Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:32:31 (1870703): wrapper (7.7.26015): starting
11:32:31 (1870703): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 11:32:31] Arguments: --nthreads 4
[2026-04-01 11:32:31] Threads: 4
[2026-04-01 11:32:31] Checking for CVMFS
[2026-04-01 11:32:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-01 11:32:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-01 11:32:32] Running cvmfs_config stat atlas.cern.ch
[2026-04-01 11:32:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-01 11:32:32] 2.9.2.0 1870898 0 29980 157950 4 1 35313439 36864001 0 130560 0 0 0.000 1337 14855 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-01 11:32:32] CVMFS is ok
[2026-04-01 11:32:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 11:32:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 11:32:32] Further information can be found at the LHC@home message board.
[2026-04-01 11:32:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 11:32:32] Checking for apptainer binary...
[2026-04-01 11:32:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-01 11:32:32] Running /usr/bin/apptainer --version
[2026-04-01 11:32:32] apptainer version 1.4.1-1.1
[2026-04-01 11:32:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 11:32:32] magicA254
[2026-04-01 11:32:32] apptainer works
[2026-04-01 11:32:32] Set ATHENA_PROC_NUMBER=4
[2026-04-01 11:32:32] Set ATHENA_CORE_NUMBER=4
[2026-04-01 11:32:32] Starting ATLAS job with PandaID=7060520431
[2026-04-01 11:32:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 13:56:03]  *** The last 200 lines of the pilot log: ***
[2026-04-01 13:56:03] 2026-04-01 11:55:21,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 13:56:03] 2026-04-01 11:55:21,742 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 13:56:03] 2026-04-01 11:55:21,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 13:56:03] 2026-04-01 11:55:21,742 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 13:56:03] 2026-04-01 11:55:21,742 | INFO     | job 7060520431 has completed (purged errors)
[2026-04-01 13:56:03] 2026-04-01 11:55:21,742 | INFO     | overall cleanup function is called
[2026-04-01 13:56:03] 2026-04-01 11:55:22,749 | INFO     | --- collectZombieJob: --- 10, [1879566]
[2026-04-01 13:56:03] 2026-04-01 11:55:22,749 | INFO     | zombie collector waiting for pid 1879566
[2026-04-01 13:56:03] 2026-04-01 11:55:22,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 13:56:03] 2026-04-01 11:55:22,749 | INFO     | collected zombie processes
[2026-04-01 13:56:03] 2026-04-01 11:55:22,749 | INFO     | will attempt to kill all subprocesses of pid=1879566
[2026-04-01 13:56:03] 2026-04-01 11:55:22,790 | INFO     | process IDs to be killed: [1879566] (in reverse order)
[2026-04-01 13:56:03] 2026-04-01 11:55:22,822 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 13:56:03] 2026-04-01 11:55:22,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 13:56:03] 2026-04-01 11:55:22,824 | INFO     | did not find any defunct processes belonging to 1879566
[2026-04-01 13:56:03] 2026-04-01 11:55:22,825 | INFO     | did not find any defunct processes belonging to 1879566
[2026-04-01 13:56:03] 2026-04-01 11:55:22,825 | INFO     | ready for new job
[2026-04-01 13:56:03] 2026-04-01 11:55:22,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 13:56:03] 2026-04-01 11:55:22,826 | INFO     | **************************************
[2026-04-01 13:56:03] 2026-04-01 11:55:22,826 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 13:56:03] 2026-04-01 11:55:22,826 | INFO     | **************************************
[2026-04-01 13:56:03] 2026-04-01 11:55:22,826 | INFO     | 
[2026-04-01 13:56:03] 2026-04-01 11:55:22,827 | INFO     | architecture information:
[2026-04-01 13:56:03] 2026-04-01 11:55:22,827 | INFO     | executing command: cat /etc/os-release
[2026-04-01 13:56:03] 2026-04-01 11:55:22,841 | INFO     | cat /etc/os-release:
[2026-04-01 13:56:03] NAME="CentOS Linux"
[2026-04-01 13:56:03] VERSION="7 (Core)"
[2026-04-01 13:56:03] ID="centos"
[2026-04-01 13:56:03] ID_LIKE="rhel fedora"
[2026-04-01 13:56:03] VERSION_ID="7"
[2026-04-01 13:56:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 13:56:03] ANSI_COLOR="0;31"
[2026-04-01 13:56:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 13:56:03] HOME_URL="https://www.centos.org/"
[2026-04-01 13:56:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 13:56:03] 
[2026-04-01 13:56:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 13:56:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 13:56:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 13:56:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 13:56:03] 
[2026-04-01 13:56:03] 2026-04-01 11:55:22,841 | INFO     | **************************************
[2026-04-01 13:56:03] 2026-04-01 11:55:23,344 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-01 13:56:03] 2026-04-01 11:55:23,361 | INFO     | sufficient remaining disk space (325743280128 B)
[2026-04-01 13:56:03] 2026-04-01 11:55:23,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 13:56:03] 2026-04-01 11:55:23,361 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 13:56:03] 2026-04-01 11:55:23,361 | INFO     | update_server=False
[2026-04-01 13:56:03] 2026-04-01 11:55:23,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 13:56:03] 2026-04-01 11:55:23,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 13:56:03] 2026-04-01 11:55:23,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 13:56:03] 2026-04-01 11:55:23,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 13:56:03] 2026-04-01 11:55:23,362 | INFO     | aborting loop
[2026-04-01 13:56:03] 2026-04-01 11:55:23,882 | INFO     | all payload control threads have been joined
[2026-04-01 13:56:03] 2026-04-01 11:55:23,883 | INFO     | all data control threads have been joined
[2026-04-01 13:56:03] 2026-04-01 11:55:24,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 13:56:03] 2026-04-01 11:55:24,367 | INFO     | [job] queue monitor thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:24,367 | INFO     | [job] retrieve thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:24,367 | INFO     | [job] job monitor thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:24,754 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:24,773 | INFO     | [payload] failed_post thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:24,888 | INFO     | [payload] control thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:24,888 | INFO     | [data] control thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:25,069 | INFO     | all job control threads have been joined
[2026-04-01 13:56:03] 2026-04-01 11:55:25,086 | INFO     | [payload] validate_post thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:25,193 | INFO     | [data] copytool_in thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:25,237 | INFO     | [job] validate thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:25,344 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:25,399 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:25,435 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:26,073 | INFO     | [job] control thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:26,183 | INFO     | [data] copytool_out thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:27,369 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 13:56:03] 2026-04-01 11:55:53,042 | INFO     | PID=1875041 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 13:56:03] 2026-04-01 11:55:53,043 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 13:56:03] 2026-04-01 11:55:53,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 13:56:03] 2026-04-01 11:55:53,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 13:56:03] 2026-04-01 11:55:56,439 | INFO     | [monitor] cgroup control has ended
[2026-04-01 13:56:03] 2026-04-01 11:55:58,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483174483776)>', '<ExcThread(monitor, started 140482373990144)>']
[2026-04-01 13:56:03] 2026-04-01 11:55:59,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 13:56:03] 2026-04-01 11:55:59,075 | INFO     | [monitor] control thread has ended
[2026-04-01 13:56:03] 2026-04-01 11:56:03,556 | INFO     | all workflow threads have been joined
[2026-04-01 13:56:03] 2026-04-01 11:56:03,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 13:56:03] 2026-04-01 11:56:03,557 | INFO     | traces error code: 0
[2026-04-01 13:56:03] 2026-04-01 11:56:03,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 13:56:03] 2026-04-01 11:56:03,634 [wrapper] ==== pilot stdout END ====
[2026-04-01 13:56:03] 2026-04-01 11:56:03,637 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 13:56:03] 2026-04-01 11:56:03,641 [wrapper] pilotpid: 1875041
[2026-04-01 13:56:03] 2026-04-01 11:56:03,645 [wrapper] Pilot exit status: 0
[2026-04-01 13:56:03] 2026-04-01 11:56:03,657 [wrapper] pandaids: 7060520431
[2026-04-01 13:56:03] 2026-04-01 11:56:03,677 [wrapper] cleanup supervisor_pilot 1885335 1875042
[2026-04-01 13:56:03] 2026-04-01 11:56:03,681 [wrapper] Test setup, not cleaning
[2026-04-01 13:56:03] 2026-04-01 11:56:03,685 [wrapper] apfmon messages muted
[2026-04-01 13:56:03] 2026-04-01 11:56:03,688 [wrapper] ==== wrapper stdout END ====
[2026-04-01 13:56:03] 2026-04-01 11:56:03,692 [wrapper] ==== wrapper stderr END ====
[2026-04-01 13:56:03]  *** Error codes and diagnostics ***
[2026-04-01 13:56:03]     "exeErrorCode": 0,
[2026-04-01 13:56:03]     "exeErrorDiag": "",
[2026-04-01 13:56:03]     "pilotErrorCode": 0,
[2026-04-01 13:56:03]     "pilotErrorDiag": "",
[2026-04-01 13:56:03]  *** Listing of results directory ***
[2026-04-01 13:56:03] total 487136
[2026-04-01 13:56:03] -rwx------ 1 boinc boinc     36322 Mar 22 05:32 runpilot2-wrapper.sh
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc    585013 Mar 23 22:46 pilot3.tar.gz
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc      5111 Mar 23 22:52 queuedata.json
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc       100 Apr  1 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 13:56:03] -rwxr-xr-x 1 boinc boinc      7986 Apr  1 11:32 run_atlas
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc       105 Apr  1 11:32 job.xml
[2026-04-01 13:56:03] -rw-r--r-- 2 boinc boinc 253184952 Apr  1 11:32 EVNT.49136988._000007.pool.root.1
[2026-04-01 13:56:03] -rw-r--r-- 2 boinc boinc    597555 Apr  1 11:32 input.tar.gz
[2026-04-01 13:56:03] -rw-r--r-- 2 boinc boinc     15845 Apr  1 11:32 start_atlas.sh
[2026-04-01 13:56:03] drwxrwx--x 2 boinc boinc      4096 Apr  1 11:32 shared
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc         0 Apr  1 11:32 boinc_setup_complete
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc      6378 Apr  1 11:32 init_data.xml
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc         0 Apr  1 11:32 boinc_lockfile
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc      2627 Apr  1 11:32 pandaJob.out
[2026-04-01 13:56:03] -rw------- 1 boinc boinc   1004639 Apr  1 11:32 agis_schedconf.cvmfs.json
[2026-04-01 13:56:03] -rw------- 1 boinc boinc   1511579 Apr  1 11:32 agis_ddmendpoints.agis.ALL.json
[2026-04-01 13:56:03] -rw------- 1 boinc boinc       421 Apr  1 11:32 workernode_map.json
[2026-04-01 13:56:03] drwx------ 5 boinc boinc      4096 Apr  1 11:32 pilot3
[2026-04-01 13:56:03] -rw------- 1 boinc boinc 238622208 Apr  1 13:54 HITS.49182426._000390.pool.root.1
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc       529 Apr  1 13:55 boinc_task_state.xml
[2026-04-01 13:56:03] -rw------- 1 boinc boinc      1020 Apr  1 13:55 memory_monitor_summary.json
[2026-04-01 13:56:03] -rw------- 1 boinc boinc    326706 Apr  1 13:55 log.49182426._000390.job.log.tgz.1
[2026-04-01 13:56:03] -rw------- 1 boinc boinc      6311 Apr  1 13:55 heartbeat.json
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc      8192 Apr  1 13:55 boinc_mmap_file
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc        27 Apr  1 13:55 wrapper_checkpoint.txt
[2026-04-01 13:56:03] -rw------- 1 boinc boinc        95 Apr  1 13:55 pilot_heartbeat.json
[2026-04-01 13:56:03] -rw------- 1 boinc boinc      4748 Apr  1 13:56 pilotlog.txt
[2026-04-01 13:56:03] -rw------- 1 boinc boinc   1220227 Apr  1 13:56 log.49182426._000390.job.log.1
[2026-04-01 13:56:03] -rw------- 1 boinc boinc       357 Apr  1 13:56 output.list
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc       620 Apr  1 13:56 runtime_log
[2026-04-01 13:56:03] -rw------- 1 boinc boinc   1566720 Apr  1 13:56 result.tar.gz
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc      8911 Apr  1 13:56 runtime_log.err
[2026-04-01 13:56:03] -rw------- 1 boinc boinc       661 Apr  1 13:56 6hWNDmYfPO9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQO1LDmXPRZhn.diag
[2026-04-01 13:56:03] -rw-r--r-- 1 boinc boinc     11200 Apr  1 13:56 stderr.txt
[2026-04-01 13:56:03] HITS file was successfully produced:
[2026-04-01 13:56:03] -rw------- 1 boinc boinc 238622208 Apr  1 13:54 shared/HITS.pool.root.1
[2026-04-01 13:56:03]  *** Contents of shared directory: ***
[2026-04-01 13:56:03] total 482424
[2026-04-01 13:56:03] -rw-r--r-- 2 boinc boinc 253184952 Apr  1 11:32 ATLAS.root_0
[2026-04-01 13:56:03] -rw-r--r-- 2 boinc boinc    597555 Apr  1 11:32 input.tar.gz
[2026-04-01 13:56:03] -rw-r--r-- 2 boinc boinc     15845 Apr  1 11:32 start_atlas.sh
[2026-04-01 13:56:03] -rw------- 1 boinc boinc 238622208 Apr  1 13:54 HITS.pool.root.1
[2026-04-01 13:56:03] -rw------- 1 boinc boinc   1566720 Apr  1 13:56 result.tar.gz
13:56:04 (1870703): run_atlas exited; CPU time 32569.914815
13:56:04 (1870703): called boinc_finish(0)

</stderr_txt>
]]>

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