Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:53 (1078909): wrapper (7.7.26015): starting
20:19:53 (1078909): wrapper: running run_atlas (--nthreads 3)
[2026-04-08 20:19:53] Arguments: --nthreads 3
[2026-04-08 20:19:53] Threads: 3
[2026-04-08 20:19:53] Checking for CVMFS
[2026-04-08 20:19:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-08 20:19:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-08 20:19:54] Running cvmfs_config stat atlas.cern.ch
[2026-04-08 20:19:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-08 20:19:54] 2.9.2.0 1064961 85 49968 158229 2 49 32548581 36864001 0 130560 0 54981 99.964 6925 15320 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-08 20:19:54] CVMFS is ok
[2026-04-08 20:19:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-08 20:19:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-08 20:19:54] Further information can be found at the LHC@home message board.
[2026-04-08 20:19:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-08 20:19:54] Checking for apptainer binary...
[2026-04-08 20:19:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-08 20:19:54] Running /usr/bin/apptainer --version
[2026-04-08 20:19:54] apptainer version 1.4.1-1.1
[2026-04-08 20:19:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-08 20:19:54] belleA253
[2026-04-08 20:19:54] apptainer works
[2026-04-08 20:19:54] Set ATHENA_PROC_NUMBER=3
[2026-04-08 20:19:54] Set ATHENA_CORE_NUMBER=3
[2026-04-08 20:19:54] Starting ATLAS job with PandaID=7082843571
[2026-04-08 20:19:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-08 23:05:23]  *** The last 200 lines of the pilot log: ***
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | job 7082843571 has completed (purged errors)
[2026-04-08 23:05:23] 2026-04-08 21:05:01,749 | INFO     | overall cleanup function is called
[2026-04-08 23:05:23] 2026-04-08 21:05:01,801 [wrapper] supervise_pilot (15 min periods counter: 12)
[2026-04-08 23:05:23] 2026-04-08 21:05:02,756 | INFO     | --- collectZombieJob: --- 10, [1087390]
[2026-04-08 23:05:23] 2026-04-08 21:05:02,756 | INFO     | zombie collector waiting for pid 1087390
[2026-04-08 23:05:23] 2026-04-08 21:05:02,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-08 23:05:23] 2026-04-08 21:05:02,757 | INFO     | collected zombie processes
[2026-04-08 23:05:23] 2026-04-08 21:05:02,757 | INFO     | will attempt to kill all subprocesses of pid=1087390
[2026-04-08 23:05:23] 2026-04-08 21:05:02,796 | INFO     | process IDs to be killed: [1087390] (in reverse order)
[2026-04-08 23:05:23] 2026-04-08 21:05:02,822 | WARNING  | found no corresponding commands to process id(s)
[2026-04-08 23:05:23] 2026-04-08 21:05:02,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-08 23:05:23] 2026-04-08 21:05:02,823 | INFO     | did not find any defunct processes belonging to 1087390
[2026-04-08 23:05:23] 2026-04-08 21:05:02,824 | INFO     | did not find any defunct processes belonging to 1087390
[2026-04-08 23:05:23] 2026-04-08 21:05:02,824 | INFO     | Ready for new job
[2026-04-08 23:05:23] 2026-04-08 21:05:02,825 | INFO     | **************************************
[2026-04-08 23:05:23] 2026-04-08 21:05:02,825 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-08 23:05:23] 2026-04-08 21:05:02,825 | INFO     | **************************************
[2026-04-08 23:05:23] 2026-04-08 21:05:02,825 | INFO     | 
[2026-04-08 23:05:23] 2026-04-08 21:05:02,826 | INFO     | architecture information:
[2026-04-08 23:05:23] 2026-04-08 21:05:02,826 | INFO     | executing command: cat /etc/os-release
[2026-04-08 23:05:23] 2026-04-08 21:05:02,835 | INFO     | cat /etc/os-release:
[2026-04-08 23:05:23] NAME="CentOS Linux"
[2026-04-08 23:05:23] VERSION="7 (Core)"
[2026-04-08 23:05:23] ID="centos"
[2026-04-08 23:05:23] ID_LIKE="rhel fedora"
[2026-04-08 23:05:23] VERSION_ID="7"
[2026-04-08 23:05:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-08 23:05:23] ANSI_COLOR="0;31"
[2026-04-08 23:05:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-08 23:05:23] HOME_URL="https://www.centos.org/"
[2026-04-08 23:05:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-08 23:05:23] 
[2026-04-08 23:05:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-08 23:05:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-08 23:05:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-08 23:05:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-08 23:05:23] 
[2026-04-08 23:05:23] 2026-04-08 21:05:02,835 | INFO     | **************************************
[2026-04-08 23:05:23] 2026-04-08 21:05:03,339 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-08 23:05:23] 2026-04-08 21:05:03,352 | INFO     | sufficient remaining disk space (373150449664 B)
[2026-04-08 23:05:23] 2026-04-08 21:05:03,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-08 23:05:23] 2026-04-08 21:05:03,352 | INFO     | current server update state: UPDATING_FINAL
[2026-04-08 23:05:23] 2026-04-08 21:05:03,352 | INFO     | update_server=False
[2026-04-08 23:05:23] 2026-04-08 21:05:03,352 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-08 23:05:23] 2026-04-08 21:05:03,352 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-08 23:05:23] 2026-04-08 21:05:03,353 | INFO     | found 0 job(s) in 20 queues
[2026-04-08 23:05:23] 2026-04-08 21:05:03,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-08 23:05:23] 2026-04-08 21:05:03,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-08 23:05:23] 2026-04-08 21:05:03,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-08 23:05:23] 2026-04-08 21:05:03,353 | INFO     | aborting loop
[2026-04-08 23:05:23] 2026-04-08 21:05:03,367 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-08 23:05:23] 2026-04-08 21:05:03,653 | INFO     | all payload control threads have been joined
[2026-04-08 23:05:23] 2026-04-08 21:05:03,857 | INFO     | all data control threads have been joined
[2026-04-08 23:05:23] 2026-04-08 21:05:04,358 | INFO     | [job] retrieve thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:04,358 | INFO     | [job] job monitor thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:04,398 | INFO     | [payload] validate_pre thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:04,465 | INFO     | [data] copytool_in thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:04,639 | INFO     | all job control threads have been joined
[2026-04-08 23:05:23] 2026-04-08 21:05:04,659 | INFO     | [payload] control thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:04,858 | INFO     | [data] control thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,357 | INFO     | [payload] failed_post thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,373 | INFO     | [data] copytool_out thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,405 | INFO     | [payload] execute_payloads thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,645 | INFO     | [job] control thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,674 | INFO     | [job] validate thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,835 | INFO     | [job] create_data_payload thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:05,864 | INFO     | [payload] validate_post thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:06,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-08 23:05:23] 2026-04-08 21:05:06,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-08 23:05:23] 2026-04-08 21:05:07,275 | INFO     | [job] queue monitor thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:10,545 | INFO     | [data] queue_monitor thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:13,996 | INFO     | job.realtimelogging is not enabled
[2026-04-08 23:05:23] 2026-04-08 21:05:15,001 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-08 23:05:23] 2026-04-08 21:05:17,596 | INFO     | [monitor] cgroup control has ended
[2026-04-08 23:05:23] 2026-04-08 21:05:17,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971139589952)>', '<ExcThread(monitor, started 139969897166592)>']
[2026-04-08 23:05:23] 2026-04-08 21:05:18,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-08 23:05:23] 2026-04-08 21:05:18,425 | INFO     | [monitor] control thread has ended
[2026-04-08 23:05:23] 2026-04-08 21:05:22,910 | INFO     | all workflow threads have been joined
[2026-04-08 23:05:23] 2026-04-08 21:05:22,910 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-08 23:05:23] 2026-04-08 21:05:22,910 | INFO     | traces error code: 0
[2026-04-08 23:05:23] 2026-04-08 21:05:22,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-08 23:05:23] 2026-04-08 21:05:22,962 [wrapper] ==== pilot stdout END ====
[2026-04-08 23:05:23] 2026-04-08 21:05:22,964 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-08 23:05:23] 2026-04-08 21:05:22,967 [wrapper] pilotpid: 1082963
[2026-04-08 23:05:23] 2026-04-08 21:05:22,969 [wrapper] Pilot exit status: 0
[2026-04-08 23:05:23] 2026-04-08 21:05:22,977 [wrapper] pandaids: 7082843571
[2026-04-08 23:05:23] 2026-04-08 21:05:22,994 [wrapper] cleanup supervisor_pilot 1094065 1082964
[2026-04-08 23:05:23] 2026-04-08 21:05:22,996 [wrapper] Test setup, not cleaning
[2026-04-08 23:05:23] 2026-04-08 21:05:22,999 [wrapper] apfmon messages muted
[2026-04-08 23:05:23] 2026-04-08 21:05:23,001 [wrapper] ==== wrapper stdout END ====
[2026-04-08 23:05:23] 2026-04-08 21:05:23,004 [wrapper] ==== wrapper stderr END ====
[2026-04-08 23:05:23]  *** Error codes and diagnostics ***
[2026-04-08 23:05:23]     "exeErrorCode": 0,
[2026-04-08 23:05:23]     "pilotErrorCode": 0,
[2026-04-08 23:05:23]  *** Listing of results directory ***
[2026-04-08 23:05:23] total 487856
[2026-04-08 23:05:23] -rwx------ 1 boinc boinc     36322 Apr  6 23:55 runpilot2-wrapper.sh
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc    644190 Apr  8 18:47 pilot3.tar.gz
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc      5094 Apr  8 18:48 queuedata.json
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc       100 Apr  8 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-08 23:05:23] -rwxr-xr-x 1 boinc boinc      7986 Apr  8 20:19 run_atlas
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc       105 Apr  8 20:19 job.xml
[2026-04-08 23:05:23] -rw-r--r-- 2 boinc boinc 253068392 Apr  8 20:19 EVNT.49515683._000011.pool.root.1
[2026-04-08 23:05:23] -rw-r--r-- 2 boinc boinc    656928 Apr  8 20:19 input.tar.gz
[2026-04-08 23:05:23] -rw-r--r-- 2 boinc boinc     15665 Apr  8 20:19 start_atlas.sh
[2026-04-08 23:05:23] drwxrwx--x 2 boinc boinc      4096 Apr  8 20:19 shared
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc         0 Apr  8 20:19 boinc_setup_complete
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc      6363 Apr  8 20:19 init_data.xml
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc         0 Apr  8 20:19 boinc_lockfile
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc      2616 Apr  8 20:19 pandaJob.out
[2026-04-08 23:05:23] -rw------- 1 boinc boinc    997213 Apr  8 20:20 agis_schedconf.cvmfs.json
[2026-04-08 23:05:23] -rw------- 1 boinc boinc   1511579 Apr  8 20:20 agis_ddmendpoints.agis.ALL.json
[2026-04-08 23:05:23] -rw------- 1 boinc boinc       426 Apr  8 20:20 workernode_map.json
[2026-04-08 23:05:23] drwx------ 5 boinc boinc      4096 Apr  8 20:20 pilot3
[2026-04-08 23:05:23] -rw------- 1 boinc boinc 240029954 Apr  8 23:04 HITS.49515685._000243.pool.root.1
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc       487 Apr  8 23:04 boinc_task_state.xml
[2026-04-08 23:05:23] -rw------- 1 boinc boinc        95 Apr  8 23:04 pilot_heartbeat.json
[2026-04-08 23:05:23] -rw------- 1 boinc boinc      1014 Apr  8 23:04 memory_monitor_summary.json
[2026-04-08 23:05:23] -rw------- 1 boinc boinc    282012 Apr  8 23:05 log.49515685._000243.job.log.tgz.1
[2026-04-08 23:05:23] -rw------- 1 boinc boinc      6318 Apr  8 23:05 heartbeat_new.json
[2026-04-08 23:05:23] -rw------- 1 boinc boinc      6209 Apr  8 23:05 heartbeat.json
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc      8192 Apr  8 23:05 boinc_mmap_file
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc        27 Apr  8 23:05 wrapper_checkpoint.txt
[2026-04-08 23:05:23] -rw------- 1 boinc boinc      4623 Apr  8 23:05 pilotlog.txt
[2026-04-08 23:05:23] -rw------- 1 boinc boinc    924182 Apr  8 23:05 log.49515685._000243.job.log.1
[2026-04-08 23:05:23] -rw------- 1 boinc boinc       357 Apr  8 23:05 output.list
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc       410 Apr  8 23:05 runtime_log
[2026-04-08 23:05:23] -rw------- 1 boinc boinc   1228800 Apr  8 23:05 result.tar.gz
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc      8533 Apr  8 23:05 runtime_log.err
[2026-04-08 23:05:23] -rw------- 1 boinc boinc       661 Apr  8 23:05 2bdbb1b48b9b.diag
[2026-04-08 23:05:23] -rw-r--r-- 1 boinc boinc     12141 Apr  8 23:05 stderr.txt
[2026-04-08 23:05:23] HITS file was successfully produced:
[2026-04-08 23:05:23] -rw------- 1 boinc boinc 240029954 Apr  8 23:04 shared/HITS.pool.root.1
[2026-04-08 23:05:23]  *** Contents of shared directory: ***
[2026-04-08 23:05:23] total 483416
[2026-04-08 23:05:23] -rw-r--r-- 2 boinc boinc 253068392 Apr  8 20:19 ATLAS.root_0
[2026-04-08 23:05:23] -rw-r--r-- 2 boinc boinc    656928 Apr  8 20:19 input.tar.gz
[2026-04-08 23:05:23] -rw-r--r-- 2 boinc boinc     15665 Apr  8 20:19 start_atlas.sh
[2026-04-08 23:05:23] -rw------- 1 boinc boinc 240029954 Apr  8 23:04 HITS.pool.root.1
[2026-04-08 23:05:23] -rw------- 1 boinc boinc   1228800 Apr  8 23:05 result.tar.gz
23:05:24 (1078909): run_atlas exited; CPU time 28588.913416
23:05:24 (1078909): called boinc_finish(0)

</stderr_txt>
]]>

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