Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:02:05 (2895801): wrapper (7.7.26015): starting
14:02:05 (2895801): wrapper: running run_atlas (--nthreads 9)
[2026-04-02 14:02:05] Arguments: --nthreads 9
[2026-04-02 14:02:05] Threads: 9
[2026-04-02 14:02:05] Checking for CVMFS
[2026-04-02 14:02:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-02 14:02:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-02 14:02:05] Running cvmfs_config stat atlas.cern.ch
[2026-04-02 14:02:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-02 14:02:06] 2.13.3.0 12525 213128 486360 158010 2 446 34072920 40960000 18630 16776704 0 1327957590 99.722 1067754935 33990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-02 14:02:06] CVMFS is ok
[2026-04-02 14:02:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-02 14:02:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-02 14:02:06] Further information can be found at the LHC@home message board.
[2026-04-02 14:02:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-02 14:02:06] Checking for apptainer binary...
[2026-04-02 14:02:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-02 14:02:06] Running /usr/bin/apptainer --version
[2026-04-02 14:02:06] apptainer version 1.4.5-2.el9
[2026-04-02 14:02:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-02 14:02:06] c7-4-30.aglt2.org
[2026-04-02 14:02:06] apptainer works
[2026-04-02 14:02:06] Set ATHENA_PROC_NUMBER=9
[2026-04-02 14:02:06] Set ATHENA_CORE_NUMBER=9
[2026-04-02 14:02:06] Starting ATLAS job with PandaID=7065223010
[2026-04-02 14:02:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:09:35 (578471): wrapper (7.7.26015): starting
22:09:35 (578471): wrapper: running run_atlas (--nthreads 8)
[2026-04-02 22:09:35] Arguments: --nthreads 8
[2026-04-02 22:09:35] Threads: 8
[2026-04-02 22:09:35] This job has been restarted, cleaning up previous attempt
[2026-04-02 22:09:35] Checking for CVMFS
[2026-04-02 22:09:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-02 22:09:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-02 22:09:35] Running cvmfs_config stat atlas.cern.ch
[2026-04-02 22:09:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-02 22:09:36] 2.13.3.0 12525 213616 476044 158023 0 117 26932816 40960000 22954 16776704 0 1330715979 99.721 1071060401 34009 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-02 22:09:36] CVMFS is ok
[2026-04-02 22:09:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-02 22:09:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-02 22:09:36] Further information can be found at the LHC@home message board.
[2026-04-02 22:09:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-02 22:09:36] Checking for apptainer binary...
[2026-04-02 22:09:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-02 22:09:36] Running /usr/bin/apptainer --version
[2026-04-02 22:09:36] apptainer version 1.4.5-2.el9
[2026-04-02 22:09:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-02 22:09:37] c7-4-30.aglt2.org
[2026-04-02 22:09:37] apptainer works
[2026-04-02 22:09:37] Set ATHENA_PROC_NUMBER=8
[2026-04-02 22:09:37] Set ATHENA_CORE_NUMBER=8
[2026-04-02 22:09:37] Starting ATLAS job with PandaID=7065223010
[2026-04-02 22:09:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-03 09:35:21]  *** The last 200 lines of the pilot log: ***
[2026-04-03 09:35:21] 2026-04-03 13:34:42,435 | INFO     | extracted standard info from prmon json
[2026-04-03 09:35:21] 2026-04-03 13:34:42,435 | INFO     | extracted standard memory fields from prmon json
[2026-04-03 09:35:21] 2026-04-03 13:34:42,436 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-03 09:35:21] 2026-04-03 13:34:42,436 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-03 09:35:21] 2026-04-03 13:34:42,436 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-03 09:35:21] 2026-04-03 13:34:42,447 | INFO     | fitting pss+swap vs Time
[2026-04-03 09:35:21] 2026-04-03 13:34:42,448 | INFO     | sum of square deviations: 94519572285.00119
[2026-04-03 09:35:21] 2026-04-03 13:34:42,460 | INFO     | sum of deviations: 310171288087.80536
[2026-04-03 09:35:21] 2026-04-03 13:34:42,460 | INFO     | mean x: 1775202743.0861812
[2026-04-03 09:35:21] 2026-04-03 13:34:42,460 | INFO     | mean y: 2520720.7102526003
[2026-04-03 09:35:21] 2026-04-03 13:34:42,460 | INFO     | intersect: -5822906840.258733
[2026-04-03 09:35:21] 2026-04-03 13:34:42,461 | INFO     | chi2: 1.7248846321554892
[2026-04-03 09:35:21] 2026-04-03 13:34:42,462 | INFO     | sum of square deviations: 92428518209.96524
[2026-04-03 09:35:21] 2026-04-03 13:34:42,473 | INFO     | sum of deviations: 303665514327.1074
[2026-04-03 09:35:21] 2026-04-03 13:34:42,474 | INFO     | mean x: 1775202590.5868263
[2026-04-03 09:35:21] 2026-04-03 13:34:42,474 | INFO     | mean y: 2520246.239520958
[2026-04-03 09:35:21] 2026-04-03 13:34:42,474 | INFO     | intersect: -5829746873.750315
[2026-04-03 09:35:21] 2026-04-03 13:34:42,475 | INFO     | chi2: 1.724942731574555
[2026-04-03 09:35:21] 2026-04-03 13:34:42,475 | INFO     | current chi2=1.724942731574555 (change=-0.003368307536786197 %)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,475 | INFO     | right removable region: 667
[2026-04-03 09:35:21] 2026-04-03 13:34:42,476 | INFO     | sum of square deviations: 92428482829.96526
[2026-04-03 09:35:21] 2026-04-03 13:34:42,488 | INFO     | sum of deviations: 186946255298.40714
[2026-04-03 09:35:21] 2026-04-03 13:34:42,488 | INFO     | mean x: 1775202895.5868263
[2026-04-03 09:35:21] 2026-04-03 13:34:42,489 | INFO     | mean y: 2529682.1826347304
[2026-04-03 09:35:21] 2026-04-03 13:34:42,489 | INFO     | intersect: -3588003490.7502346
[2026-04-03 09:35:21] 2026-04-03 13:34:42,490 | INFO     | chi2: 0.03869658741740922
[2026-04-03 09:35:21] 2026-04-03 13:34:42,490 | INFO     | current chi2=0.03869658741740922 (change=97.75656952957762 %)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,491 | INFO     | sum of square deviations: 90368504350.09988
[2026-04-03 09:35:21] 2026-04-03 13:34:42,502 | INFO     | sum of deviations: 169196025179.08585
[2026-04-03 09:35:21] 2026-04-03 13:34:42,502 | INFO     | mean x: 1775203048.0859728
[2026-04-03 09:35:21] 2026-04-03 13:34:42,503 | INFO     | mean y: 2530992.665158371
[2026-04-03 09:35:21] 2026-04-03 13:34:42,503 | INFO     | intersect: -3321163493.3951526
[2026-04-03 09:35:21] 2026-04-03 13:34:42,504 | INFO     | chi2: 0.010374067134404774
[2026-04-03 09:35:21] 2026-04-03 13:34:42,504 | INFO     | current chi2=0.010374067134404774 (change=73.1912609695976 %)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,505 | INFO     | sum of square deviations: 88339323337.56212
[2026-04-03 09:35:21] 2026-04-03 13:34:42,514 | INFO     | sum of deviations: 163380321668.89676
[2026-04-03 09:35:21] 2026-04-03 13:34:42,514 | INFO     | mean x: 1775203200.586626
[2026-04-03 09:35:21] 2026-04-03 13:34:42,515 | INFO     | mean y: 2531429.624620061
[2026-04-03 09:35:21] 2026-04-03 13:34:42,515 | INFO     | intersect: -3280641442.6785016
[2026-04-03 09:35:21] 2026-04-03 13:34:42,515 | INFO     | chi2: 0.01002953200142785
[2026-04-03 09:35:21] 2026-04-03 13:34:42,516 | INFO     | current chi2=0.01002953200142785 (change=3.3211191764346797 %)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,516 | INFO     | left removable region: 30
[2026-04-03 09:35:21] 2026-04-03 13:34:42,517 | INFO     | sum of square deviations: 80148304977.89925
[2026-04-03 09:35:21] 2026-04-03 13:34:42,527 | INFO     | sum of deviations: 146213012007.05182
[2026-04-03 09:35:21] 2026-04-03 13:34:42,527 | INFO     | mean x: 1775203475.0894818
[2026-04-03 09:35:21] 2026-04-03 13:34:42,528 | INFO     | mean y: 2531797.1569858715
[2026-04-03 09:35:21] 2026-04-03 13:34:42,528 | INFO     | intersect: -3235937776.089649
[2026-04-03 09:35:21] 2026-04-03 13:34:42,529 | INFO     | chi2: 0.009672670502273686
[2026-04-03 09:35:21] 2026-04-03 13:34:42,529 | INFO     | current memory leak: 1.82 B/s (using 637 data points, chi2=0.01)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,530 | INFO     | could have reported an average CPU frequency of 3023 MHz (26 samples)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | ..............................
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . Timing measurements:
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . get job = 0 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . initial setup = 2 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . payload setup = 28 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . stage-in = 0 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . payload execution = 41038 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,531 | INFO     | . stage-out = 2 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,532 | INFO     | . log creation = 0 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,532 | INFO     | ..............................
[2026-04-03 09:35:21] 2026-04-03 13:34:42,616 | INFO     | 
[2026-04-03 09:35:21] 2026-04-03 13:34:42,617 | INFO     | job summary report
[2026-04-03 09:35:21] 2026-04-03 13:34:42,617 | INFO     | --------------------------------------------------
[2026-04-03 09:35:21] 2026-04-03 13:34:42,617 | INFO     | PanDA job id: 7065223010
[2026-04-03 09:35:21] 2026-04-03 13:34:42,618 | INFO     | task id: 49178071
[2026-04-03 09:35:21] 2026-04-03 13:34:42,618 | INFO     | errors: (none)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,618 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-03 09:35:21] 2026-04-03 13:34:42,618 | INFO     | pilot state: finished 
[2026-04-03 09:35:21] 2026-04-03 13:34:42,618 | INFO     | transexitcode: 0
[2026-04-03 09:35:21] 2026-04-03 13:34:42,618 | INFO     | exeerrorcode: 0
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | exeerrordiag: 
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | exitcode: 0
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | exitmsg: OK
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | cpuconsumptiontime: 107160 s
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | nevents: 400
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | neventsw: 0
[2026-04-03 09:35:21] 2026-04-03 13:34:42,619 | INFO     | pid: 611906
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | pgrp: 611906
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | corecount: 8
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | event service: False
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | sizes: {0: 2280277, 1: 2280277, 41071: 2323418, 41073: 2332416, 41075: 2332472, 41076: 2332666}
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | --------------------------------------------------
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | 
[2026-04-03 09:35:21] 2026-04-03 13:34:42,620 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-04-03 09:35:21] 2026-04-03 13:34:42,644 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,647 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,647 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,647 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-03 09:35:21] 2026-04-03 13:34:42,647 | INFO     | job 7065223010 has completed (purged errors)
[2026-04-03 09:35:21] 2026-04-03 13:34:42,647 | INFO     | overall cleanup function is called
[2026-04-03 09:35:21] 2026-04-03 13:34:43,058 | WARNING  | process 611906 can no longer be monitored (due to stat problems) - aborting
[2026-04-03 09:35:21] 2026-04-03 13:34:43,407 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-03 09:35:21] 2026-04-03 13:34:43,652 | INFO     | --- collectZombieJob: --- 10, [611906]
[2026-04-03 09:35:21] 2026-04-03 13:34:43,653 | INFO     | zombie collector waiting for pid 611906
[2026-04-03 09:35:21] 2026-04-03 13:34:43,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-03 09:35:21] 2026-04-03 13:34:43,654 | INFO     | collected zombie processes
[2026-04-03 09:35:21] 2026-04-03 13:34:43,654 | INFO     | will attempt to kill all subprocesses of pid=611906
[2026-04-03 09:35:21] 2026-04-03 13:34:44,190 | INFO     | number of running child processes to parent process 611906: 1
[2026-04-03 09:35:21] 2026-04-03 13:34:44,191 | INFO     | maximum number of monitored processes: 6
[2026-04-03 09:35:21] 2026-04-03 13:34:44,191 | INFO     | aborting job monitoring since job object (job id=7065223010) has expired
[2026-04-03 09:35:21] 2026-04-03 13:34:44,408 | INFO     | process IDs to be killed: [611906] (in reverse order)
[2026-04-03 09:35:21] 2026-04-03 13:34:44,573 | WARNING  | found no corresponding commands to process id(s)
[2026-04-03 09:35:21] 2026-04-03 13:34:44,574 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-03 09:35:21] 2026-04-03 13:34:44,594 | INFO     | did not find any defunct processes belonging to 611906
[2026-04-03 09:35:21] 2026-04-03 13:34:44,615 | INFO     | did not find any defunct processes belonging to 611906
[2026-04-03 09:35:21] 2026-04-03 13:34:44,615 | INFO     | ready for new job
[2026-04-03 09:35:21] 2026-04-03 13:34:44,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-03 09:35:21] 2026-04-03 13:34:44,620 | INFO     | **************************************
[2026-04-03 09:35:21] 2026-04-03 13:34:44,620 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-03 09:35:21] 2026-04-03 13:34:44,620 | INFO     | **************************************
[2026-04-03 09:35:21] 2026-04-03 13:34:44,620 | INFO     | 
[2026-04-03 09:35:21] 2026-04-03 13:34:44,626 | INFO     | architecture information:
[2026-04-03 09:35:21] 2026-04-03 13:34:44,626 | INFO     | executing command: cat /etc/os-release
[2026-04-03 09:35:21] 2026-04-03 13:34:44,647 | INFO     | cat /etc/os-release:
[2026-04-03 09:35:21] NAME="CentOS Linux"
[2026-04-03 09:35:21] VERSION="7 (Core)"
[2026-04-03 09:35:21] ID="centos"
[2026-04-03 09:35:21] ID_LIKE="rhel fedora"
[2026-04-03 09:35:21] VERSION_ID="7"
[2026-04-03 09:35:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-03 09:35:21] ANSI_COLOR="0;31"
[2026-04-03 09:35:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-03 09:35:21] HOME_URL="https://www.centos.org/"
[2026-04-03 09:35:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-03 09:35:21] 
[2026-04-03 09:35:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-03 09:35:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-03 09:35:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-03 09:35:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-03 09:35:21] 
[2026-04-03 09:35:21] 2026-04-03 13:34:44,648 | INFO     | **************************************
[2026-04-03 09:35:21] 2026-04-03 13:34:45,149 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-04-03 09:35:21] 2026-04-03 13:34:45,169 | INFO     | sufficient remaining disk space (129681588224 B)
[2026-04-03 09:35:21] 2026-04-03 13:34:45,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-03 09:35:21] 2026-04-03 13:34:45,169 | INFO     | current server update state: UPDATING_FINAL
[2026-04-03 09:35:21] 2026-04-03 13:34:45,169 | INFO     | update_server=False
[2026-04-03 09:35:21] 2026-04-03 13:34:45,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-03 09:35:21] 2026-04-03 13:34:45,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-03 09:35:21] 2026-04-03 13:34:45,170 | INFO     | will abort loop
[2026-04-03 09:35:21] 2026-04-03 13:34:45,320 | INFO     | all data control threads have been joined
[2026-04-03 09:35:21] 2026-04-03 13:34:45,596 | INFO     | all payload control threads have been joined
[2026-04-03 09:35:21] 2026-04-03 13:34:45,907 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-03 09:35:21] 2026-04-03 13:34:46,174 | INFO     | [job] retrieve thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,175 | INFO     | [job] job monitor thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,324 | INFO     | [data] control thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,573 | INFO     | [payload] execute_payloads thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,601 | INFO     | [payload] control thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,812 | INFO     | [payload] validate_pre thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,813 | INFO     | [data] copytool_in thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:46,814 | INFO     | all job control threads have been joined
[2026-04-03 09:35:21] 2026-04-03 13:34:47,035 | INFO     | [job] validate thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:47,084 | INFO     | [job] create_data_payload thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:47,160 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:47,216 | INFO     | [payload] validate_post thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:47,307 | INFO     | [payload] failed_post thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:47,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-03 09:35:21] 2026-04-03 13:34:47,819 | INFO     | [job] control thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:47,912 | INFO     | [data] copytool_out thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:48,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-03 09:35:21] 2026-04-03 13:34:48,632 | INFO     | [job] queue monitor thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:34:52,419 | INFO     | [data] queue_monitor thread has finished
[2026-04-03 09:35:21] 2026-04-03 13:35:15,334 | INFO     | PID=597476 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-03 09:35:21] 2026-04-03 13:35:15,334 | INFO     | .. there are 14 such processes running
[2026-04-03 09:35:21] 2026-04-03 13:35:15,335 | INFO     | found 0 job(s) in 20 queues
[2026-04-03 09:35:21] 2026-04-03 13:35:15,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-03 09:35:21] 2026-04-03 13:35:15,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-03 09:35:21] 2026-04-03 13:35:15,837 | INFO     | [monitor] cgroup control has ended
[2026-04-03 09:35:21] 2026-04-03 13:35:16,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786096215872)>', '<ExcThread(monitor, started 139785431652096)>']
[2026-04-03 09:35:21] 2026-04-03 13:35:16,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-03 09:35:21] 2026-04-03 13:35:16,339 | INFO     | [monitor] control thread has ended
[2026-04-03 09:35:21] 2026-04-03 13:35:21,158 | INFO     | all workflow threads have been joined
[2026-04-03 09:35:21] 2026-04-03 13:35:21,158 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-03 09:35:21] 2026-04-03 13:35:21,159 | INFO     | traces error code: 0
[2026-04-03 09:35:21] 2026-04-03 13:35:21,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-03 09:35:21] 2026-04-03 13:35:21,372 [wrapper] ==== pilot stdout END ====
[2026-04-03 09:35:21] 2026-04-03 13:35:21,376 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-03 09:35:21] 2026-04-03 13:35:21,378 [wrapper] pilotpid: 597476
[2026-04-03 09:35:21] 2026-04-03 13:35:21,380 [wrapper] Pilot exit status: 0
[2026-04-03 09:35:21] 2026-04-03 13:35:21,390 [wrapper] pandaids: 7065223010 7065223010
[2026-04-03 09:35:21] 2026-04-03 13:35:21,505 [wrapper] cleanup supervisor_pilot 2740896 597477
[2026-04-03 09:35:21] 2026-04-03 13:35:21,509 [wrapper] Test setup, not cleaning
[2026-04-03 09:35:21] 2026-04-03 13:35:21,512 [wrapper] apfmon messages muted
[2026-04-03 09:35:21] 2026-04-03 13:35:21,514 [wrapper] ==== wrapper stdout END ====
[2026-04-03 09:35:21] 2026-04-03 13:35:21,519 [wrapper] ==== wrapper stderr END ====
[2026-04-03 09:35:21]  *** Error codes and diagnostics ***
[2026-04-03 09:35:21]     "exeErrorCode": 0,
[2026-04-03 09:35:21]     "exeErrorDiag": "",
[2026-04-03 09:35:21]     "pilotErrorCode": 0,
[2026-04-03 09:35:21]     "pilotErrorDiag": "",
[2026-04-03 09:35:21]  *** Listing of results directory ***
[2026-04-03 09:35:21] total 733300
[2026-04-03 09:35:21] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas    585013 Mar 25 07:51 pilot3.tar.gz
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas      5111 Mar 25 07:53 queuedata.json
[2026-04-03 09:35:21] -rwx------. 1 boincer umatlas     36322 Mar 25 07:53 runpilot2-wrapper.sh
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas       100 Apr  2 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-03 09:35:21] -rwxr-xr-x. 1 boincer umatlas      7986 Apr  2 14:02 run_atlas
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas       105 Apr  2 14:02 job.xml
[2026-04-03 09:35:21] -rw-r--r--. 3 boincer umatlas 242957835 Apr  2 14:02 EVNT.49127995._000001.pool.root.1
[2026-04-03 09:35:21] -rw-r--r--. 3 boincer umatlas 242957835 Apr  2 14:02 ATLAS.root_0
[2026-04-03 09:35:21] -rw-r--r--. 2 boincer umatlas     15845 Apr  2 14:02 start_atlas.sh
[2026-04-03 09:35:21] drwxrwx--x. 2 boincer umatlas      4096 Apr  2 14:02 shared
[2026-04-03 09:35:21] -rw-r--r--. 2 boincer umatlas    597553 Apr  2 14:02 input.tar.gz
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas         0 Apr  2 14:02 boinc_lockfile
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas      2637 Apr  2 22:09 pandaJob.out
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas        57 Apr  2 22:09 setup.sh.local
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas   1005191 Apr  2 22:10 agis_schedconf.cvmfs.json
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas       428 Apr  2 22:10 workernode_map.json
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas      6947 Apr  3 09:29 init_data.xml
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas 249094592 Apr  3 09:34 HITS.49178071._000158.pool.root.1
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas       531 Apr  3 09:34 boinc_task_state.xml
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas      1048 Apr  3 09:34 memory_monitor_summary.json
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas   1511579 Apr  3 09:34 agis_ddmendpoints.agis.ALL.json
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas    792711 Apr  3 09:34 log.49178071._000158.job.log.tgz.1
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas      6340 Apr  3 09:34 heartbeat.json
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas        96 Apr  3 09:35 pilot_heartbeat.json
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas      8192 Apr  3 09:35 boinc_mmap_file
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas        29 Apr  3 09:35 wrapper_checkpoint.txt
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas      4823 Apr  3 09:35 pilotlog.txt
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas   5181784 Apr  3 09:35 log.49178071._000158.job.log.1
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas       357 Apr  3 09:35 output.list
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas       620 Apr  3 09:35 runtime_log
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas   5990400 Apr  3 09:35 result.tar.gz
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas       789 Apr  3 09:35 r6qLDmlybP9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm5KCMDmxG1jsn.diag
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas      9422 Apr  3 09:35 runtime_log.err
[2026-04-03 09:35:21] -rw-r--r--. 1 boincer umatlas     23323 Apr  3 09:35 stderr.txt
[2026-04-03 09:35:21] HITS file was successfully produced:
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas 249094592 Apr  3 09:34 shared/HITS.pool.root.1
[2026-04-03 09:35:21]  *** Contents of shared directory: ***
[2026-04-03 09:35:21] total 486980
[2026-04-03 09:35:21] -rw-r--r--. 3 boincer umatlas 242957835 Apr  2 14:02 ATLAS.root_0
[2026-04-03 09:35:21] -rw-r--r--. 2 boincer umatlas     15845 Apr  2 14:02 start_atlas.sh
[2026-04-03 09:35:21] -rw-r--r--. 2 boincer umatlas    597553 Apr  2 14:02 input.tar.gz
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas 249094592 Apr  3 09:34 HITS.pool.root.1
[2026-04-03 09:35:21] -rw-------. 1 boincer umatlas   5990400 Apr  3 09:35 result.tar.gz
09:35:23 (578471): run_atlas exited; CPU time 108998.499151
09:35:23 (578471): called boinc_finish(0)

</stderr_txt>
]]>

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