Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:47:08 (3655437): wrapper (7.7.26015): starting
10:47:08 (3655437): wrapper: running run_atlas (--nthreads 12)
[2026-04-05 10:47:08] Arguments: --nthreads 12
[2026-04-05 10:47:08] Threads: 12
[2026-04-05 10:47:08] Checking for CVMFS
[2026-04-05 10:47:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-05 10:47:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-05 10:47:09] Running cvmfs_config stat atlas.cern.ch
[2026-04-05 10:47:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-05 10:47:10] 2.13.3.0 1929 13966 56340 158109 0 188 3511957 4096000 1824 130560 0 15073947 99.962 981762 4457 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-04-05 10:47:10] CVMFS is ok
[2026-04-05 10:47:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 10:47:10] Checking for apptainer binary...
[2026-04-05 10:47:10] apptainer is not installed, using version from CVMFS
[2026-04-05 10:47:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 10:47:10] ryzen7
[2026-04-05 10:47:10] apptainer works
[2026-04-05 10:47:10] Set ATHENA_PROC_NUMBER=12
[2026-04-05 10:47:10] Set ATHENA_CORE_NUMBER=12
[2026-04-05 10:47:10] Starting ATLAS job with PandaID=7057257189
[2026-04-05 10:47:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-05 12:15:50]  *** The last 200 lines of the pilot log: ***
[2026-04-05 12:15:50]  guid=6ea08399-dae9-4ac4-8d14-84a8bd66ccc9
[2026-04-05 12:15:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-05 12:15:50]  is_altstaged=None
[2026-04-05 12:15:50]  is_tar=False
[2026-04-05 12:15:50]  lfn=log.49181106._000058.job.log.tgz.1
[2026-04-05 12:15:50]  mtime=0
[2026-04-05 12:15:50]  protocol_id=None
[2026-04-05 12:15:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-05 12:15:50]  replicas=None
[2026-04-05 12:15:50]  scope=mc23_13p6TeV
[2026-04-05 12:15:50]  status=None
[2026-04-05 12:15:50]  status_code=0
[2026-04-05 12:15:50]  storage_token=
[2026-04-05 12:15:50]  surl=/opt/boinc/instance_homes/boinc_31419/slots/2/PanDA_Pilot-7057257189/log.49181106._000058.job.log.tgz.1
[2026-04-05 12:15:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/67/log.49181106._000058.job.log.tgz.1
[2026-04-05 12:15:50]  workdir=None
[2026-04-05 12:15:50] ]
[2026-04-05 12:15:50] 2026-04-05 12:15:16,848 | INFO     | transferring file log.49181106._000058.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31419/slots/2/PanDA_Pilot-7057257189/log.49181106._000058.job.log.tgz.1 t
[2026-04-05 12:15:50] 2026-04-05 12:15:16,848 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31419/slots/2/PanDA_Pilot-7057257189/log.49181106._000058.job.log.tgz.1 /opt/boinc/instance_home
[2026-04-05 12:15:50] 2026-04-05 12:15:16,855 | INFO     | adding to output.list: log.49181106._000058.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/67/log.49181106._000058.job.log.tg
[2026-04-05 12:15:50] 2026-04-05 12:15:16,856 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-05 12:15:50] 2026-04-05 12:15:16,856 | INFO     | summary of transferred files:
[2026-04-05 12:15:50] 2026-04-05 12:15:16,856 | INFO     |  -- lfn=log.49181106._000058.job.log.tgz.1, status_code=0, status=transferred
[2026-04-05 12:15:50] 2026-04-05 12:15:16,856 | INFO     | stage-out finished correctly
[2026-04-05 12:15:50] 2026-04-05 12:15:17,362 | INFO     | time since job start (5264s) is within the limit (345600.0s)
[2026-04-05 12:15:50] 2026-04-05 12:15:18,648 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-05 12:15:50] 2026-04-05 12:15:18,688 | INFO     | job 7057257189 has state=finished
[2026-04-05 12:15:50] 2026-04-05 12:15:18,689 | INFO     | preparing for final server update for job 7057257189 in state='finished'
[2026-04-05 12:15:50] 2026-04-05 12:15:18,942 | INFO     | monitor loop #404: job 0:7057257189 is in state 'finished'
[2026-04-05 12:15:50] 2026-04-05 12:15:18,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,306 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,306 | INFO     | reading metadata from: /opt/boinc/instance_homes/boinc_31419/slots/2/PanDA_Pilot-7057257189/jobReport.json
[2026-04-05 12:15:50] 2026-04-05 12:15:19,307 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31419/slots/2/workernode_map.json
[2026-04-05 12:15:50] 2026-04-05 12:15:19,307 | INFO     | this job has now completed (state=finished)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,307 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,307 | INFO     | log transfer has been attempted: DONE
[2026-04-05 12:15:50] 2026-04-05 12:15:19,307 | INFO     | job 7057257189 has finished - writing final server update
[2026-04-05 12:15:50] 2026-04-05 12:15:19,307 | INFO     | total number of processed events: 400 (read)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,308 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/2/PanDA_Pilot-7057257189/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,308 | INFO     | extracted standard info from prmon json
[2026-04-05 12:15:50] 2026-04-05 12:15:19,308 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 12:15:50] 2026-04-05 12:15:19,308 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-05 12:15:50] 2026-04-05 12:15:19,308 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | fitting pss+swap vs Time
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | sum of square deviations: 152858680.0
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | sum of deviations: 1559706987.0000002
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | mean x: 1775388768.0
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | mean y: 2709845.9620253164
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | intersect: -18112625613.50238
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | chi2: 0.021294353359567236
[2026-04-05 12:15:50] 2026-04-05 12:15:19,309 | INFO     | current memory leak: 10.20 B/s (using 79 data points, chi2=0.02)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | could have reported an average CPU frequency of 4316 MHz (6 samples)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | ..............................
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . Timing measurements:
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . get job = 0 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . initial setup = 7 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . payload setup = 12 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . stage-in = 0 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . payload execution = 5235 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . stage-out = 0 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | . log creation = 0 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,310 | INFO     | ..............................
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | 
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | job summary report
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | --------------------------------------------------
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | PanDA job id: 7057257189
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | task id: 49181106
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | errors: (none)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | pilot state: finished 
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | transexitcode: 0
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | exeerrorcode: 0
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | exeerrordiag: 
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | exitcode: 0
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | exitmsg: OK
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | cpuconsumptiontime: 41352 s
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | nevents: 400
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | neventsw: 0
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | pid: 3664031
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | pgrp: 3664031
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | corecount: 12
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | event service: False
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | sizes: {0: 2279910, 1: 2280371, 11: 2280371, 5251: 2306872, 5252: 2306871, 5253: 2315999, 5255: 2316377}
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | --------------------------------------------------
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | 
[2026-04-05 12:15:50] 2026-04-05 12:15:19,348 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/2
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | job 7057257189 has completed (purged errors)
[2026-04-05 12:15:50] 2026-04-05 12:15:19,358 | INFO     | overall cleanup function is called
[2026-04-05 12:15:50] 2026-04-05 12:15:20,365 | INFO     | --- collectZombieJob: --- 10, [3664031]
[2026-04-05 12:15:50] 2026-04-05 12:15:20,366 | INFO     | zombie collector waiting for pid 3664031
[2026-04-05 12:15:50] 2026-04-05 12:15:20,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-05 12:15:50] 2026-04-05 12:15:20,366 | INFO     | collected zombie processes
[2026-04-05 12:15:50] 2026-04-05 12:15:20,366 | INFO     | will attempt to kill all subprocesses of pid=3664031
[2026-04-05 12:15:50] 2026-04-05 12:15:20,513 | INFO     | process IDs to be killed: [3664031] (in reverse order)
[2026-04-05 12:15:50] 2026-04-05 12:15:20,541 | WARNING  | found no corresponding commands to process id(s)
[2026-04-05 12:15:50] 2026-04-05 12:15:20,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-05 12:15:50] 2026-04-05 12:15:20,542 | INFO     | did not find any defunct processes belonging to 3664031
[2026-04-05 12:15:50] 2026-04-05 12:15:20,544 | INFO     | did not find any defunct processes belonging to 3664031
[2026-04-05 12:15:50] 2026-04-05 12:15:20,544 | INFO     | ready for new job
[2026-04-05 12:15:50] 2026-04-05 12:15:20,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-05 12:15:50] 2026-04-05 12:15:20,545 | INFO     | **************************************
[2026-04-05 12:15:50] 2026-04-05 12:15:20,545 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-05 12:15:50] 2026-04-05 12:15:20,545 | INFO     | **************************************
[2026-04-05 12:15:50] 2026-04-05 12:15:20,545 | INFO     | 
[2026-04-05 12:15:50] 2026-04-05 12:15:20,545 | INFO     | architecture information:
[2026-04-05 12:15:50] 2026-04-05 12:15:20,546 | INFO     | executing command: cat /etc/os-release
[2026-04-05 12:15:50] 2026-04-05 12:15:20,552 | INFO     | cat /etc/os-release:
[2026-04-05 12:15:50] NAME="CentOS Linux"
[2026-04-05 12:15:50] VERSION="7 (Core)"
[2026-04-05 12:15:50] ID="centos"
[2026-04-05 12:15:50] ID_LIKE="rhel fedora"
[2026-04-05 12:15:50] VERSION_ID="7"
[2026-04-05 12:15:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-05 12:15:50] ANSI_COLOR="0;31"
[2026-04-05 12:15:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-05 12:15:50] HOME_URL="https://www.centos.org/"
[2026-04-05 12:15:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-05 12:15:50] 
[2026-04-05 12:15:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-05 12:15:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-05 12:15:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-05 12:15:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-05 12:15:50] 
[2026-04-05 12:15:50] 2026-04-05 12:15:20,552 | INFO     | **************************************
[2026-04-05 12:15:50] 2026-04-05 12:15:21,055 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/2
[2026-04-05 12:15:50] 2026-04-05 12:15:21,063 | INFO     | sufficient remaining disk space (182192177152 B)
[2026-04-05 12:15:50] 2026-04-05 12:15:21,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-05 12:15:50] 2026-04-05 12:15:21,063 | INFO     | current server update state: UPDATING_FINAL
[2026-04-05 12:15:50] 2026-04-05 12:15:21,063 | INFO     | update_server=False
[2026-04-05 12:15:50] 2026-04-05 12:15:21,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-05 12:15:50] 2026-04-05 12:15:21,063 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-05 12:15:50] 2026-04-05 12:15:21,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-05 12:15:50] 2026-04-05 12:15:21,399 | INFO     | all data control threads have been joined
[2026-04-05 12:15:50] 2026-04-05 12:15:21,445 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-05 12:15:50] 2026-04-05 12:15:21,446 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-05 12:15:50] 2026-04-05 12:15:21,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-05 12:15:50] 2026-04-05 12:15:21,446 | INFO     | will abort loop
[2026-04-05 12:15:50] 2026-04-05 12:15:22,069 | INFO     | [job] queue monitor thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,070 | INFO     | [job] retrieve thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,150 | INFO     | job.realtimelogging is not enabled
[2026-04-05 12:15:50] 2026-04-05 12:15:22,267 | INFO     | all payload control threads have been joined
[2026-04-05 12:15:50] 2026-04-05 12:15:22,380 | INFO     | [payload] execute_payloads thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-05 12:15:50] 2026-04-05 12:15:22,405 | INFO     | [data] control thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,451 | INFO     | [job] job monitor thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,638 | INFO     | [job] validate thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,720 | INFO     | all job control threads have been joined
[2026-04-05 12:15:50] 2026-04-05 12:15:22,721 | INFO     | [job] create_data_payload thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:22,799 | INFO     | [payload] failed_post thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:23,115 | INFO     | [payload] validate_pre thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:23,156 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:23,273 | INFO     | [payload] control thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:23,281 | INFO     | [payload] validate_post thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:23,397 | INFO     | [data] copytool_in thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:23,725 | INFO     | [job] control thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:24,397 | INFO     | [data] copytool_out thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:25,070 | INFO     | [data] queue_monitor thread has finished
[2026-04-05 12:15:50] 2026-04-05 12:15:40,850 | INFO     | [monitor] cgroup control has ended
[2026-04-05 12:15:50] 2026-04-05 12:15:42,468 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140554637694784)>', '<ExcThread(monitor, started 140553995933440)>']
[2026-04-05 12:15:50] 2026-04-05 12:15:47,493 | INFO     | all workflow threads have been joined
[2026-04-05 12:15:50] 2026-04-05 12:15:47,493 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-05 12:15:50] 2026-04-05 12:15:47,493 | INFO     | traces error code: 0
[2026-04-05 12:15:50] 2026-04-05 12:15:47,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-05 12:15:50] 2026-04-05 12:15:50,491 | INFO     | PID=3659544 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-05 12:15:50] 2026-04-05 12:15:50,491 | INFO     | found 0 job(s) in 20 queues
[2026-04-05 12:15:50] 2026-04-05 12:15:50,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-05 12:15:50] 2026-04-05 12:15:50,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-05 12:15:50] 2026-04-05 12:15:50,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-05 12:15:50] 2026-04-05 12:15:50,492 | INFO     | [monitor] control thread has ended
[2026-04-05 12:15:50] 2026-04-05 12:15:50,530 [wrapper] ==== pilot stdout END ====
[2026-04-05 12:15:50] 2026-04-05 12:15:50,532 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-05 12:15:50] 2026-04-05 12:15:50,533 [wrapper] pilotpid: 3659544
[2026-04-05 12:15:50] 2026-04-05 12:15:50,534 [wrapper] Pilot exit status: 0
[2026-04-05 12:15:50] 2026-04-05 12:15:50,539 [wrapper] pandaids: 7057257189
[2026-04-05 12:15:50] 2026-04-05 12:15:50,549 [wrapper] cleanup supervisor_pilot 3669725 3659545
[2026-04-05 12:15:50] 2026-04-05 12:15:50,550 [wrapper] Test setup, not cleaning
[2026-04-05 12:15:50] 2026-04-05 12:15:50,552 [wrapper] apfmon messages muted
[2026-04-05 12:15:50] 2026-04-05 12:15:50,553 [wrapper] ==== wrapper stdout END ====
[2026-04-05 12:15:50] 2026-04-05 12:15:50,554 [wrapper] ==== wrapper stderr END ====
[2026-04-05 12:15:50]  *** Error codes and diagnostics ***
[2026-04-05 12:15:50]     "exeErrorCode": 0,
[2026-04-05 12:15:50]     "exeErrorDiag": "",
[2026-04-05 12:15:50]     "pilotErrorCode": 0,
[2026-04-05 12:15:50]     "pilotErrorDiag": "",
[2026-04-05 12:15:50]  *** Listing of results directory ***
[2026-04-05 12:15:50] total 440332
[2026-04-05 12:15:50] -rw-r--r-- 1 boinc boinc    585013 M&#195;&#164;r 17 12:21 pilot3.tar.gz
[2026-04-05 12:15:50] -rwx------ 1 boinc boinc     36322 M&#195;&#164;r 17 12:26 runpilot2-wrapper.sh
[2026-04-05 12:15:50] -rw-r--r-- 1 boinc boinc      5111 M&#195;&#164;r 17 12:28 queuedata.json
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc       100 Apr  5 10:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-05 12:15:50] -rwxr-xr-x 1 boinc boinc      7986 Apr  5 10:47 run_atlas
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc       105 Apr  5 10:47 job.xml
[2026-04-05 12:15:50] -rw-r--r-- 2 boinc boinc 237610367 Apr  5 10:47 EVNT.49134476._000003.pool.root.1
[2026-04-05 12:15:50] -rw-r--r-- 2 boinc boinc     15845 Apr  5 10:47 start_atlas.sh
[2026-04-05 12:15:50] drwxrwx--x 2 boinc boinc      4096 Apr  5 10:47 shared
[2026-04-05 12:15:50] -rw-r--r-- 2 boinc boinc    597547 Apr  5 10:47 input.tar.gz
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc      6479 Apr  5 10:47 init_data.xml
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc         0 Apr  5 10:47 boinc_setup_complete
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc         0 Apr  5 10:47 boinc_lockfile
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc      2633 Apr  5 10:47 pandaJob.out
[2026-04-05 12:15:50] -rw------- 1 boinc boinc   1005096 Apr  5 10:47 agis_schedconf.cvmfs.json
[2026-04-05 12:15:50] -rw------- 1 boinc boinc   1511579 Apr  5 10:47 agis_ddmendpoints.agis.ALL.json
[2026-04-05 12:15:50] -rw------- 1 boinc boinc       414 Apr  5 10:47 workernode_map.json
[2026-04-05 12:15:50] drwx------ 5 boinc boinc      4096 Apr  5 10:47 pilot3
[2026-04-05 12:15:50] -rw------- 1 boinc boinc 206990237 Apr  5 12:14 HITS.49181106._000058.pool.root.1
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc       529 Apr  5 12:15 boinc_task_state.xml
[2026-04-05 12:15:50] -rw------- 1 boinc boinc      1015 Apr  5 12:15 memory_monitor_summary.json
[2026-04-05 12:15:50] -rw------- 1 boinc boinc        95 Apr  5 12:15 pilot_heartbeat.json
[2026-04-05 12:15:50] -rw------- 1 boinc boinc    390556 Apr  5 12:15 log.49181106._000058.job.log.tgz.1
[2026-04-05 12:15:50] -rw------- 1 boinc boinc      6261 Apr  5 12:15 heartbeat.json
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc      8192 Apr  5 12:15 boinc_mmap_file
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc        27 Apr  5 12:15 wrapper_checkpoint.txt
[2026-04-05 12:15:50] -rw------- 1 boinc boinc       747 Apr  5 12:15 pilotlog.txt
[2026-04-05 12:15:50] -rw------- 1 boinc boinc    792131 Apr  5 12:15 log.49181106._000058.job.log.1
[2026-04-05 12:15:50] -rw------- 1 boinc boinc       357 Apr  5 12:15 output.list
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc       620 Apr  5 12:15 runtime_log
[2026-04-05 12:15:50] -rw------- 1 boinc boinc   1198080 Apr  5 12:15 result.tar.gz
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc      9156 Apr  5 12:15 runtime_log.err
[2026-04-05 12:15:50] -rw------- 1 boinc boinc       648 Apr  5 12:15 1hvLDm0fiM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoP0LDmLdeIrm.diag
[2026-04-05 12:15:50] -rw-rw-r-- 1 boinc boinc     21245 Apr  5 12:15 stderr.txt
[2026-04-05 12:15:50] HITS file was successfully produced:
[2026-04-05 12:15:50] -rw------- 1 boinc boinc 206990237 Apr  5 12:14 shared/HITS.pool.root.1
[2026-04-05 12:15:50]  *** Contents of shared directory: ***
[2026-04-05 12:15:50] total 435964
[2026-04-05 12:15:50] -rw-r--r-- 2 boinc boinc 237610367 Apr  5 10:47 ATLAS.root_0
[2026-04-05 12:15:50] -rw-r--r-- 2 boinc boinc     15845 Apr  5 10:47 start_atlas.sh
[2026-04-05 12:15:50] -rw-r--r-- 2 boinc boinc    597547 Apr  5 10:47 input.tar.gz
[2026-04-05 12:15:50] -rw------- 1 boinc boinc 206990237 Apr  5 12:14 HITS.pool.root.1
[2026-04-05 12:15:50] -rw------- 1 boinc boinc   1198080 Apr  5 12:15 result.tar.gz
12:15:52 (3655437): run_atlas exited; CPU time 41367.265884
12:15:52 (3655437): called boinc_finish(0)

</stderr_txt>
]]>

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