Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:07:43 (2803803): wrapper (7.7.26015): starting
08:07:43 (2803803): wrapper: running run_atlas (--nthreads 12)
[2026-04-05 08:07:43] Arguments: --nthreads 12
[2026-04-05 08:07:43] Threads: 12
[2026-04-05 08:07:43] Checking for CVMFS
[2026-04-05 08:07:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-05 08:07:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-05 08:07:44] Running cvmfs_config stat atlas.cern.ch
[2026-04-05 08:07:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-05 08:07:44] 2.13.3.0 9714 217184 584176 158111 3 579 20141850 21042176 18552 16776704 0 898488791 99.444 1233202140 32644 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-05 08:07:44] CVMFS is ok
[2026-04-05 08:07:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-05 08:07:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-05 08:07:44] Further information can be found at the LHC@home message board.
[2026-04-05 08:07:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 08:07:44] Checking for apptainer binary...
[2026-04-05 08:07:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-05 08:07:44] Running /usr/bin/apptainer --version
[2026-04-05 08:07:44] apptainer version 1.4.5-2.el9
[2026-04-05 08:07:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 08:07:45] c-6-1.aglt2.org
[2026-04-05 08:07:45] apptainer works
[2026-04-05 08:07:45] Set ATHENA_PROC_NUMBER=12
[2026-04-05 08:07:45] Set ATHENA_CORE_NUMBER=12
[2026-04-05 08:07:45] Starting ATLAS job with PandaID=7072012917
[2026-04-05 08:07:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:12:15 (3708915): wrapper (7.7.26015): starting
15:12:15 (3708915): wrapper: running run_atlas (--nthreads 12)
[2026-04-05 15:12:15] Arguments: --nthreads 12
[2026-04-05 15:12:15] Threads: 12
[2026-04-05 15:12:15] This job has been restarted, cleaning up previous attempt
[2026-04-05 15:12:15] Checking for CVMFS
[2026-04-05 15:12:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-05 15:12:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-05 15:12:15] Running cvmfs_config stat atlas.cern.ch
[2026-04-05 15:12:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-05 15:12:16] 2.13.3.0 9714 217609 562232 158121 0 165 13940455 21042177 9400 16776704 0 898887614 99.444 1234284008 32646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-05 15:12:16] CVMFS is ok
[2026-04-05 15:12:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-05 15:12:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-05 15:12:16] Further information can be found at the LHC@home message board.
[2026-04-05 15:12:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 15:12:16] Checking for apptainer binary...
[2026-04-05 15:12:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-05 15:12:16] Running /usr/bin/apptainer --version
[2026-04-05 15:12:16] apptainer version 1.4.5-2.el9
[2026-04-05 15:12:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 15:12:16] c-6-1.aglt2.org
[2026-04-05 15:12:16] apptainer works
[2026-04-05 15:12:16] Set ATHENA_PROC_NUMBER=12
[2026-04-05 15:12:16] Set ATHENA_CORE_NUMBER=12
[2026-04-05 15:12:16] Starting ATLAS job with PandaID=7072012917
[2026-04-05 15:12:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-06 02:56:02]  *** The last 200 lines of the pilot log: ***
[2026-04-06 02:56:02] 2026-04-06 06:55:21,866 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-06 02:56:02] 2026-04-06 06:55:21,877 | INFO     | fitting pss+swap vs Time
[2026-04-06 02:56:02] 2026-04-06 06:55:21,878 | INFO     | sum of square deviations: 102302752372.40515
[2026-04-06 02:56:02] 2026-04-06 06:55:21,890 | INFO     | sum of deviations: 312512849884.7557
[2026-04-06 02:56:02] 2026-04-06 06:55:21,891 | INFO     | mean x: 1775437428.2836468
[2026-04-06 02:56:02] 2026-04-06 06:55:21,891 | INFO     | mean y: 2722694.1287988424
[2026-04-06 02:56:02] 2026-04-06 06:55:21,891 | INFO     | intersect: -5420855827.837213
[2026-04-06 02:56:02] 2026-04-06 06:55:21,892 | INFO     | chi2: 1.5099118206678621
[2026-04-06 02:56:02] 2026-04-06 06:55:21,893 | INFO     | sum of square deviations: 100098172256.60638
[2026-04-06 02:56:02] 2026-04-06 06:55:21,904 | INFO     | sum of deviations: 307372123576.2504
[2026-04-06 02:56:02] 2026-04-06 06:55:21,904 | INFO     | mean x: 1775437275.7930028
[2026-04-06 02:56:02] 2026-04-06 06:55:21,905 | INFO     | mean y: 2722338.635568513
[2026-04-06 02:56:02] 2026-04-06 06:55:21,905 | INFO     | intersect: -5449124717.452024
[2026-04-06 02:56:02] 2026-04-06 06:55:21,906 | INFO     | chi2: 1.5099781274139492
[2026-04-06 02:56:02] 2026-04-06 06:55:21,906 | INFO     | current chi2=1.5099781274139492 (change=-0.004391431683591182 %)
[2026-04-06 02:56:02] 2026-04-06 06:55:21,906 | INFO     | right removable region: 685
[2026-04-06 02:56:02] 2026-04-06 06:55:21,907 | INFO     | sum of square deviations: 100097631186.60637
[2026-04-06 02:56:02] 2026-04-06 06:55:21,919 | INFO     | sum of deviations: 183068103866.71133
[2026-04-06 02:56:02] 2026-04-06 06:55:21,919 | INFO     | mean x: 1775437580.7930028
[2026-04-06 02:56:02] 2026-04-06 06:55:21,919 | INFO     | mean y: 2731624.3148688045
[2026-04-06 02:56:02] 2026-04-06 06:55:21,920 | INFO     | intersect: -3244358117.934361
[2026-04-06 02:56:02] 2026-04-06 06:55:21,921 | INFO     | chi2: 0.043733159026698165
[2026-04-06 02:56:02] 2026-04-06 06:55:21,921 | INFO     | current chi2=0.043733159026698165 (change=97.10359516177877 %)
[2026-04-06 02:56:02] 2026-04-06 06:55:21,922 | INFO     | sum of square deviations: 97924459301.2893
[2026-04-06 02:56:02] 2026-04-06 06:55:21,934 | INFO     | sum of deviations: 165739808830.48764
[2026-04-06 02:56:02] 2026-04-06 06:55:21,934 | INFO     | mean x: 1775437733.301028
[2026-04-06 02:56:02] 2026-04-06 06:55:21,934 | INFO     | mean y: 2732836.4464023495
[2026-04-06 02:56:02] 2026-04-06 06:55:21,935 | INFO     | intersect: -3002243781.319536
[2026-04-06 02:56:02] 2026-04-06 06:55:21,936 | INFO     | chi2: 0.01077552489254373
[2026-04-06 02:56:02] 2026-04-06 06:55:21,936 | INFO     | current chi2=0.01077552489254373 (change=75.36074426737501 %)
[2026-04-06 02:56:02] 2026-04-06 06:55:21,937 | INFO     | sum of square deviations: 95783046001.6138
[2026-04-06 02:56:02] 2026-04-06 06:55:21,949 | INFO     | sum of deviations: 159008709876.6066
[2026-04-06 02:56:02] 2026-04-06 06:55:21,949 | INFO     | mean x: 1775437885.806213
[2026-04-06 02:56:02] 2026-04-06 06:55:21,949 | INFO     | mean y: 2733315.7603550297
[2026-04-06 02:56:02] 2026-04-06 06:55:21,950 | INFO     | intersect: -2944657683.7213216
[2026-04-06 02:56:02] 2026-04-06 06:55:21,951 | INFO     | chi2: 0.010137485075969437
[2026-04-06 02:56:02] 2026-04-06 06:55:21,951 | INFO     | current chi2=0.010137485075969437 (change=5.921194771827707 %)
[2026-04-06 02:56:02] 2026-04-06 06:55:21,951 | INFO     | left removable region: 30
[2026-04-06 02:56:02] 2026-04-06 06:55:21,952 | INFO     | sum of square deviations: 87130733015.58138
[2026-04-06 02:56:02] 2026-04-06 06:55:21,963 | INFO     | sum of deviations: 140307514211.39075
[2026-04-06 02:56:02] 2026-04-06 06:55:21,963 | INFO     | mean x: 1775438160.3160305
[2026-04-06 02:56:02] 2026-04-06 06:55:21,964 | INFO     | mean y: 2734024.858015267
[2026-04-06 02:56:02] 2026-04-06 06:55:21,964 | INFO     | intersect: -2856272278.525656
[2026-04-06 02:56:02] 2026-04-06 06:55:21,965 | INFO     | chi2: 0.00957990729526304
[2026-04-06 02:56:02] 2026-04-06 06:55:21,965 | INFO     | current memory leak: 1.61 B/s (using 655 data points, chi2=0.01)
[2026-04-06 02:56:02] 2026-04-06 06:55:21,966 | INFO     | could have reported an average CPU frequency of 2640 MHz (27 samples)
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | ..............................
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | . Timing measurements:
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | . get job = 0 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | . initial setup = 2 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | . payload setup = 11 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | . stage-in = 0 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,967 | INFO     | . payload execution = 42137 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,968 | INFO     | . stage-out = 2 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,968 | INFO     | . log creation = 0 s
[2026-04-06 02:56:02] 2026-04-06 06:55:21,968 | INFO     | ..............................
[2026-04-06 02:56:02] 2026-04-06 06:55:22,069 | INFO     | 
[2026-04-06 02:56:02] 2026-04-06 06:55:22,070 | INFO     | job summary report
[2026-04-06 02:56:02] 2026-04-06 06:55:22,070 | INFO     | --------------------------------------------------
[2026-04-06 02:56:02] 2026-04-06 06:55:22,070 | INFO     | PanDA job id: 7072012917
[2026-04-06 02:56:02] 2026-04-06 06:55:22,070 | INFO     | task id: 49181984
[2026-04-06 02:56:02] 2026-04-06 06:55:22,071 | INFO     | errors: (none)
[2026-04-06 02:56:02] 2026-04-06 06:55:22,071 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-06 02:56:02] 2026-04-06 06:55:22,071 | INFO     | pilot state: finished 
[2026-04-06 02:56:02] 2026-04-06 06:55:22,071 | INFO     | transexitcode: 0
[2026-04-06 02:56:02] 2026-04-06 06:55:22,071 | INFO     | exeerrorcode: 0
[2026-04-06 02:56:02] 2026-04-06 06:55:22,072 | INFO     | exeerrordiag: 
[2026-04-06 02:56:02] 2026-04-06 06:55:22,072 | INFO     | exitcode: 0
[2026-04-06 02:56:02] 2026-04-06 06:55:22,072 | INFO     | exitmsg: OK
[2026-04-06 02:56:02] 2026-04-06 06:55:22,072 | INFO     | cpuconsumptiontime: 101481 s
[2026-04-06 02:56:02] 2026-04-06 06:55:22,072 | INFO     | nevents: 400
[2026-04-06 02:56:02] 2026-04-06 06:55:22,073 | INFO     | neventsw: 0
[2026-04-06 02:56:02] 2026-04-06 06:55:22,073 | INFO     | pid: 3726965
[2026-04-06 02:56:02] 2026-04-06 06:55:22,073 | INFO     | pgrp: 3726965
[2026-04-06 02:56:02] 2026-04-06 06:55:22,073 | INFO     | corecount: 12
[2026-04-06 02:56:02] 2026-04-06 06:55:22,073 | INFO     | event service: False
[2026-04-06 02:56:02] 2026-04-06 06:55:22,074 | INFO     | sizes: {0: 2279890, 1: 2280351, 11: 2280351, 42152: 2323606, 42155: 2332604, 42157: 2332982}
[2026-04-06 02:56:02] 2026-04-06 06:55:22,074 | INFO     | --------------------------------------------------
[2026-04-06 02:56:02] 2026-04-06 06:55:22,074 | INFO     | 
[2026-04-06 02:56:02] 2026-04-06 06:55:22,074 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-06 02:56:02] 2026-04-06 06:55:22,093 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,093 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,093 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,093 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,096 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-06 02:56:02] 2026-04-06 06:55:22,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,096 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-06 02:56:02] 2026-04-06 06:55:22,096 | INFO     | job 7072012917 has completed (purged errors)
[2026-04-06 02:56:02] 2026-04-06 06:55:22,097 | INFO     | overall cleanup function is called
[2026-04-06 02:56:02] 2026-04-06 06:55:22,360 | WARNING  | process 3726965 can no longer be monitored (due to stat problems) - aborting
[2026-04-06 02:56:02] 2026-04-06 06:55:22,621 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-06 02:56:02] 2026-04-06 06:55:22,622 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-06 02:56:02] 2026-04-06 06:55:22,622 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-06 02:56:02] 2026-04-06 06:55:22,622 | WARNING  | maxPSS not found in memory monitor output
[2026-04-06 02:56:02] 2026-04-06 06:55:22,932 | INFO     | number of running child processes to parent process 3726965: 1
[2026-04-06 02:56:02] 2026-04-06 06:55:22,933 | INFO     | maximum number of monitored processes: 6
[2026-04-06 02:56:02] 2026-04-06 06:55:22,933 | INFO     | aborting job monitoring since job object (job id=7072012917) has expired
[2026-04-06 02:56:02] 2026-04-06 06:55:23,106 | INFO     | --- collectZombieJob: --- 10, [3726965]
[2026-04-06 02:56:02] 2026-04-06 06:55:23,107 | INFO     | zombie collector waiting for pid 3726965
[2026-04-06 02:56:02] 2026-04-06 06:55:23,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-06 02:56:02] 2026-04-06 06:55:23,107 | INFO     | collected zombie processes
[2026-04-06 02:56:02] 2026-04-06 06:55:23,107 | INFO     | will attempt to kill all subprocesses of pid=3726965
[2026-04-06 02:56:02] 2026-04-06 06:55:23,423 | INFO     | process IDs to be killed: [3726965] (in reverse order)
[2026-04-06 02:56:02] 2026-04-06 06:55:23,509 | WARNING  | found no corresponding commands to process id(s)
[2026-04-06 02:56:02] 2026-04-06 06:55:23,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-06 02:56:02] 2026-04-06 06:55:23,521 | INFO     | did not find any defunct processes belonging to 3726965
[2026-04-06 02:56:02] 2026-04-06 06:55:23,532 | INFO     | did not find any defunct processes belonging to 3726965
[2026-04-06 02:56:02] 2026-04-06 06:55:23,533 | INFO     | ready for new job
[2026-04-06 02:56:02] 2026-04-06 06:55:23,533 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-06 02:56:02] 2026-04-06 06:55:23,536 | INFO     | **************************************
[2026-04-06 02:56:02] 2026-04-06 06:55:23,536 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-06 02:56:02] 2026-04-06 06:55:23,536 | INFO     | **************************************
[2026-04-06 02:56:02] 2026-04-06 06:55:23,536 | INFO     | 
[2026-04-06 02:56:02] 2026-04-06 06:55:23,538 | INFO     | architecture information:
[2026-04-06 02:56:02] 2026-04-06 06:55:23,538 | INFO     | executing command: cat /etc/os-release
[2026-04-06 02:56:02] 2026-04-06 06:55:23,553 | INFO     | cat /etc/os-release:
[2026-04-06 02:56:02] NAME="CentOS Linux"
[2026-04-06 02:56:02] VERSION="7 (Core)"
[2026-04-06 02:56:02] ID="centos"
[2026-04-06 02:56:02] ID_LIKE="rhel fedora"
[2026-04-06 02:56:02] VERSION_ID="7"
[2026-04-06 02:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-06 02:56:02] ANSI_COLOR="0;31"
[2026-04-06 02:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-06 02:56:02] HOME_URL="https://www.centos.org/"
[2026-04-06 02:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-06 02:56:02] 
[2026-04-06 02:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-06 02:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-06 02:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-06 02:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-06 02:56:02] 
[2026-04-06 02:56:02] 2026-04-06 06:55:23,554 | INFO     | **************************************
[2026-04-06 02:56:02] 2026-04-06 06:55:24,057 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-06 02:56:02] 2026-04-06 06:55:24,073 | INFO     | sufficient remaining disk space (53684994048 B)
[2026-04-06 02:56:02] 2026-04-06 06:55:24,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-06 02:56:02] 2026-04-06 06:55:24,073 | INFO     | current server update state: UPDATING_FINAL
[2026-04-06 02:56:02] 2026-04-06 06:55:24,073 | INFO     | update_server=False
[2026-04-06 02:56:02] 2026-04-06 06:55:24,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-06 02:56:02] 2026-04-06 06:55:24,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-06 02:56:02] 2026-04-06 06:55:24,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-06 02:56:02] 2026-04-06 06:55:24,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-06 02:56:02] 2026-04-06 06:55:24,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-06 02:56:02] 2026-04-06 06:55:24,075 | INFO     | aborting loop
[2026-04-06 02:56:02] 2026-04-06 06:55:24,372 | INFO     | all job control threads have been joined
[2026-04-06 02:56:02] 2026-04-06 06:55:24,482 | INFO     | all data control threads have been joined
[2026-04-06 02:56:02] 2026-04-06 06:55:25,079 | INFO     | [job] retrieve thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,079 | INFO     | [job] queue monitor thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,080 | INFO     | [job] job monitor thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,300 | INFO     | [data] copytool_in thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,378 | INFO     | [job] control thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,451 | INFO     | [payload] validate_pre thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,469 | INFO     | all payload control threads have been joined
[2026-04-06 02:56:02] 2026-04-06 06:55:25,487 | INFO     | [data] control thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,593 | INFO     | [job] create_data_payload thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:25,990 | INFO     | [job] validate thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:26,019 | INFO     | [payload] failed_post thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:26,079 | INFO     | [payload] execute_payloads thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:26,079 | INFO     | [data] copytool_out thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:26,473 | INFO     | [payload] control thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:26,678 | INFO     | [payload] validate_post thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:28,079 | INFO     | [data] queue_monitor thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:34,201 | INFO     | job.realtimelogging is not enabled
[2026-04-06 02:56:02] 2026-04-06 06:55:35,206 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-06 02:56:02] 2026-04-06 06:55:54,908 | INFO     | PID=3720141 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-06 02:56:02] 2026-04-06 06:55:54,908 | INFO     | .. there are 12 such processes running
[2026-04-06 02:56:02] 2026-04-06 06:55:54,909 | INFO     | found 0 job(s) in 20 queues
[2026-04-06 02:56:02] 2026-04-06 06:55:54,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-06 02:56:02] 2026-04-06 06:55:54,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-06 02:56:02] 2026-04-06 06:55:55,448 | INFO     | [monitor] cgroup control has ended
[2026-04-06 02:56:02] 2026-04-06 06:55:57,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140617390679872)>', '<ExcThread(monitor, started 140616608503552)>']
[2026-04-06 02:56:02] 2026-04-06 06:55:57,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-06 02:56:02] 2026-04-06 06:55:57,924 | INFO     | [monitor] control thread has ended
[2026-04-06 02:56:02] 2026-04-06 06:56:02,144 | INFO     | all workflow threads have been joined
[2026-04-06 02:56:02] 2026-04-06 06:56:02,145 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-06 02:56:02] 2026-04-06 06:56:02,145 | INFO     | traces error code: 0
[2026-04-06 02:56:02] 2026-04-06 06:56:02,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-06 02:56:02] 2026-04-06 06:56:02,284 [wrapper] ==== pilot stdout END ====
[2026-04-06 02:56:02] 2026-04-06 06:56:02,287 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-06 02:56:02] 2026-04-06 06:56:02,290 [wrapper] pilotpid: 3720141
[2026-04-06 02:56:02] 2026-04-06 06:56:02,292 [wrapper] Pilot exit status: 0
[2026-04-06 02:56:02] 2026-04-06 06:56:02,303 [wrapper] pandaids: 7072012917 7072012917
[2026-04-06 02:56:02] 2026-04-06 06:56:02,360 [wrapper] cleanup supervisor_pilot  938656 3720142
[2026-04-06 02:56:02] 2026-04-06 06:56:02,363 [wrapper] Test setup, not cleaning
[2026-04-06 02:56:02] 2026-04-06 06:56:02,367 [wrapper] apfmon messages muted
[2026-04-06 02:56:02] 2026-04-06 06:56:02,370 [wrapper] ==== wrapper stdout END ====
[2026-04-06 02:56:02] 2026-04-06 06:56:02,374 [wrapper] ==== wrapper stderr END ====
[2026-04-06 02:56:02]  *** Error codes and diagnostics ***
[2026-04-06 02:56:02]     "exeErrorCode": 0,
[2026-04-06 02:56:02]     "exeErrorDiag": "",
[2026-04-06 02:56:02]     "pilotErrorCode": 0,
[2026-04-06 02:56:02]     "pilotErrorDiag": "",
[2026-04-06 02:56:02]  *** Listing of results directory ***
[2026-04-06 02:56:02] total 738652
[2026-04-06 02:56:02] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas      5118 Mar 28 08:19 queuedata.json
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas    585013 Mar 28 08:19 pilot3.tar.gz
[2026-04-06 02:56:02] -rwx------. 1 boincer umatlas     36322 Mar 28 08:19 runpilot2-wrapper.sh
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas       100 Apr  5 08:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-06 02:56:02] -rwxr-xr-x. 1 boincer umatlas      7986 Apr  5 08:07 run_atlas
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas       105 Apr  5 08:07 job.xml
[2026-04-06 02:56:02] -rw-r--r--. 3 boincer umatlas 251929025 Apr  5 08:07 EVNT.49136095._000007.pool.root.1
[2026-04-06 02:56:02] -rw-r--r--. 3 boincer umatlas 251929025 Apr  5 08:07 ATLAS.root_0
[2026-04-06 02:56:02] -rw-r--r--. 2 boincer umatlas     15845 Apr  5 08:07 start_atlas.sh
[2026-04-06 02:56:02] drwxrwx--x. 2 boincer umatlas      4096 Apr  5 08:07 shared
[2026-04-06 02:56:02] -rw-r--r--. 2 boincer umatlas    597538 Apr  5 08:07 input.tar.gz
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas         0 Apr  5 08:07 boinc_lockfile
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas      2632 Apr  5 15:12 pandaJob.out
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas        57 Apr  5 15:12 setup.sh.local
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas   1005096 Apr  5 15:12 agis_schedconf.cvmfs.json
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas       438 Apr  5 15:12 workernode_map.json
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas 236966099 Apr  6 02:54 HITS.49181984._000167.pool.root.1
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas       533 Apr  6 02:54 boinc_task_state.xml
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas      1054 Apr  6 02:55 memory_monitor_summary.json
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas   1511579 Apr  6 02:55 agis_ddmendpoints.agis.ALL.json
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas    844954 Apr  6 02:55 log.49181984._000167.job.log.tgz.1
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas        96 Apr  6 02:55 pilot_heartbeat.json
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas      6404 Apr  6 02:55 heartbeat.json
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas      6659 Apr  6 02:55 init_data.xml
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas      8192 Apr  6 02:55 boinc_mmap_file
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas        29 Apr  6 02:55 wrapper_checkpoint.txt
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas      4892 Apr  6 02:56 pilotlog.txt
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas   4957904 Apr  6 02:56 log.49181984._000167.job.log.1
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas       357 Apr  6 02:56 output.list
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas       620 Apr  6 02:56 runtime_log
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas   5816320 Apr  6 02:56 result.tar.gz
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas       786 Apr  6 02:56 TcaLDmkohQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmwzHKDmdYiRMm.diag
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas      9414 Apr  6 02:56 runtime_log.err
[2026-04-06 02:56:02] -rw-r--r--. 1 boincer umatlas     23409 Apr  6 02:56 stderr.txt
[2026-04-06 02:56:02] HITS file was successfully produced:
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas 236966099 Apr  6 02:54 shared/HITS.pool.root.1
[2026-04-06 02:56:02]  *** Contents of shared directory: ***
[2026-04-06 02:56:02] total 483732
[2026-04-06 02:56:02] -rw-r--r--. 3 boincer umatlas 251929025 Apr  5 08:07 ATLAS.root_0
[2026-04-06 02:56:02] -rw-r--r--. 2 boincer umatlas     15845 Apr  5 08:07 start_atlas.sh
[2026-04-06 02:56:02] -rw-r--r--. 2 boincer umatlas    597538 Apr  5 08:07 input.tar.gz
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas 236966099 Apr  6 02:54 HITS.pool.root.1
[2026-04-06 02:56:02] -rw-------. 1 boincer umatlas   5816320 Apr  6 02:56 result.tar.gz
02:56:03 (3708915): run_atlas exited; CPU time 102928.426484
02:56:03 (3708915): called boinc_finish(0)

</stderr_txt>
]]>

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