Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-04-04 13:04:25 (17312): vboxwrapper version 26210
2026-04-04 13:04:25 (17312): BOINC client version: 8.0.2
2026-04-04 13:04:26 (17312): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2026-04-04 13:04:26 (17312): Successfully copied 'init_data.xml' to the shared directory.
2026-04-04 13:04:26 (17312): Create VM. (boinc_7c12103f4b337888, slot#0)
2026-04-04 13:04:27 (17312): Setting Memory Size for VM. (4400MB)
2026-04-04 13:04:27 (17312): Setting CPU Count for VM. (4)
2026-04-04 13:04:27 (17312): Setting Chipset Options for VM.
2026-04-04 13:04:28 (17312): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-04-04 13:04:28 (17312): Setting Boot Options for VM.
2026-04-04 13:04:28 (17312): Setting Network Configuration for NAT. (Driver: virtio)
2026-04-04 13:04:29 (17312): Enabling VM Network Access.
2026-04-04 13:04:29 (17312): Disabling USB Support for VM.
2026-04-04 13:04:29 (17312): Disabling COM Port Support for VM.
2026-04-04 13:04:30 (17312): Disabling LPT Port Support for VM.
2026-04-04 13:04:30 (17312): Disabling Audio Support for VM.
2026-04-04 13:04:30 (17312): Disabling Clipboard Support for VM.
2026-04-04 13:04:30 (17312): Disabling Drag and Drop Support for VM.
2026-04-04 13:04:31 (17312): Adding storage controller(s) to VM.
2026-04-04 13:04:31 (17312): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-04-04 13:04:33 (17312): Adding VirtualBox Guest Additions to VM.
2026-04-04 13:04:33 (17312): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-04-04 13:04:33 (17312): forwarding host port 57156 to guest port 80
2026-04-04 13:04:34 (17312): Enabling remote desktop for VM.
2026-04-04 13:04:34 (17312): Required extension pack not installed, remote desktop not enabled.
2026-04-04 13:04:34 (17312): Enabling shared directory for VM.
2026-04-04 13:04:34 (17312): Starting VM using VBoxManage interface. (boinc_7c12103f4b337888, slot#0)
2026-04-04 13:04:40 (17312): Successfully started VM. (PID = '19560')
2026-04-04 13:04:40 (17312): Reporting VM Process ID to BOINC.
2026-04-04 13:04:40 (17312): Guest Log: BIOS: VirtualBox 7.1.4
2026-04-04 13:04:40 (17312): Guest Log: CPUID EDX: 0x178bfbff
2026-04-04 13:04:40 (17312): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-04-04 13:04:40 (17312): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-04-04 13:04:40 (17312): VM state change detected. (old = 'poweredoff', new = 'running')
2026-04-04 13:04:40 (17312): Detected: Web Application Enabled (http://localhost:57156)
2026-04-04 13:04:40 (17312): Preference change detected
2026-04-04 13:04:40 (17312): Setting CPU throttle for VM. (100%)
2026-04-04 13:04:40 (17312): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-04 13:04:42 (17312): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-04-04 13:04:42 (17312): Guest Log: BIOS: Booting from Hard Disk...
2026-04-04 13:04:45 (17312): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-04-04 13:04:45 (17312): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-04-04 13:04:45 (17312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-04-04 13:04:52 (17312): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-04-04 13:04:52 (17312): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-04-04 13:04:58 (17312): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000227 main     Log opened 2026-04-04T13:04:57.114124000Z
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000404 main     OS Product: Linux
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000465 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000526 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000572 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000574 main     Process ID: 1312
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.000575 main     Package type: LINUX_64BITS_GENERIC
2026-04-04 13:04:58 (17312): Guest Log: 00:00:00.002400 main     5.2.32 r132073 started. Verbose level = 0
2026-04-04 13:04:59 (17312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-04-04 13:04:59 (17312): Guest Log: [INFO] Mounting shared directory
2026-04-04 13:04:59 (17312): Guest Log: [INFO] Checking for init_data.xml
2026-04-04 13:05:08 (17312): Guest Log: 00:00:10.007689 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 989 014 669 000ns (GuestNow=1 775 271 908 105 942 000 ns GuestLast=1 775 307 897 120 611 000 ns fSetTimeLastLoop=true )
2026-04-04 13:05:09 (17312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-04-04 13:05:09 (17312): Guest Log: [INFO] Detected branch: prod
2026-04-04 13:05:10 (17312): Guest Log: This is the prod version of the ATLAS job wrapper
2026-04-04 13:05:10 (17312): Guest Log: Copying input files
2026-04-04 13:05:11 (17312): Guest Log: Copied input files into RunAtlas.
2026-04-04 13:05:11 (17312): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-04-04 13:05:11 (17312): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-04-04 13:05:11 (17312): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-04-04 13:05:11 (17312): Guest Log: Further information can be found at the LHC@home message board.
2026-04-04 13:05:22 (17312): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-04-04 13:05:23 (17312): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-04-04 13:05:23 (17312): Guest Log: 2.6.3.0 1607 0 32180 158062 4 1 3117755 4096001 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-04-04 13:05:25 (17312): Guest Log: copied the webapp to /var/www
2026-04-04 13:05:25 (17312): Guest Log: ATHENA_PROC_NUMBER=4
2026-04-04 13:05:25 (17312): Guest Log: ATHENA_CORE_NUMBER=4
2026-04-04 13:05:26 (17312): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-04-04 13:05:26 (17312): Guest Log:  *** Starting ATLAS job. (PandaID=7065223496 taskID=49178071) ***
2026-04-04 14:44:44 (17312): Status Report: Elapsed Time: '6000.000000'
2026-04-04 14:44:44 (17312): Status Report: CPU Time: '19544.515625'
2026-04-04 16:24:55 (17312): Status Report: Elapsed Time: '12000.000000'
2026-04-04 16:24:55 (17312): Status Report: CPU Time: '43338.187500'
2026-04-04 18:05:00 (17312): Status Report: Elapsed Time: '18000.000000'
2026-04-04 18:05:00 (17312): Status Report: CPU Time: '67108.859375'
2026-04-04 19:45:05 (17312): Status Report: Elapsed Time: '24000.000000'
2026-04-04 19:45:05 (17312): Status Report: CPU Time: '90900.421875'
2026-04-04 21:25:12 (17312): Status Report: Elapsed Time: '30000.000000'
2026-04-04 21:25:12 (17312): Status Report: CPU Time: '114685.203125'
2026-04-04 23:05:17 (17312): Status Report: Elapsed Time: '36000.000000'
2026-04-04 23:05:17 (17312): Status Report: CPU Time: '138486.359375'
2026-04-05 00:09:50 (17312): Guest Log:  *** Job finished ***
2026-04-05 00:09:50 (17312): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:36,679 | INFO     | all workflow threads have been joined
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:36,679 | INFO     | end of generic workflow (traces error code: 0)
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:36,680 | INFO     | traces error code: 0
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:36,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,224 | INFO     | PID=6030 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,224 | INFO     | found 0 job(s) in 20 queues
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,225 | INFO     | [monitor] control thread has ended
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,330 [wrapper] ==== pilot stdout END ====
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,336 [wrapper] ==== wrapper stdout RESUME ====
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,344 [wrapper] pilotpid: 6030
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,351 [wrapper] Pilot exit status: 0
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,699 [wrapper] pandaids: 7065223496
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,742 [wrapper] cleanup supervisor_pilot  2324 6031
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,755 [wrapper] Test setup, not cleaning
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,763 [wrapper] apfmon messages muted
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,770 [wrapper] ==== wrapper stdout END ====
2026-04-05 00:09:50 (17312): Guest Log: 2026-04-04 14:09:48,777 [wrapper] ==== wrapper stderr END ====
2026-04-05 00:09:50 (17312): Guest Log:  *** Error codes and diagnostics ***
2026-04-05 00:09:50 (17312): Guest Log:     "exeErrorCode": 0,
2026-04-05 00:09:50 (17312): Guest Log:     "exeErrorDiag": "",
2026-04-05 00:09:50 (17312): Guest Log:     "pilotErrorCode": 0,
2026-04-05 00:09:50 (17312): Guest Log:     "pilotErrorDiag": "",
2026-04-05 00:09:50 (17312): Guest Log:  *** Listing of results directory ***
2026-04-05 00:09:50 (17312): Guest Log: total 255616
2026-04-05 00:09:50 (17312): Guest Log: -rw-r--r--. 1 atlas atlas    585013 Mar 25 11:51 pilot3.tar.gz
2026-04-05 00:09:50 (17312): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Mar 25 11:53 queuedata.json
2026-04-05 00:09:50 (17312): Guest Log: -rwx------. 1 atlas atlas     36322 Mar 25 11:53 runpilot2-wrapper.sh
2026-04-05 00:09:50 (17312): Guest Log: -rwxr-xr-x. 1 atlas atlas      9321 Apr  4 03:05 init_data.xml
2026-04-05 00:09:50 (17312): Guest Log: -rwxr-xr-x. 1 atlas atlas    597552 Apr  4 03:05 input.tar.gz
2026-04-05 00:09:50 (17312): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Apr  4 03:05 start_atlas.sh
2026-04-05 00:09:50 (17312): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 03:05 EVNT.49127995._000003.pool.root.1 -> /data/./ATLAS.root_0
2026-04-05 00:09:50 (17312): Guest Log: -rw-r--r--. 1 atlas atlas      2639 Apr  4 03:05 pandaJob.out
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas   1005173 Apr  4 03:08 agis_schedconf.cvmfs.json
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas       410 Apr  4 03:08 workernode_map.json
2026-04-05 00:09:50 (17312): Guest Log: drwx------. 5 atlas atlas      4096 Apr  4 03:08 pilot3
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas 245528130 Apr  4 14:08 HITS.49178071._000203.pool.root.1
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas      1028 Apr  4 14:09 memory_monitor_summary.json
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas   1511579 Apr  4 14:09 agis_ddmendpoints.agis.ALL.json
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas    736767 Apr  4 14:09 log.49178071._000203.job.log.tgz.1
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas      6308 Apr  4 14:09 heartbeat.json
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas        95 Apr  4 14:09 pilot_heartbeat.json
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas       744 Apr  4 14:09 pilotlog.txt
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas   5444083 Apr  4 14:09 log.49178071._000203.job.log.1
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas       357 Apr  4 14:09 output.list
2026-04-05 00:09:50 (17312): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  4 14:09 runtime_log
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas   6195200 Apr  4 14:09 result.tar.gz
2026-04-05 00:09:50 (17312): Guest Log: -rw-r--r--. 1 atlas atlas      8709 Apr  4 14:09 runtime_log.err
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas       649 Apr  4 14:09 cGVMDmlybP9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYLCMDmSgYEln.diag
2026-04-05 00:09:50 (17312): Guest Log: Looking for outputfile HITS.49178071._000203.pool.root.1
2026-04-05 00:09:50 (17312): Guest Log: HITS file was successfully produced
2026-04-05 00:09:50 (17312): Guest Log: -rw-------. 1 atlas atlas 245528130 Apr  4 14:08 /home/atlas/RunAtlas/HITS.49178071._000203.pool.root.1
2026-04-05 00:09:51 (17312): Guest Log: Successfully finished the ATLAS job!
2026-04-05 00:09:51 (17312): Guest Log: Copying the results back to the shared directory!
2026-04-05 00:09:51 (17312): Guest Log:  *** Contents of shared directory: ***
2026-04-05 00:09:52 (17312): Guest Log: total 478804
2026-04-05 00:09:52 (17312): Guest Log: -rwxrwxrwx. 1 root root 237939006 Apr  4 03:04 ATLAS.root_0
2026-04-05 00:09:52 (17312): Guest Log: -rwxrwxrwx. 1 root root 245528130 Apr  4 14:09 HITS.pool.root.1
2026-04-05 00:09:52 (17312): Guest Log: -rwxrwxrwx. 1 root root      9321 Apr  4 03:04 init_data.xml
2026-04-05 00:09:52 (17312): Guest Log: -rwxrwxrwx. 1 root root    597552 Apr  2 18:24 input.tar.gz
2026-04-05 00:09:52 (17312): Guest Log: -rwxrwxrwx. 1 root root   6195200 Apr  4 14:09 result.tar.gz
2026-04-05 00:09:52 (17312): Guest Log: -rwxrwxrwx. 1 root root     15845 Apr  2 18:24 start_atlas.sh
2026-04-05 00:09:52 (17312): Guest Log:  *** Success! Shutting down the machine. ***
2026-04-05 00:09:52 (17312): VM Completion File Detected.
2026-04-05 00:09:52 (17312): Powering off VM.
2026-04-05 00:09:53 (17312): Successfully stopped VM.
2026-04-05 00:09:53 (17312): Deregistering VM. (boinc_7c12103f4b337888, slot#0)
2026-04-05 00:09:53 (17312): Removing network bandwidth throttle group from VM.
2026-04-05 00:09:54 (17312): Removing VM from VirtualBox.
2026-04-05 00:09:59 (17312): called boinc_finish(0)

</stderr_txt>
]]>

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