Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:17:46 (72876): wrapper (7.7.26015): starting
06:17:46 (72876): wrapper: running run_atlas (--nthreads 4)
[2026-04-04 06:17:46] Arguments: --nthreads 4
[2026-04-04 06:17:46] Threads: 4
[2026-04-04 06:17:46] Checking for CVMFS
[2026-04-04 06:17:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-04 06:17:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-04 06:17:47] Running cvmfs_config stat atlas.cern.ch
[2026-04-04 06:17:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-04 06:17:47] 2.13.3.0 4070849 714 56220 158074 2 49 2984930 4096001 1763 130560 0 553610 99.988 26021 1201 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2026-04-04 06:17:47] CVMFS is ok
[2026-04-04 06:17:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-04 06:17:47] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-04 06:17:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-04 06:17:47] Further information can be found at the LHC@home message board.
[2026-04-04 06:17:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-04 06:17:47] Checking for apptainer binary...
[2026-04-04 06:17:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-04 06:17:47] Running /usr/bin/apptainer --version
[2026-04-04 06:17:47] apptainer version 1.4.5
[2026-04-04 06:17:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-04 06:17:47] T3500-Ubuntu
[2026-04-04 06:17:47] apptainer works
[2026-04-04 06:17:47] Set ATHENA_PROC_NUMBER=4
[2026-04-04 06:17:47] Set ATHENA_CORE_NUMBER=4
[2026-04-04 06:17:47] Starting ATLAS job with PandaID=7065845487
[2026-04-04 06:17:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-04 08:41:25]  *** The last 200 lines of the pilot log: ***
[2026-04-04 08:41:25] 2026-04-04 12:40:33,953 | INFO     | time since job start (8548s) is within the limit (345600.0s)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,665 | INFO     | job 7065845487 has state=finished
[2026-04-04 08:41:25] 2026-04-04 12:40:34,666 | INFO     | preparing for final server update for job 7065845487 in state='finished'
[2026-04-04 08:41:25] 2026-04-04 12:40:34,666 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/10/PanDA_Pilot-7065845487/jobReport.json
[2026-04-04 08:41:25] 2026-04-04 12:40:34,668 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/10/workernode_map.json
[2026-04-04 08:41:25] 2026-04-04 12:40:34,668 | INFO     | this job has now completed (state=finished)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,668 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,668 | INFO     | log transfer has been attempted: DONE
[2026-04-04 08:41:25] 2026-04-04 12:40:34,668 | INFO     | job 7065845487 has finished - writing final server update
[2026-04-04 08:41:25] 2026-04-04 12:40:34,669 | INFO     | total number of processed events: 400 (read)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,674 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/10/PanDA_Pilot-7065845487/memory_monitor_summary.json (trf name=prmon)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,675 | INFO     | extracted standard info from prmon json
[2026-04-04 08:41:25] 2026-04-04 12:40:34,675 | INFO     | extracted standard memory fields from prmon json
[2026-04-04 08:41:25] 2026-04-04 12:40:34,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-04 08:41:25] 2026-04-04 12:40:34,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-04 08:41:25] 2026-04-04 12:40:34,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-04 08:41:25] 2026-04-04 12:40:34,677 | INFO     | fitting pss+swap vs Time
[2026-04-04 08:41:25] 2026-04-04 12:40:34,678 | INFO     | sum of square deviations: 850825255.0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,678 | INFO     | sum of deviations: -15326086459.000002
[2026-04-04 08:41:25] 2026-04-04 12:40:34,678 | INFO     | mean x: 1775302150.5
[2026-04-04 08:41:25] 2026-04-04 12:40:34,678 | INFO     | mean y: 2384740.5428571426
[2026-04-04 08:41:25] 2026-04-04 12:40:34,679 | INFO     | intersect: 31981259473.65316
[2026-04-04 08:41:25] 2026-04-04 12:40:34,679 | INFO     | chi2: 1.3805677542267276
[2026-04-04 08:41:25] 2026-04-04 12:40:34,679 | INFO     | sum of square deviations: 762879420.0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | sum of deviations: -14040582585.0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | mean x: 1775301998.0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | mean y: 2386970.577777778
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | intersect: 32676324243.960384
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | chi2: 1.3791955862217091
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | current chi2=1.3791955862217091 (change=0.09939157283787642 %)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | right removable region: 134
[2026-04-04 08:41:25] 2026-04-04 12:40:34,680 | INFO     | sum of square deviations: 762879420.0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,681 | INFO     | sum of deviations: -29449193747.999992
[2026-04-04 08:41:25] 2026-04-04 12:40:34,681 | INFO     | mean x: 1775302303.0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,681 | INFO     | mean y: 2408569.0074074073
[2026-04-04 08:41:25] 2026-04-04 12:40:34,681 | INFO     | intersect: 68533843697.14022
[2026-04-04 08:41:25] 2026-04-04 12:40:34,681 | INFO     | chi2: 0.08886054574916179
[2026-04-04 08:41:25] 2026-04-04 12:40:34,682 | INFO     | current chi2=0.08886054574916179 (change=93.56347810695219 %)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,682 | INFO     | sum of square deviations: 681212772.5
[2026-04-04 08:41:25] 2026-04-04 12:40:34,682 | INFO     | sum of deviations: -23303156377.000004
[2026-04-04 08:41:25] 2026-04-04 12:40:34,682 | INFO     | mean x: 1775302455.5
[2026-04-04 08:41:25] 2026-04-04 12:40:34,683 | INFO     | mean y: 2397076.107692308
[2026-04-04 08:41:25] 2026-04-04 12:40:34,683 | INFO     | intersect: 60732542497.7257
[2026-04-04 08:41:25] 2026-04-04 12:40:34,683 | INFO     | chi2: 0.0691621525187068
[2026-04-04 08:41:25] 2026-04-04 12:40:34,683 | INFO     | current chi2=0.0691621525187068 (change=22.167760803608157 %)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,683 | INFO     | left removable region: 20
[2026-04-04 08:41:25] 2026-04-04 12:40:34,683 | INFO     | sum of square deviations: 459366752.5
[2026-04-04 08:41:25] 2026-04-04 12:40:34,684 | INFO     | sum of deviations: -16913910572.499998
[2026-04-04 08:41:25] 2026-04-04 12:40:34,684 | INFO     | mean x: 1775302577.5
[2026-04-04 08:41:25] 2026-04-04 12:40:34,684 | INFO     | mean y: 2389773.6052631577
[2026-04-04 08:41:25] 2026-04-04 12:40:34,684 | INFO     | intersect: 65369134039.590744
[2026-04-04 08:41:25] 2026-04-04 12:40:34,684 | INFO     | chi2: 0.06479326243106864
[2026-04-04 08:41:25] 2026-04-04 12:40:34,684 | INFO     | current memory leak: -36.82 B/s (using 114 data points, chi2=0.06)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | could have reported an average CPU frequency of 3199 MHz (8 samples)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | ..............................
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . Timing measurements:
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . get job = 0 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . initial setup = 7 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . payload setup = 10 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . stage-in = 0 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . payload execution = 8520 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . stage-out = 0 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | . log creation = 0 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,685 | INFO     | ..............................
[2026-04-04 08:41:25] 2026-04-04 12:40:34,824 | INFO     | 
[2026-04-04 08:41:25] 2026-04-04 12:40:34,824 | INFO     | job summary report
[2026-04-04 08:41:25] 2026-04-04 12:40:34,824 | INFO     | --------------------------------------------------
[2026-04-04 08:41:25] 2026-04-04 12:40:34,824 | INFO     | PanDA job id: 7065845487
[2026-04-04 08:41:25] 2026-04-04 12:40:34,824 | INFO     | task id: 49263191
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | errors: (none)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | pilot state: finished 
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | transexitcode: 0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | exeerrorcode: 0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | exeerrordiag: 
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | exitcode: 0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | exitmsg: OK
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | cpuconsumptiontime: 33105 s
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | nevents: 400
[2026-04-04 08:41:25] 2026-04-04 12:40:34,825 | INFO     | neventsw: 0
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | pid: 81686
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | pgrp: 81686
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | corecount: 4
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | event service: False
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | sizes: {0: 2279826, 1: 2280287, 11: 2280287, 8534: 2308132, 8535: 2317160, 8538: 2317216, 8539: 2317538}
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | --------------------------------------------------
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | 
[2026-04-04 08:41:25] 2026-04-04 12:40:34,826 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/10
[2026-04-04 08:41:25] 2026-04-04 12:40:34,850 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,851 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,851 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,851 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,853 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,853 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-04 08:41:25] 2026-04-04 12:40:34,853 | INFO     | job 7065845487 has completed (purged errors)
[2026-04-04 08:41:25] 2026-04-04 12:40:34,853 | INFO     | overall cleanup function is called
[2026-04-04 08:41:25] 2026-04-04 12:40:35,862 | INFO     | --- collectZombieJob: --- 10, [81686]
[2026-04-04 08:41:25] 2026-04-04 12:40:35,862 | INFO     | zombie collector waiting for pid 81686
[2026-04-04 08:41:25] 2026-04-04 12:40:35,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-04 08:41:25] 2026-04-04 12:40:35,862 | INFO     | collected zombie processes
[2026-04-04 08:41:25] 2026-04-04 12:40:35,862 | INFO     | will attempt to kill all subprocesses of pid=81686
[2026-04-04 08:41:25] 2026-04-04 12:40:36,105 | INFO     | process IDs to be killed: [81686] (in reverse order)
[2026-04-04 08:41:25] 2026-04-04 12:40:36,175 | WARNING  | found no corresponding commands to process id(s)
[2026-04-04 08:41:25] 2026-04-04 12:40:36,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-04 08:41:25] 2026-04-04 12:40:36,183 | INFO     | did not find any defunct processes belonging to 81686
[2026-04-04 08:41:25] 2026-04-04 12:40:36,189 | INFO     | did not find any defunct processes belonging to 81686
[2026-04-04 08:41:25] 2026-04-04 12:40:36,189 | INFO     | ready for new job
[2026-04-04 08:41:25] 2026-04-04 12:40:36,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-04 08:41:25] 2026-04-04 12:40:36,191 | INFO     | **************************************
[2026-04-04 08:41:25] 2026-04-04 12:40:36,191 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-04 08:41:25] 2026-04-04 12:40:36,191 | INFO     | **************************************
[2026-04-04 08:41:25] 2026-04-04 12:40:36,192 | INFO     | 
[2026-04-04 08:41:25] 2026-04-04 12:40:36,194 | INFO     | architecture information:
[2026-04-04 08:41:25] 2026-04-04 12:40:36,194 | INFO     | executing command: cat /etc/os-release
[2026-04-04 08:41:25] 2026-04-04 12:40:36,215 | INFO     | cat /etc/os-release:
[2026-04-04 08:41:25] NAME="CentOS Linux"
[2026-04-04 08:41:25] VERSION="7 (Core)"
[2026-04-04 08:41:25] ID="centos"
[2026-04-04 08:41:25] ID_LIKE="rhel fedora"
[2026-04-04 08:41:25] VERSION_ID="7"
[2026-04-04 08:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-04 08:41:25] ANSI_COLOR="0;31"
[2026-04-04 08:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-04 08:41:25] HOME_URL="https://www.centos.org/"
[2026-04-04 08:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-04 08:41:25] 
[2026-04-04 08:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-04 08:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-04 08:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-04 08:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-04 08:41:25] 
[2026-04-04 08:41:25] 2026-04-04 12:40:36,216 | INFO     | **************************************
[2026-04-04 08:41:25] 2026-04-04 12:40:36,719 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/10
[2026-04-04 08:41:25] 2026-04-04 12:40:36,740 | INFO     | sufficient remaining disk space (405593391104 B)
[2026-04-04 08:41:25] 2026-04-04 12:40:36,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-04 08:41:25] 2026-04-04 12:40:36,741 | INFO     | current server update state: UPDATING_FINAL
[2026-04-04 08:41:25] 2026-04-04 12:40:36,741 | INFO     | update_server=False
[2026-04-04 08:41:25] 2026-04-04 12:40:36,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-04 08:41:25] 2026-04-04 12:40:36,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-04 08:41:25] 2026-04-04 12:40:36,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-04 08:41:25] 2026-04-04 12:40:37,065 | INFO     | all payload control threads have been joined
[2026-04-04 08:41:25] 2026-04-04 12:40:37,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-04 08:41:25] 2026-04-04 12:40:37,456 | INFO     | aborting loop
[2026-04-04 08:41:25] 2026-04-04 12:40:37,622 | INFO     | all job control threads have been joined
[2026-04-04 08:41:25] 2026-04-04 12:40:37,698 | INFO     | all data control threads have been joined
[2026-04-04 08:41:25] 2026-04-04 12:40:37,745 | INFO     | [job] retrieve thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:37,747 | INFO     | [job] queue monitor thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:37,991 | INFO     | [data] copytool_in thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,070 | INFO     | [payload] control thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,354 | INFO     | [payload] execute_payloads thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,462 | INFO     | [job] job monitor thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,627 | INFO     | [job] control thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,704 | INFO     | [data] control thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,747 | INFO     | [data] copytool_out thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,844 | INFO     | [job] validate thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:38,948 | INFO     | [payload] validate_post thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:39,070 | INFO     | [job] create_data_payload thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:39,165 | INFO     | [payload] validate_pre thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:39,281 | INFO     | [payload] failed_post thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:39,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-04 08:41:25] 2026-04-04 12:40:43,926 | INFO     | [data] queue_monitor thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:40:46,953 | INFO     | job.realtimelogging is not enabled
[2026-04-04 08:41:25] 2026-04-04 12:40:47,958 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-04 08:41:25] 2026-04-04 12:41:07,198 | INFO     | PID=77070 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-04 08:41:25] 2026-04-04 12:41:07,198 | INFO     | .. there are 4 such processes running
[2026-04-04 08:41:25] 2026-04-04 12:41:07,199 | INFO     | found 0 job(s) in 20 queues
[2026-04-04 08:41:25] 2026-04-04 12:41:07,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-04 08:41:25] 2026-04-04 12:41:07,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-04 08:41:25] 2026-04-04 12:41:18,369 | INFO     | [monitor] cgroup control has ended
[2026-04-04 08:41:25] 2026-04-04 12:41:20,425 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123332128298816)>', '<ExcThread(monitor, started 123331630053120)>']
[2026-04-04 08:41:25] 2026-04-04 12:41:21,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-04 08:41:25] 2026-04-04 12:41:21,267 | INFO     | [monitor] control thread has ended
[2026-04-04 08:41:25] 2026-04-04 12:41:25,450 | INFO     | all workflow threads have been joined
[2026-04-04 08:41:25] 2026-04-04 12:41:25,452 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-04 08:41:25] 2026-04-04 12:41:25,452 | INFO     | traces error code: 0
[2026-04-04 08:41:25] 2026-04-04 12:41:25,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-04 08:41:25] 2026-04-04 12:41:25,602 [wrapper] ==== pilot stdout END ====
[2026-04-04 08:41:25] 2026-04-04 12:41:25,606 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-04 08:41:25] 2026-04-04 12:41:25,609 [wrapper] pilotpid: 77070
[2026-04-04 08:41:25] 2026-04-04 12:41:25,613 [wrapper] Pilot exit status: 0
[2026-04-04 08:41:25] 2026-04-04 12:41:25,627 [wrapper] pandaids: 7065845487
[2026-04-04 08:41:25] 2026-04-04 12:41:25,673 [wrapper] cleanup supervisor_pilot  125996 77071
[2026-04-04 08:41:25] 2026-04-04 12:41:25,677 [wrapper] Test setup, not cleaning
[2026-04-04 08:41:25] 2026-04-04 12:41:25,681 [wrapper] apfmon messages muted
[2026-04-04 08:41:25] 2026-04-04 12:41:25,684 [wrapper] ==== wrapper stdout END ====
[2026-04-04 08:41:25] 2026-04-04 12:41:25,687 [wrapper] ==== wrapper stderr END ====
[2026-04-04 08:41:25]  *** Error codes and diagnostics ***
[2026-04-04 08:41:25]     "exeErrorCode": 0,
[2026-04-04 08:41:25]     "exeErrorDiag": "",
[2026-04-04 08:41:25]     "pilotErrorCode": 0,
[2026-04-04 08:41:25]     "pilotErrorDiag": "",
[2026-04-04 08:41:25]  *** Listing of results directory ***
[2026-04-04 08:41:25] total 410772
[2026-04-04 08:41:25] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 29 00:04 pilot3.tar.gz
[2026-04-04 08:41:25] -rwx------ 1 whitlerd whitlerd     36322 Mar 29 00:28 runpilot2-wrapper.sh
[2026-04-04 08:41:25] -rw-r--r-- 1 whitlerd whitlerd      5118 Mar 29 00:30 queuedata.json
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd       100 Apr  4 06:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-04 08:41:25] -rwxr-xr-x 1 whitlerd whitlerd      7986 Apr  4 06:17 run_atlas
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd       105 Apr  4 06:17 job.xml
[2026-04-04 08:41:25] -rw-r--r-- 2 whitlerd whitlerd 223516065 Apr  4 06:17 EVNT.49263189._000012.pool.root.1
[2026-04-04 08:41:25] drwxrwx--x 2 whitlerd whitlerd      4096 Apr  4 06:17 shared
[2026-04-04 08:41:25] -rw-r--r-- 2 whitlerd whitlerd    597531 Apr  4 06:17 input.tar.gz
[2026-04-04 08:41:25] -rw-r--r-- 2 whitlerd whitlerd     15845 Apr  4 06:17 start_atlas.sh
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr  4 06:17 boinc_setup_complete
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd      9208 Apr  4 06:17 init_data.xml
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr  4 06:17 boinc_lockfile
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd      2572 Apr  4 06:17 pandaJob.out
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd   1005173 Apr  4 06:17 agis_schedconf.cvmfs.json
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd   1511579 Apr  4 06:18 agis_ddmendpoints.agis.ALL.json
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd       437 Apr  4 06:18 workernode_map.json
[2026-04-04 08:41:25] drwx------ 5 whitlerd whitlerd      4096 Apr  4 06:18 pilot3
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd 190033427 Apr  4 08:40 HITS.49263191._000291.pool.root.1
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd      1038 Apr  4 08:40 memory_monitor_summary.json
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd       529 Apr  4 08:40 boinc_task_state.xml
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd    327921 Apr  4 08:40 log.49263191._000291.job.log.tgz.1
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd      6344 Apr  4 08:40 heartbeat.json
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd      8192 Apr  4 08:40 boinc_mmap_file
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd        27 Apr  4 08:40 wrapper_checkpoint.txt
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd        95 Apr  4 08:41 pilot_heartbeat.json
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd      4905 Apr  4 08:41 pilotlog.txt
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd   1238901 Apr  4 08:41 log.49263191._000291.job.log.1
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd       357 Apr  4 08:41 output.list
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd       620 Apr  4 08:41 runtime_log
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd   1587200 Apr  4 08:41 result.tar.gz
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd      9035 Apr  4 08:41 runtime_log.err
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd       651 Apr  4 08:41 modKDmDwwQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmzlJKDmwuzCgm.diag
[2026-04-04 08:41:25] -rw-rw-r-- 1 whitlerd whitlerd     21352 Apr  4 08:41 stderr.txt
[2026-04-04 08:41:25] HITS file was successfully produced:
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd 190033427 Apr  4 08:40 shared/HITS.pool.root.1
[2026-04-04 08:41:25]  *** Contents of shared directory: ***
[2026-04-04 08:41:25] total 406020
[2026-04-04 08:41:25] -rw-r--r-- 2 whitlerd whitlerd 223516065 Apr  4 06:17 ATLAS.root_0
[2026-04-04 08:41:25] -rw-r--r-- 2 whitlerd whitlerd    597531 Apr  4 06:17 input.tar.gz
[2026-04-04 08:41:25] -rw-r--r-- 2 whitlerd whitlerd     15845 Apr  4 06:17 start_atlas.sh
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd 190033427 Apr  4 08:40 HITS.pool.root.1
[2026-04-04 08:41:25] -rw------- 1 whitlerd whitlerd   1587200 Apr  4 08:41 result.tar.gz
08:41:27 (72876): run_atlas exited; CPU time 33276.402422
08:41:27 (72876): called boinc_finish(0)

</stderr_txt>
]]>

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