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:15,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-08 22:41:05] 2026-04-08 20:40:15,757 | INFO     | [job] queue monitor thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:16,028 | INFO     | [payload] validate_pre thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:16,033 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:16,873 | INFO     | [data] copytool_out thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:19,575 | INFO     | [data] queue_monitor thread has finished
[2026-04-08 22:41:05] 2026-04-08 20:40:43,619 | INFO     | PID=27918 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-08 22:41:05] 2026-04-08 20:40:43,619 | INFO     | .. there are 2 such processes running
[2026-04-08 22:41:05] 2026-04-08 20:40:43,620 | INFO     | found 0 job(s) in 20 queues
[2026-04-08 22:41:05] 2026-04-08 20:40:43,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-08 22:41:05] 2026-04-08 20:40:43,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-08 22:41:05] 2026-04-08 20:40:52,828 | INFO     | [monitor] cgroup control has ended
[2026-04-08 22:41:05] 2026-04-08 20:40:54,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238320985920)>', '<ExcThread(monitor, started 140238022223616)>']
[2026-04-08 22:41:05] 2026-04-08 20:40:55,691 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-08 22:41:05] 2026-04-08 20:40:55,692 | INFO     | [monitor] control thread has ended
[2026-04-08 22:41:05] 2026-04-08 20:40:59,875 | INFO     | all workflow threads have been joined
[2026-04-08 22:41:05] 2026-04-08 20:40:59,876 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-08 22:41:05] 2026-04-08 20:40:59,876 | INFO     | traces error code: 0
[2026-04-08 22:41:05] 2026-04-08 20:40:59,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-08 22:41:05] 2026-04-08 20:41:00,264 [wrapper] ==== pilot stdout END ====
[2026-04-08 22:41:05] 2026-04-08 20:41:00,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-08 22:41:05] 2026-04-08 20:41:00,436 [wrapper] pilotpid: 27918
[2026-04-08 22:41:05] 2026-04-08 20:41:00,496 [wrapper] Pilot exit status: 0
[2026-04-08 22:41:05] 2026-04-08 20:41:00,995 [wrapper] pandaids: 7074591666
[2026-04-08 22:41:05] 2026-04-08 20:41:01,855 [wrapper] cleanup supervisor_pilot 21668 27919
[2026-04-08 22:41:05] 2026-04-08 20:41:01,922 [wrapper] Test setup, not cleaning
[2026-04-08 22:41:05] 2026-04-08 20:41:02,020 [wrapper] apfmon messages muted
[2026-04-08 22:41:05] 2026-04-08 20:41:02,108 [wrapper] ==== wrapper stdout END ====
[2026-04-08 22:41:05] 2026-04-08 20:41:02,217 [wrapper] ==== wrapper stderr END ====
[2026-04-08 22:41:05]  *** Error codes and diagnostics ***
[2026-04-08 22:41:05]     "exeErrorCode": 0,
[2026-04-08 22:41:05]     "pilotErrorCode": 0,
[2026-04-08 22:41:05]  *** Listing of results directory ***
[2026-04-08 22:41:05] total 409716
[2026-04-08 22:41:05] -rwx------. 1 boinc boinc     36322 Apr  6 23:58 runpilot2-wrapper.sh
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc    644190 Apr  8 19:00 pilot3.tar.gz
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc      5094 Apr  8 19:02 queuedata.json
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc       100 Apr  8 19:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-08 22:41:05] -rwxr-xr-x. 1 boinc boinc      7986 Apr  8 19:04 run_atlas
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc       105 Apr  8 19:04 job.xml
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc      6306 Apr  8 19:04 init_data.xml
[2026-04-08 22:41:05] -rw-r--r--. 2 boinc boinc 224286298 Apr  8 19:04 EVNT.49263206._000862.pool.root.1
[2026-04-08 22:41:05] -rw-r--r--. 2 boinc boinc     15665 Apr  8 19:04 start_atlas.sh
[2026-04-08 22:41:05] drwxrwx--x. 2 boinc boinc        68 Apr  8 19:04 shared
[2026-04-08 22:41:05] -rw-r--r--. 2 boinc boinc    656929 Apr  8 19:04 input.tar.gz
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc         0 Apr  8 19:04 boinc_lockfile
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc      2575 Apr  8 19:04 pandaJob.out
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc    997205 Apr  8 19:04 agis_schedconf.cvmfs.json
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc       415 Apr  8 19:04 workernode_map.json
[2026-04-08 22:41:05] drwx------. 5 boinc boinc      4096 Apr  8 19:04 pilot3
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc 187996330 Apr  8 22:38 HITS.49263208._021986.pool.root.1
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc       488 Apr  8 22:38 boinc_task_state.xml
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc      1020 Apr  8 22:39 memory_monitor_summary.json
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc   1511579 Apr  8 22:40 agis_ddmendpoints.agis.ALL.json
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc    398596 Apr  8 22:40 log.49263208._021986.job.log.tgz.1
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc      6339 Apr  8 22:40 heartbeat_new.json
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc      6230 Apr  8 22:40 heartbeat.json
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc        28 Apr  8 22:40 wrapper_checkpoint.txt
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc      8192 Apr  8 22:40 boinc_mmap_file
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc        95 Apr  8 22:40 pilot_heartbeat.json
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc      4880 Apr  8 22:40 pilotlog.txt
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc   1208682 Apr  8 22:41 log.49263208._021986.job.log.1
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc       357 Apr  8 22:41 output.list
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc       410 Apr  8 22:41 runtime_log
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc   1628160 Apr  8 22:41 result.tar.gz
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc      8454 Apr  8 22:41 runtime_log.err
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc       656 Apr  8 22:41 2c90ac5ab20d.diag
[2026-04-08 22:41:05] -rw-r--r--. 1 boinc boinc     20625 Apr  8 22:41 stderr.txt
[2026-04-08 22:41:05] HITS file was successfully produced:
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc 187996330 Apr  8 22:38 shared/HITS.pool.root.1
[2026-04-08 22:41:05]  *** Contents of shared directory: ***
[2026-04-08 22:41:05] total 404876
[2026-04-08 22:41:05] -rw-r--r--. 2 boinc boinc 224286298 Apr  8 19:04 ATLAS.root_0
[2026-04-08 22:41:05] -rw-r--r--. 2 boinc boinc     15665 Apr  8 19:04 start_atlas.sh
[2026-04-08 22:41:05] -rw-r--r--. 2 boinc boinc    656929 Apr  8 19:04 input.tar.gz
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc 187996330 Apr  8 22:38 HITS.pool.root.1
[2026-04-08 22:41:05] -rw-------. 1 boinc boinc   1628160 Apr  8 22:41 result.tar.gz
22:41:07 (23781): run_atlas exited; CPU time 53514.450552
22:41:07 (23781): called boinc_finish(0)

</stderr_txt>
]]>

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