Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:59:22 (3864): wrapper (7.7.26015): starting
07:59:22 (3864): wrapper: running run_atlas (--nthreads 12)
[2026-04-01 07:59:22] Arguments: --nthreads 12
[2026-04-01 07:59:22] Threads: 12
[2026-04-01 07:59:22] Checking for CVMFS
[2026-04-01 07:59:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-01 07:59:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-01 07:59:23] Running cvmfs_config stat atlas.cern.ch
[2026-04-01 07:59:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-01 07:59:23] 2.11.2.0 2984 469046 89852 157954 0 1 17574776 20275201 1 130560 1 200889591 99.958 25983649 16863 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-01 07:59:23] CVMFS is ok
[2026-04-01 07:59:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 07:59:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 07:59:23] Further information can be found at the LHC@home message board.
[2026-04-01 07:59:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 07:59:23] Checking for apptainer binary...
[2026-04-01 07:59:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-01 07:59:23] Running /usr/bin/apptainer --version
[2026-04-01 07:59:23] apptainer version 1.3.2-1.el7
[2026-04-01 07:59:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 07:59:24] c-205-26.aglt2.org
[2026-04-01 07:59:24] apptainer works
[2026-04-01 07:59:24] Set ATHENA_PROC_NUMBER=12
[2026-04-01 07:59:24] Set ATHENA_CORE_NUMBER=12
[2026-04-01 07:59:24] Starting ATLAS job with PandaID=7059667142
[2026-04-01 07:59:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 10:53:10]  *** The last 200 lines of the pilot log: ***
[2026-04-01 10:53:10] 2026-04-01 14:52:02,864 | INFO     | intersect: -40237988256.69739
[2026-04-01 10:53:10] 2026-04-01 14:52:02,864 | INFO     | chi2: 1.4710815789822789
[2026-04-01 10:53:10] 2026-04-01 14:52:02,864 | INFO     | current chi2=1.4710815789822789 (change=-0.07317231202585481 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,864 | INFO     | right removable region: 163
[2026-04-01 10:53:10] 2026-04-01 14:52:02,865 | INFO     | sum of square deviations: 1367709365.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,866 | INFO     | sum of deviations: 4372954214.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,866 | INFO     | mean x: 1775050094.5
[2026-04-01 10:53:10] 2026-04-01 14:52:02,866 | INFO     | mean y: 2698325.1707317075
[2026-04-01 10:53:10] 2026-04-01 14:52:02,866 | INFO     | intersect: -5672639571.491893
[2026-04-01 10:53:10] 2026-04-01 14:52:02,866 | INFO     | chi2: 0.054630305224560215
[2026-04-01 10:53:10] 2026-04-01 14:52:02,866 | INFO     | current chi2=0.054630305224560215 (change=96.28366772699432 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,867 | INFO     | sum of square deviations: 1246386160.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,867 | INFO     | sum of deviations: 4241711128.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,868 | INFO     | mean x: 1775050247.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,868 | INFO     | mean y: 2698380.823899371
[2026-04-01 10:53:10] 2026-04-01 14:52:02,868 | INFO     | intersect: -6038166502.864354
[2026-04-01 10:53:10] 2026-04-01 14:52:02,868 | INFO     | chi2: 0.018969154721303234
[2026-04-01 10:53:10] 2026-04-01 14:52:02,868 | INFO     | current chi2=0.018969154721303234 (change=65.2772309374262 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,868 | INFO     | sum of square deviations: 1132458442.5
[2026-04-01 10:53:10] 2026-04-01 14:52:02,869 | INFO     | sum of deviations: 5633976836.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,869 | INFO     | mean x: 1775050399.5
[2026-04-01 10:53:10] 2026-04-01 14:52:02,870 | INFO     | mean y: 2696586.1428571427
[2026-04-01 10:53:10] 2026-04-01 14:52:02,870 | INFO     | intersect: -8828173014.191769
[2026-04-01 10:53:10] 2026-04-01 14:52:02,870 | INFO     | chi2: 0.0009726755924479832
[2026-04-01 10:53:10] 2026-04-01 14:52:02,870 | INFO     | current chi2=0.0009726755924479832 (change=94.8723303344897 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,870 | INFO     | sum of square deviations: 1025693650.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,871 | INFO     | sum of deviations: 4574002771.999996
[2026-04-01 10:53:10] 2026-04-01 14:52:02,871 | INFO     | mean x: 1775050552.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,871 | INFO     | mean y: 2698097.0805369127
[2026-04-01 10:53:10] 2026-04-01 14:52:02,871 | INFO     | intersect: -7913004749.75694
[2026-04-01 10:53:10] 2026-04-01 14:52:02,872 | INFO     | chi2: 0.0005488371343239746
[2026-04-01 10:53:10] 2026-04-01 14:52:02,872 | INFO     | current chi2=0.0005488371343239746 (change=43.57449301851117 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,872 | INFO     | sum of square deviations: 925859220.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,873 | INFO     | sum of deviations: 3809063260.0000005
[2026-04-01 10:53:10] 2026-04-01 14:52:02,873 | INFO     | mean x: 1775050704.5
[2026-04-01 10:53:10] 2026-04-01 14:52:02,873 | INFO     | mean y: 2699264.9444444445
[2026-04-01 10:53:10] 2026-04-01 14:52:02,873 | INFO     | intersect: -7300009696.735569
[2026-04-01 10:53:10] 2026-04-01 14:52:02,873 | INFO     | chi2: 0.00038862366048383407
[2026-04-01 10:53:10] 2026-04-01 14:52:02,873 | INFO     | current chi2=0.00038862366048383407 (change=29.191442018128406 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,874 | INFO     | sum of square deviations: 832722590.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,874 | INFO     | sum of deviations: 3184786576.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,874 | INFO     | mean x: 1775050857.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,875 | INFO     | mean y: 2700287.014388489
[2026-04-01 10:53:10] 2026-04-01 14:52:02,875 | INFO     | intersect: -6786064914.000389
[2026-04-01 10:53:10] 2026-04-01 14:52:02,875 | INFO     | chi2: 0.00029173830036043595
[2026-04-01 10:53:10] 2026-04-01 14:52:02,875 | INFO     | current chi2=0.00029173830036043595 (change=24.93038123380765 %)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,875 | INFO     | left removable region: 60
[2026-04-01 10:53:10] 2026-04-01 14:52:02,875 | INFO     | sum of square deviations: 338804492.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,876 | INFO     | sum of deviations: 1509532108.0000002
[2026-04-01 10:53:10] 2026-04-01 14:52:02,876 | INFO     | mean x: 1775051589.0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,876 | INFO     | mean y: 2702467.0582524273
[2026-04-01 10:53:10] 2026-04-01 14:52:02,876 | INFO     | intersect: -7905980653.211358
[2026-04-01 10:53:10] 2026-04-01 14:52:02,876 | INFO     | chi2: 7.921987078032982e-05
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | current memory leak: 4.46 B/s (using 103 data points, chi2=0.00)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | could have reported an average CPU frequency of 1751 MHz (9 samples)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | ..............................
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | . Timing measurements:
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | . get job = 0 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | . initial setup = 7 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | . payload setup = 14 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,877 | INFO     | . stage-in = 0 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,878 | INFO     | . payload execution = 10301 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,878 | INFO     | . stage-out = 0 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,878 | INFO     | . log creation = 0 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,878 | INFO     | ..............................
[2026-04-01 10:53:10] 2026-04-01 14:52:02,954 | INFO     | 
[2026-04-01 10:53:10] 2026-04-01 14:52:02,954 | INFO     | job summary report
[2026-04-01 10:53:10] 2026-04-01 14:52:02,954 | INFO     | --------------------------------------------------
[2026-04-01 10:53:10] 2026-04-01 14:52:02,954 | INFO     | PanDA job id: 7059667142
[2026-04-01 10:53:10] 2026-04-01 14:52:02,954 | INFO     | task id: 49182477
[2026-04-01 10:53:10] 2026-04-01 14:52:02,954 | INFO     | errors: (none)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,955 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 10:53:10] 2026-04-01 14:52:02,955 | INFO     | pilot state: finished 
[2026-04-01 10:53:10] 2026-04-01 14:52:02,955 | INFO     | transexitcode: 0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,955 | INFO     | exeerrorcode: 0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,955 | INFO     | exeerrordiag: 
[2026-04-01 10:53:10] 2026-04-01 14:52:02,955 | INFO     | exitcode: 0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,956 | INFO     | exitmsg: OK
[2026-04-01 10:53:10] 2026-04-01 14:52:02,956 | INFO     | cpuconsumptiontime: 116345 s
[2026-04-01 10:53:10] 2026-04-01 14:52:02,956 | INFO     | nevents: 400
[2026-04-01 10:53:10] 2026-04-01 14:52:02,956 | INFO     | neventsw: 0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,956 | INFO     | pid: 12433
[2026-04-01 10:53:10] 2026-04-01 14:52:02,956 | INFO     | pgrp: 12433
[2026-04-01 10:53:10] 2026-04-01 14:52:02,957 | INFO     | corecount: 12
[2026-04-01 10:53:10] 2026-04-01 14:52:02,957 | INFO     | event service: False
[2026-04-01 10:53:10] 2026-04-01 14:52:02,957 | INFO     | sizes: {0: 2280304, 11: 2280304, 10319: 2309102, 10321: 2318100, 10324: 2318414}
[2026-04-01 10:53:10] 2026-04-01 14:52:02,957 | INFO     | --------------------------------------------------
[2026-04-01 10:53:10] 2026-04-01 14:52:02,957 | INFO     | 
[2026-04-01 10:53:10] 2026-04-01 14:52:02,957 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-01 10:53:10] 2026-04-01 14:52:02,980 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,980 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,980 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,980 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,983 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,983 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 10:53:10] 2026-04-01 14:52:02,983 | INFO     | job 7059667142 has completed (purged errors)
[2026-04-01 10:53:10] 2026-04-01 14:52:02,984 | INFO     | overall cleanup function is called
[2026-04-01 10:53:10] 2026-04-01 14:52:03,992 | INFO     | --- collectZombieJob: --- 10, [12433]
[2026-04-01 10:53:10] 2026-04-01 14:52:03,992 | INFO     | zombie collector waiting for pid 12433
[2026-04-01 10:53:10] 2026-04-01 14:52:03,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 10:53:10] 2026-04-01 14:52:03,992 | INFO     | collected zombie processes
[2026-04-01 10:53:10] 2026-04-01 14:52:03,993 | INFO     | will attempt to kill all subprocesses of pid=12433
[2026-04-01 10:53:10] 2026-04-01 14:52:04,088 | INFO     | process IDs to be killed: [12433] (in reverse order)
[2026-04-01 10:53:10] 2026-04-01 14:52:04,139 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 10:53:10] 2026-04-01 14:52:04,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 10:53:10] 2026-04-01 14:52:04,143 | INFO     | did not find any defunct processes belonging to 12433
[2026-04-01 10:53:10] 2026-04-01 14:52:04,146 | INFO     | did not find any defunct processes belonging to 12433
[2026-04-01 10:53:10] 2026-04-01 14:52:04,147 | INFO     | ready for new job
[2026-04-01 10:53:10] 2026-04-01 14:52:04,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 10:53:10] 2026-04-01 14:52:04,148 | INFO     | **************************************
[2026-04-01 10:53:10] 2026-04-01 14:52:04,148 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 10:53:10] 2026-04-01 14:52:04,148 | INFO     | **************************************
[2026-04-01 10:53:10] 2026-04-01 14:52:04,148 | INFO     | 
[2026-04-01 10:53:10] 2026-04-01 14:52:04,149 | INFO     | architecture information:
[2026-04-01 10:53:10] 2026-04-01 14:52:04,149 | INFO     | executing command: cat /etc/os-release
[2026-04-01 10:53:10] 2026-04-01 14:52:04,166 | INFO     | cat /etc/os-release:
[2026-04-01 10:53:10] NAME="CentOS Linux"
[2026-04-01 10:53:10] VERSION="7 (Core)"
[2026-04-01 10:53:10] ID="centos"
[2026-04-01 10:53:10] ID_LIKE="rhel fedora"
[2026-04-01 10:53:10] VERSION_ID="7"
[2026-04-01 10:53:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 10:53:10] ANSI_COLOR="0;31"
[2026-04-01 10:53:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 10:53:10] HOME_URL="https://www.centos.org/"
[2026-04-01 10:53:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 10:53:10] 
[2026-04-01 10:53:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 10:53:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 10:53:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 10:53:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 10:53:10] 
[2026-04-01 10:53:10] 2026-04-01 14:52:04,166 | INFO     | **************************************
[2026-04-01 10:53:10] 2026-04-01 14:52:04,669 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-01 10:53:10] 2026-04-01 14:52:04,686 | INFO     | sufficient remaining disk space (29259464704 B)
[2026-04-01 10:53:10] 2026-04-01 14:52:04,687 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 10:53:10] 2026-04-01 14:52:04,687 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 10:53:10] 2026-04-01 14:52:04,687 | INFO     | update_server=False
[2026-04-01 10:53:10] 2026-04-01 14:52:04,687 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 10:53:10] 2026-04-01 14:52:04,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 10:53:10] 2026-04-01 14:52:04,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 10:53:10] 2026-04-01 14:52:04,688 | INFO     | aborting loop
[2026-04-01 10:53:10] 2026-04-01 14:52:04,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 10:53:10] 2026-04-01 14:52:04,872 | INFO     | all data control threads have been joined
[2026-04-01 10:53:10] 2026-04-01 14:52:05,209 | INFO     | all payload control threads have been joined
[2026-04-01 10:53:10] 2026-04-01 14:52:05,518 | INFO     | all job control threads have been joined
[2026-04-01 10:53:10] 2026-04-01 14:52:05,693 | INFO     | [job] retrieve thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:05,694 | INFO     | [job] job monitor thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:05,694 | INFO     | [job] queue monitor thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:05,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 10:53:10] 2026-04-01 14:52:05,877 | INFO     | [data] control thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:05,905 | INFO     | [payload] failed_post thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,214 | INFO     | [payload] control thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,370 | INFO     | [data] copytool_in thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,523 | INFO     | [job] control thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,726 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,726 | INFO     | [job] validate thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,868 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:06,876 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:07,289 | INFO     | [payload] validate_post thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:07,847 | INFO     | [data] copytool_out thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:08,694 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:15,460 | INFO     | job.realtimelogging is not enabled
[2026-04-01 10:53:10] 2026-04-01 14:52:16,464 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 10:53:10] 2026-04-01 14:52:34,554 | INFO     | PID=7851 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-01 10:53:10] 2026-04-01 14:52:34,554 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 10:53:10] 2026-04-01 14:52:34,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 10:53:10] 2026-04-01 14:52:34,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 10:53:10] 2026-04-01 14:53:03,589 | INFO     | [monitor] cgroup control has ended
[2026-04-01 10:53:10] 2026-04-01 14:53:04,899 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140469353838400)>', '<ExcThread(monitor, started 140468180481792)>']
[2026-04-01 10:53:10] 2026-04-01 14:53:05,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 10:53:10] 2026-04-01 14:53:05,704 | INFO     | [monitor] control thread has ended
[2026-04-01 10:53:10] 2026-04-01 14:53:09,909 | INFO     | all workflow threads have been joined
[2026-04-01 10:53:10] 2026-04-01 14:53:09,910 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 10:53:10] 2026-04-01 14:53:09,910 | INFO     | traces error code: 0
[2026-04-01 10:53:10] 2026-04-01 14:53:09,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 10:53:10] 2026-04-01 14:53:10,001 [wrapper] ==== pilot stdout END ====
[2026-04-01 10:53:10] 2026-04-01 14:53:10,006 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 10:53:10] 2026-04-01 14:53:10,010 [wrapper] pilotpid: 7851
[2026-04-01 10:53:10] 2026-04-01 14:53:10,014 [wrapper] Pilot exit status: 0
[2026-04-01 10:53:10] 2026-04-01 14:53:10,030 [wrapper] pandaids: 7059667142
[2026-04-01 10:53:10] 2026-04-01 14:53:10,077 [wrapper] cleanup supervisor_pilot 26578 7852
[2026-04-01 10:53:10] 2026-04-01 14:53:10,081 [wrapper] Test setup, not cleaning
[2026-04-01 10:53:10] 2026-04-01 14:53:10,085 [wrapper] apfmon messages muted
[2026-04-01 10:53:10] 2026-04-01 14:53:10,089 [wrapper] ==== wrapper stdout END ====
[2026-04-01 10:53:10] 2026-04-01 14:53:10,093 [wrapper] ==== wrapper stderr END ====
[2026-04-01 10:53:10]  *** Error codes and diagnostics ***
[2026-04-01 10:53:10]     "exeErrorCode": 0,
[2026-04-01 10:53:10]     "exeErrorDiag": "",
[2026-04-01 10:53:10]     "pilotErrorCode": 0,
[2026-04-01 10:53:10]     "pilotErrorDiag": "",
[2026-04-01 10:53:10]  *** Listing of results directory ***
[2026-04-01 10:53:10] total 463632
[2026-04-01 10:53:10] -rwx------ 1 boincer umatlas     36322 Mar 19 17:47 runpilot2-wrapper.sh
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas    585013 Mar 22 00:28 pilot3.tar.gz
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas      5111 Mar 23 18:34 queuedata.json
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas       100 Apr  1 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 10:53:10] -rwxr-xr-x 1 boincer umatlas      7986 Apr  1 07:59 run_atlas
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas       105 Apr  1 07:59 job.xml
[2026-04-01 10:53:10] -rw-r--r-- 2 boincer umatlas 235399241 Apr  1 07:59 EVNT.49137153._000001.pool.root.1
[2026-04-01 10:53:10] -rw-r--r-- 2 boincer umatlas     15845 Apr  1 07:59 start_atlas.sh
[2026-04-01 10:53:10] drwxrwx--x 2 boincer umatlas      4096 Apr  1 07:59 shared
[2026-04-01 10:53:10] -rw-r--r-- 2 boincer umatlas    597540 Apr  1 07:59 input.tar.gz
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas         0 Apr  1 07:59 boinc_lockfile
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas      2616 Apr  1 07:59 pandaJob.out
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas        57 Apr  1 07:59 setup.sh.local
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas   1004641 Apr  1 07:59 agis_schedconf.cvmfs.json
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas   1511579 Apr  1 07:59 agis_ddmendpoints.agis.ALL.json
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas       434 Apr  1 07:59 workernode_map.json
[2026-04-01 10:53:10] drwx------ 5 boincer umatlas      4096 Apr  1 07:59 pilot3
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas      5955 Apr  1 10:47 init_data.xml
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas 231581062 Apr  1 10:51 HITS.49182477._000014.pool.root.1
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas      1063 Apr  1 10:51 memory_monitor_summary.json
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas       531 Apr  1 10:51 boinc_task_state.xml
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas    470683 Apr  1 10:52 log.49182477._000014.job.log.tgz.1
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas      6418 Apr  1 10:52 heartbeat.json
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas        95 Apr  1 10:52 pilot_heartbeat.json
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas      8192 Apr  1 10:52 boinc_mmap_file
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas        29 Apr  1 10:52 wrapper_checkpoint.txt
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas      4813 Apr  1 10:53 pilotlog.txt
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas   1451187 Apr  1 10:53 log.49182477._000014.job.log.1
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas       357 Apr  1 10:53 output.list
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas       620 Apr  1 10:53 runtime_log
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas   1935360 Apr  1 10:53 result.tar.gz
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas      9344 Apr  1 10:53 runtime_log.err
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas       665 Apr  1 10:53 Il7LDmsNaN9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQwzLDmqlOZqn.diag
[2026-04-01 10:53:10] -rw-r--r-- 1 boincer umatlas     20889 Apr  1 10:53 stderr.txt
[2026-04-01 10:53:10] HITS file was successfully produced:
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas 231581062 Apr  1 10:51 shared/HITS.pool.root.1
[2026-04-01 10:53:10]  *** Contents of shared directory: ***
[2026-04-01 10:53:10] total 458536
[2026-04-01 10:53:10] -rw-r--r-- 2 boincer umatlas 235399241 Apr  1 07:59 ATLAS.root_0
[2026-04-01 10:53:10] -rw-r--r-- 2 boincer umatlas     15845 Apr  1 07:59 start_atlas.sh
[2026-04-01 10:53:10] -rw-r--r-- 2 boincer umatlas    597540 Apr  1 07:59 input.tar.gz
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas 231581062 Apr  1 10:51 HITS.pool.root.1
[2026-04-01 10:53:10] -rw------- 1 boincer umatlas   1935360 Apr  1 10:53 result.tar.gz
10:53:11 (3864): run_atlas exited; CPU time 116278.980595
10:53:11 (3864): called boinc_finish(0)

</stderr_txt>
]]>

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