Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:47:26 (11522): wrapper (7.7.26015): starting
01:47:26 (11522): wrapper: running run_atlas (--nthreads 4)
[2026-04-05 01:47:26] Arguments: --nthreads 4
[2026-04-05 01:47:26] Threads: 4
[2026-04-05 01:47:26] Checking for CVMFS
[2026-04-05 01:47:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-05 01:47:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-05 01:47:27] Running cvmfs_config stat atlas.cern.ch
[2026-04-05 01:47:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-05 01:47:27] 2.13.3.0 4090080 327 47812 158101 1 50 3671945 4096001 1832 130560 0 240530 99.985 11311 952 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-04-05 01:47:27] CVMFS is ok
[2026-04-05 01:47:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-05 01:47:27] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-05 01:47:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-05 01:47:27] Further information can be found at the LHC@home message board.
[2026-04-05 01:47:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 01:47:27] Checking for apptainer binary...
[2026-04-05 01:47:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-05 01:47:27] Running /usr/bin/apptainer --version
[2026-04-05 01:47:27] apptainer version 1.4.5
[2026-04-05 01:47:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 01:47:27] OptiPlex7070-Ubuntu
[2026-04-05 01:47:27] apptainer works
[2026-04-05 01:47:27] Set ATHENA_PROC_NUMBER=4
[2026-04-05 01:47:27] Set ATHENA_CORE_NUMBER=4
[2026-04-05 01:47:27] Starting ATLAS job with PandaID=7071842300
[2026-04-05 01:47:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-05 04:24:00]  *** The last 200 lines of the pilot log: ***
[2026-04-05 04:24:00] 2026-04-05 08:23:07,842 | INFO     | preparing for final server update for job 7071842300 in state='finished'
[2026-04-05 04:24:00] 2026-04-05 08:23:08,145 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,145 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7071842300/jobReport.json
[2026-04-05 04:24:00] 2026-04-05 08:23:08,146 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/3/workernode_map.json
[2026-04-05 04:24:00] 2026-04-05 08:23:08,147 | INFO     | this job has now completed (state=finished)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,147 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,147 | INFO     | log transfer has been attempted: DONE
[2026-04-05 04:24:00] 2026-04-05 08:23:08,147 | INFO     | job 7071842300 has finished - writing final server update
[2026-04-05 04:24:00] 2026-04-05 08:23:08,147 | INFO     | total number of processed events: 400 (read)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,149 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7071842300/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,149 | INFO     | extracted standard info from prmon json
[2026-04-05 04:24:00] 2026-04-05 08:23:08,149 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 04:24:00] 2026-04-05 08:23:08,149 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-05 04:24:00] 2026-04-05 08:23:08,149 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 04:24:00] 2026-04-05 08:23:08,149 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 04:24:00] 2026-04-05 08:23:08,151 | INFO     | fitting pss+swap vs Time
[2026-04-05 04:24:00] 2026-04-05 08:23:08,151 | INFO     | sum of square deviations: 1110539892.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,152 | INFO     | sum of deviations: -12236279018.000004
[2026-04-05 04:24:00] 2026-04-05 08:23:08,152 | INFO     | mean x: 1775372717.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,152 | INFO     | mean y: 2389229.1764705884
[2026-04-05 04:24:00] 2026-04-05 08:23:08,152 | INFO     | intersect: 19564006135.19641
[2026-04-05 04:24:00] 2026-04-05 08:23:08,152 | INFO     | chi2: 1.554201200802652
[2026-04-05 04:24:00] 2026-04-05 08:23:08,152 | INFO     | sum of square deviations: 1005179777.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | sum of deviations: -11935397890.500002
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | mean x: 1775372564.5
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | mean y: 2389664.831081081
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | intersect: 21082974895.491646
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | chi2: 1.5498023260359912
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | current chi2=1.5498023260359912 (change=0.28303122944371883 %)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | right removable region: 147
[2026-04-05 04:24:00] 2026-04-05 08:23:08,153 | INFO     | sum of square deviations: 1005179777.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | sum of deviations: -27667726568.000004
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | mean x: 1775372869.5
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | mean y: 2411017.7837837837
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | intersect: 48869819847.051895
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | chi2: 0.2819872826666374
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | current chi2=0.2819872826666374 (change=81.85644931164589 %)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,154 | INFO     | sum of square deviations: 906703512.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | sum of deviations: -20989431684.000004
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | mean x: 1775373022.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | mean y: 2400665.811188811
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | intersect: 41100808541.930275
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | chi2: 0.25605781325841914
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | current chi2=0.25605781325841914 (change=9.19526198593567 %)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | left removable region: 20
[2026-04-05 04:24:00] 2026-04-05 08:23:08,155 | INFO     | sum of square deviations: 635130048.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | sum of deviations: -6021111018.000001
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | mean x: 1775373144.0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | mean y: 2374692.307086614
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | intersect: 16833130585.62565
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | chi2: 0.12313281576208605
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | current memory leak: -9.48 B/s (using 127 data points, chi2=0.12)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | could have reported an average CPU frequency of 3399 MHz (9 samples)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | ..............................
[2026-04-05 04:24:00] 2026-04-05 08:23:08,156 | INFO     | . Timing measurements:
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . get job = 0 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . initial setup = 5 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . payload setup = 5 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . stage-in = 0 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . payload execution = 9305 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . stage-out = 0 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | . log creation = 0 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,157 | INFO     | ..............................
[2026-04-05 04:24:00] 2026-04-05 08:23:08,193 | INFO     | 
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | job summary report
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | --------------------------------------------------
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | PanDA job id: 7071842300
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | task id: 49192101
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | errors: (none)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | pilot state: finished 
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | transexitcode: 0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | exeerrorcode: 0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | exeerrordiag: 
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | exitcode: 0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | exitmsg: OK
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | cpuconsumptiontime: 36240 s
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | nevents: 400
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | neventsw: 0
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | pid: 20228
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | pgrp: 20228
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | corecount: 4
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | event service: False
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | sizes: {0: 2279864, 1: 2280325, 11: 2280325, 9314: 2308828, 9315: 2317854, 9316: 2318296}
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | --------------------------------------------------
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | 
[2026-04-05 04:24:00] 2026-04-05 08:23:08,194 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/3
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-05 04:24:00] 2026-04-05 08:23:08,205 | INFO     | job 7071842300 has completed (purged errors)
[2026-04-05 04:24:00] 2026-04-05 08:23:08,205 | INFO     | overall cleanup function is called
[2026-04-05 04:24:00] 2026-04-05 08:23:09,211 | INFO     | --- collectZombieJob: --- 10, [20228]
[2026-04-05 04:24:00] 2026-04-05 08:23:09,211 | INFO     | zombie collector waiting for pid 20228
[2026-04-05 04:24:00] 2026-04-05 08:23:09,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-05 04:24:00] 2026-04-05 08:23:09,211 | INFO     | collected zombie processes
[2026-04-05 04:24:00] 2026-04-05 08:23:09,211 | INFO     | will attempt to kill all subprocesses of pid=20228
[2026-04-05 04:24:00] 2026-04-05 08:23:09,269 | INFO     | process IDs to be killed: [20228] (in reverse order)
[2026-04-05 04:24:00] 2026-04-05 08:23:09,290 | WARNING  | found no corresponding commands to process id(s)
[2026-04-05 04:24:00] 2026-04-05 08:23:09,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-05 04:24:00] 2026-04-05 08:23:09,292 | INFO     | did not find any defunct processes belonging to 20228
[2026-04-05 04:24:00] 2026-04-05 08:23:09,293 | INFO     | did not find any defunct processes belonging to 20228
[2026-04-05 04:24:00] 2026-04-05 08:23:09,293 | INFO     | ready for new job
[2026-04-05 04:24:00] 2026-04-05 08:23:09,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-05 04:24:00] 2026-04-05 08:23:09,293 | INFO     | **************************************
[2026-04-05 04:24:00] 2026-04-05 08:23:09,293 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-05 04:24:00] 2026-04-05 08:23:09,294 | INFO     | **************************************
[2026-04-05 04:24:00] 2026-04-05 08:23:09,294 | INFO     | 
[2026-04-05 04:24:00] 2026-04-05 08:23:09,294 | INFO     | architecture information:
[2026-04-05 04:24:00] 2026-04-05 08:23:09,294 | INFO     | executing command: cat /etc/os-release
[2026-04-05 04:24:00] 2026-04-05 08:23:09,301 | INFO     | cat /etc/os-release:
[2026-04-05 04:24:00] NAME="CentOS Linux"
[2026-04-05 04:24:00] VERSION="7 (Core)"
[2026-04-05 04:24:00] ID="centos"
[2026-04-05 04:24:00] ID_LIKE="rhel fedora"
[2026-04-05 04:24:00] VERSION_ID="7"
[2026-04-05 04:24:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-05 04:24:00] ANSI_COLOR="0;31"
[2026-04-05 04:24:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-05 04:24:00] HOME_URL="https://www.centos.org/"
[2026-04-05 04:24:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-05 04:24:00] 
[2026-04-05 04:24:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-05 04:24:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-05 04:24:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-05 04:24:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-05 04:24:00] 
[2026-04-05 04:24:00] 2026-04-05 08:23:09,301 | INFO     | **************************************
[2026-04-05 04:24:00] 2026-04-05 08:23:09,804 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/3
[2026-04-05 04:24:00] 2026-04-05 08:23:09,812 | INFO     | sufficient remaining disk space (412089319424 B)
[2026-04-05 04:24:00] 2026-04-05 08:23:09,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-05 04:24:00] 2026-04-05 08:23:09,812 | INFO     | current server update state: UPDATING_FINAL
[2026-04-05 04:24:00] 2026-04-05 08:23:09,812 | INFO     | update_server=False
[2026-04-05 04:24:00] 2026-04-05 08:23:09,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-05 04:24:00] 2026-04-05 08:23:09,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-05 04:24:00] 2026-04-05 08:23:09,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-05 04:24:00] 2026-04-05 08:23:09,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-05 04:24:00] 2026-04-05 08:23:10,051 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-05 04:24:00] 2026-04-05 08:23:10,051 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-05 04:24:00] 2026-04-05 08:23:10,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-05 04:24:00] 2026-04-05 08:23:10,051 | INFO     | will abort loop
[2026-04-05 04:24:00] 2026-04-05 08:23:10,071 | INFO     | job.realtimelogging is not enabled
[2026-04-05 04:24:00] 2026-04-05 08:23:10,099 | INFO     | all data control threads have been joined
[2026-04-05 04:24:00] 2026-04-05 08:23:10,252 | INFO     | all payload control threads have been joined
[2026-04-05 04:24:00] 2026-04-05 08:23:10,656 | INFO     | all job control threads have been joined
[2026-04-05 04:24:00] 2026-04-05 08:23:10,818 | INFO     | [job] retrieve thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:10,818 | INFO     | [job] queue monitor thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,056 | INFO     | [job] job monitor thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,076 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,105 | INFO     | [data] control thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,257 | INFO     | [payload] control thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,437 | INFO     | [job] validate thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,661 | INFO     | [job] control thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,705 | INFO     | [job] create_data_payload thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,761 | INFO     | [payload] validate_pre thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,777 | INFO     | [payload] execute_payloads thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,818 | INFO     | [data] copytool_out thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:11,989 | INFO     | [data] copytool_in thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:12,105 | INFO     | [payload] validate_post thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:12,301 | INFO     | [payload] failed_post thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:13,818 | INFO     | [data] queue_monitor thread has finished
[2026-04-05 04:24:00] 2026-04-05 08:23:40,915 | INFO     | PID=15709 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-05 04:24:00] 2026-04-05 08:23:40,915 | INFO     | found 0 job(s) in 20 queues
[2026-04-05 04:24:00] 2026-04-05 08:23:40,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-05 04:24:00] 2026-04-05 08:23:40,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-05 04:24:00] 2026-04-05 08:23:54,839 | INFO     | [monitor] cgroup control has ended
[2026-04-05 04:24:00] 2026-04-05 08:23:55,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123151396063040)>', '<ExcThread(monitor, started 123151040100096)>']
[2026-04-05 04:24:00] 2026-04-05 08:23:55,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-05 04:24:00] 2026-04-05 08:23:55,991 | INFO     | [monitor] control thread has ended
[2026-04-05 04:24:00] 2026-04-05 08:24:00,347 | INFO     | all workflow threads have been joined
[2026-04-05 04:24:00] 2026-04-05 08:24:00,347 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-05 04:24:00] 2026-04-05 08:24:00,347 | INFO     | traces error code: 0
[2026-04-05 04:24:00] 2026-04-05 08:24:00,347 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-05 04:24:00] 2026-04-05 08:24:00,393 [wrapper] ==== pilot stdout END ====
[2026-04-05 04:24:00] 2026-04-05 08:24:00,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-05 04:24:00] 2026-04-05 08:24:00,397 [wrapper] pilotpid: 15709
[2026-04-05 04:24:00] 2026-04-05 08:24:00,398 [wrapper] Pilot exit status: 0
[2026-04-05 04:24:00] 2026-04-05 08:24:00,404 [wrapper] pandaids: 7071842300
[2026-04-05 04:24:00] 2026-04-05 08:24:00,420 [wrapper] cleanup supervisor_pilot   50345 15710
[2026-04-05 04:24:00] 2026-04-05 08:24:00,421 [wrapper] Test setup, not cleaning
[2026-04-05 04:24:00] 2026-04-05 08:24:00,423 [wrapper] apfmon messages muted
[2026-04-05 04:24:00] 2026-04-05 08:24:00,424 [wrapper] ==== wrapper stdout END ====
[2026-04-05 04:24:00] 2026-04-05 08:24:00,426 [wrapper] ==== wrapper stderr END ====
[2026-04-05 04:24:00]  *** Error codes and diagnostics ***
[2026-04-05 04:24:00]     "exeErrorCode": 0,
[2026-04-05 04:24:00]     "exeErrorDiag": "",
[2026-04-05 04:24:00]     "pilotErrorCode": 0,
[2026-04-05 04:24:00]     "pilotErrorDiag": "",
[2026-04-05 04:24:00]  *** Listing of results directory ***
[2026-04-05 04:24:00] total 455164
[2026-04-05 04:24:00] -rwx------ 1 whitlerd whitlerd     36322 Mar 27 22:42 runpilot2-wrapper.sh
[2026-04-05 04:24:00] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 27 22:43 pilot3.tar.gz
[2026-04-05 04:24:00] -rw-r--r-- 1 whitlerd whitlerd      5118 Mar 27 22:45 queuedata.json
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd       100 Apr  5 01:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-05 04:24:00] -rwxr-xr-x 1 whitlerd whitlerd      7986 Apr  5 01:47 run_atlas
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd       105 Apr  5 01:47 job.xml
[2026-04-05 04:24:00] -rw-r--r-- 2 whitlerd whitlerd 249968813 Apr  5 01:47 EVNT.49130233._000001.pool.root.1
[2026-04-05 04:24:00] -rw-r--r-- 2 whitlerd whitlerd     15845 Apr  5 01:47 start_atlas.sh
[2026-04-05 04:24:00] drwxrwx--x 2 whitlerd whitlerd      4096 Apr  5 01:47 shared
[2026-04-05 04:24:00] -rw-r--r-- 2 whitlerd whitlerd    597561 Apr  5 01:47 input.tar.gz
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd      6445 Apr  5 01:47 init_data.xml
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr  5 01:47 boinc_setup_complete
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr  5 01:47 boinc_lockfile
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd      2655 Apr  5 01:47 pandaJob.out
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd   1005104 Apr  5 01:47 agis_schedconf.cvmfs.json
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd   1511579 Apr  5 01:47 agis_ddmendpoints.agis.ALL.json
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd       439 Apr  5 01:47 workernode_map.json
[2026-04-05 04:24:00] drwx------ 5 whitlerd whitlerd      4096 Apr  5 01:47 pilot3
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd 208780209 Apr  5 04:22 HITS.49192101._000049.pool.root.1
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd       529 Apr  5 04:22 boinc_task_state.xml
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd        95 Apr  5 04:22 pilot_heartbeat.json
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd      1028 Apr  5 04:23 memory_monitor_summary.json
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd    341012 Apr  5 04:23 log.49192101._000049.job.log.tgz.1
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd      6348 Apr  5 04:23 heartbeat.json
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd        27 Apr  5 04:23 wrapper_checkpoint.txt
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd      8192 Apr  5 04:23 boinc_mmap_file
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd      5015 Apr  5 04:24 pilotlog.txt
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd   1359115 Apr  5 04:24 log.49192101._000049.job.log.1
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd       357 Apr  5 04:24 output.list
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd       620 Apr  5 04:24 runtime_log
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd   1720320 Apr  5 04:24 result.tar.gz
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd       657 Apr  5 04:24 z0OKDmLoYQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmlcGKDmAdbH0n.diag
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd      9054 Apr  5 04:24 runtime_log.err
[2026-04-05 04:24:00] -rw-rw-r-- 1 whitlerd whitlerd     21381 Apr  5 04:24 stderr.txt
[2026-04-05 04:24:00] HITS file was successfully produced:
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd 208780209 Apr  5 04:22 shared/HITS.pool.root.1
[2026-04-05 04:24:00]  *** Contents of shared directory: ***
[2026-04-05 04:24:00] total 450288
[2026-04-05 04:24:00] -rw-r--r-- 2 whitlerd whitlerd 249968813 Apr  5 01:47 ATLAS.root_0
[2026-04-05 04:24:00] -rw-r--r-- 2 whitlerd whitlerd     15845 Apr  5 01:47 start_atlas.sh
[2026-04-05 04:24:00] -rw-r--r-- 2 whitlerd whitlerd    597561 Apr  5 01:47 input.tar.gz
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd 208780209 Apr  5 04:22 HITS.pool.root.1
[2026-04-05 04:24:00] -rw------- 1 whitlerd whitlerd   1720320 Apr  5 04:24 result.tar.gz
04:24:02 (11522): run_atlas exited; CPU time 36388.860321
04:24:02 (11522): called boinc_finish(0)

</stderr_txt>
]]>

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