Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:10:22 (3813802): wrapper (7.7.26015): starting
22:10:22 (3813802): wrapper: running run_atlas (--nthreads 4)
[2026-04-05 22:10:22] Arguments: --nthreads 4
[2026-04-05 22:10:22] Threads: 4
[2026-04-05 22:10:22] Checking for CVMFS
[2026-04-05 22:10:22] No cvmfs_config command found, will try listing directly
[2026-04-05 22:10:22] CVMFS is ok
[2026-04-05 22:10:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-05 22:10:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-05 22:10:22] Further information can be found at the LHC@home message board.
[2026-04-05 22:10:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 22:10:22] Checking for apptainer binary...
[2026-04-05 22:10:22] which: no apptainer in ((null))
[2026-04-05 22:10:22] apptainer is not installed, using version from CVMFS
[2026-04-05 22:10:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 22:10:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-04-05 22:10:23] apptainer works
[2026-04-05 22:10:23] Set ATHENA_PROC_NUMBER=4
[2026-04-05 22:10:23] Set ATHENA_CORE_NUMBER=4
[2026-04-05 22:10:23] Starting ATLAS job with PandaID=7073145128
[2026-04-05 22:10:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-05 23:47:18]  *** The last 200 lines of the pilot log: ***
[2026-04-05 23:47:18]  domain=
[2026-04-05 23:47:18]  filesize=242101
[2026-04-05 23:47:18]  filetype=log
[2026-04-05 23:47:18]  guid=9b0f50da-2688-4a5b-af0c-aec69355757a
[2026-04-05 23:47:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-05 23:47:18]  is_altstaged=None
[2026-04-05 23:47:18]  is_tar=False
[2026-04-05 23:47:18]  lfn=log.49263200._012856.job.log.tgz.1
[2026-04-05 23:47:18]  mtime=0
[2026-04-05 23:47:18]  protocol_id=None
[2026-04-05 23:47:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-05 23:47:18]  replicas=None
[2026-04-05 23:47:18]  scope=mc23_13p6TeV
[2026-04-05 23:47:18]  status=None
[2026-04-05 23:47:18]  status_code=0
[2026-04-05 23:47:18]  storage_token=
[2026-04-05 23:47:18]  surl=/var/lib/boinc/var/slot44/slots/9/PanDA_Pilot-7073145128/log.49263200._012856.job.log.tgz.1
[2026-04-05 23:47:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/e9/log.49263200._012856.job.log.tgz.1
[2026-04-05 23:47:18]  workdir=None
[2026-04-05 23:47:18] ]
[2026-04-05 23:47:18] 2026-04-05 21:45:52,002 | INFO     | transferring file log.49263200._012856.job.log.tgz.1 from /var/lib/boinc/var/slot44/slots/9/PanDA_Pilot-7073145128/log.49263200._012856.job.log.tgz.1 to /var/lib/b
[2026-04-05 23:47:18] 2026-04-05 21:45:52,002 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot44/slots/9/PanDA_Pilot-7073145128/log.49263200._012856.job.log.tgz.1 /var/lib/boinc/var/slot44/slots/9/lo
[2026-04-05 23:47:18] 2026-04-05 21:45:52,021 | INFO     | adding to output.list: log.49263200._012856.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/e9/log.49263200._012856.job.log.tg
[2026-04-05 23:47:18] 2026-04-05 21:45:52,022 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-05 23:47:18] 2026-04-05 21:45:52,022 | INFO     | summary of transferred files:
[2026-04-05 23:47:18] 2026-04-05 21:45:52,022 | INFO     |  -- lfn=log.49263200._012856.job.log.tgz.1, status_code=0, status=transferred
[2026-04-05 23:47:18] 2026-04-05 21:45:52,022 | INFO     | stage-out finished correctly
[2026-04-05 23:47:18] 2026-04-05 21:45:53,751 | INFO     | monitor loop #421: job 0:7073145128 is in state 'finished'
[2026-04-05 23:47:18] 2026-04-05 21:45:53,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-05 23:47:18] 2026-04-05 21:45:54,959 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-05 23:47:18] 2026-04-05 21:45:56,254 | INFO     | monitor loop #422: job 0:7073145128 is in state 'finished'
[2026-04-05 23:47:18] 2026-04-05 21:45:56,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,794 | INFO     | job 7073145128 has state=finished
[2026-04-05 23:47:18] 2026-04-05 21:45:56,795 | INFO     | preparing for final server update for job 7073145128 in state='finished'
[2026-04-05 23:47:18] 2026-04-05 21:45:56,795 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/9/PanDA_Pilot-7073145128/jobReport.json
[2026-04-05 23:47:18] 2026-04-05 21:45:56,796 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/9/workernode_map.json
[2026-04-05 23:47:18] 2026-04-05 21:45:56,797 | INFO     | this job has now completed (state=finished)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,797 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,797 | INFO     | log transfer has been attempted: DONE
[2026-04-05 23:47:18] 2026-04-05 21:45:56,797 | INFO     | job 7073145128 has finished - writing final server update
[2026-04-05 23:47:18] 2026-04-05 21:45:56,797 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3302404/.job.ad'
[2026-04-05 23:47:18] 2026-04-05 21:45:56,797 | INFO     | total number of processed events: 400 (read)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,811 | INFO     | using path: /var/lib/boinc/var/slot44/slots/9/PanDA_Pilot-7073145128/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,811 | INFO     | extracted standard info from prmon json
[2026-04-05 23:47:18] 2026-04-05 21:45:56,811 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 23:47:18] 2026-04-05 21:45:56,812 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 23:47:18] 2026-04-05 21:45:56,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | fitting pss+swap vs Time
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | sum of square deviations: 204163828.0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | sum of deviations: -3076008265.0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | mean x (centered): 0.0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | mean y: 2454586.793103448
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | intersect: 2454586.793103448
[2026-04-05 23:47:18] 2026-04-05 21:45:56,813 | INFO     | chi2: 0.018129445747473785
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | current memory leak: -15.07 B/s (using 87 data points, chi2=0.02)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | could have reported an average CPU frequency of 2760 MHz (7 samples)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | ..............................
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . Timing measurements:
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . get job = 0 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . initial setup = 5 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . payload setup = 9 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . stage-in = 0 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . payload execution = 5689 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . stage-out = 0 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | . log creation = 0 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,814 | INFO     | ..............................
[2026-04-05 23:47:18] 2026-04-05 21:45:56,865 | INFO     | 
[2026-04-05 23:47:18] 2026-04-05 21:45:56,865 | INFO     | job summary report
[2026-04-05 23:47:18] 2026-04-05 21:45:56,865 | INFO     | --------------------------------------------------
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | PanDA job id: 7073145128
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | task id: 49263200
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | errors: (none)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | pilot state: finished 
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | transexitcode: 0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | exeerrorcode: 0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | exeerrordiag: 
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | exitcode: 0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | exitmsg: OK
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | cpuconsumptiontime: 22041 s
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | nevents: 400
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | neventsw: 0
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | pid: 3823545
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | pgrp: 3823545
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | corecount: 4
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | event service: False
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | sizes: {0: 2279133, 1: 2281630, 11: 2281630, 5702: 2308265, 5703: 2317285, 5706: 2317341, 5708: 2317663}
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | --------------------------------------------------
[2026-04-05 23:47:18] 2026-04-05 21:45:56,866 | INFO     | 
[2026-04-05 23:47:18] 2026-04-05 21:45:56,867 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/9
[2026-04-05 23:47:18] 2026-04-05 21:45:56,886 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,888 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | job 7073145128 has completed (purged errors)
[2026-04-05 23:47:18] 2026-04-05 21:45:56,890 | INFO     | overall cleanup function is called
[2026-04-05 23:47:18] 2026-04-05 21:45:57,898 | INFO     | --- collectZombieJob: --- 10, [3823545]
[2026-04-05 23:47:18] 2026-04-05 21:45:57,899 | INFO     | zombie collector waiting for pid 3823545
[2026-04-05 23:47:18] 2026-04-05 21:45:57,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-05 23:47:18] 2026-04-05 21:45:57,899 | INFO     | collected zombie processes
[2026-04-05 23:47:18] 2026-04-05 21:45:57,899 | INFO     | will attempt to kill all subprocesses of pid=3823545
[2026-04-05 23:47:18] 2026-04-05 21:45:58,259 | INFO     | process IDs to be killed: [3823545] (in reverse order)
[2026-04-05 23:47:18] 2026-04-05 21:45:58,397 | WARNING  | found no corresponding commands to process id(s)
[2026-04-05 23:47:18] 2026-04-05 21:45:58,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-05 23:47:18] 2026-04-05 21:45:58,414 | INFO     | did not find any defunct processes belonging to 3823545
[2026-04-05 23:47:18] 2026-04-05 21:45:58,428 | INFO     | did not find any defunct processes belonging to 3823545
[2026-04-05 23:47:18] 2026-04-05 21:45:58,428 | INFO     | Ready for new job
[2026-04-05 23:47:18] 2026-04-05 21:45:58,429 | INFO     | **************************************
[2026-04-05 23:47:18] 2026-04-05 21:45:58,429 | INFO     | ***  PanDA Pilot version 3.12.3.1  ***
[2026-04-05 23:47:18] 2026-04-05 21:45:58,429 | INFO     | **************************************
[2026-04-05 23:47:18] 2026-04-05 21:45:58,429 | INFO     | 
[2026-04-05 23:47:18] 2026-04-05 21:45:58,434 | INFO     | architecture information:
[2026-04-05 23:47:18] 2026-04-05 21:45:58,435 | INFO     | executing command: cat /etc/os-release
[2026-04-05 23:47:18] 2026-04-05 21:45:58,451 | INFO     | cat /etc/os-release:
[2026-04-05 23:47:18] NAME="CentOS Linux"
[2026-04-05 23:47:18] VERSION="7 (Core)"
[2026-04-05 23:47:18] ID="centos"
[2026-04-05 23:47:18] ID_LIKE="rhel fedora"
[2026-04-05 23:47:18] VERSION_ID="7"
[2026-04-05 23:47:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-05 23:47:18] ANSI_COLOR="0;31"
[2026-04-05 23:47:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-05 23:47:18] HOME_URL="https://www.centos.org/"
[2026-04-05 23:47:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-05 23:47:18] 
[2026-04-05 23:47:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-05 23:47:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-05 23:47:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-05 23:47:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-05 23:47:18] 
[2026-04-05 23:47:18] 2026-04-05 21:45:58,451 | INFO     | **************************************
[2026-04-05 23:47:18] 2026-04-05 21:45:58,954 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/9
[2026-04-05 23:47:18] 2026-04-05 21:45:58,975 | INFO     | sufficient remaining disk space (335633448960 B)
[2026-04-05 23:47:18] 2026-04-05 21:45:58,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-05 23:47:18] 2026-04-05 21:45:58,976 | INFO     | current server update state: UPDATING_FINAL
[2026-04-05 23:47:18] 2026-04-05 21:45:58,977 | INFO     | update_server=False
[2026-04-05 23:47:18] 2026-04-05 21:45:58,977 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-05 23:47:18] 2026-04-05 21:45:59,168 | INFO     | all payload control threads have been joined
[2026-04-05 23:47:18] 2026-04-05 21:45:59,763 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-05 23:47:18] 2026-04-05 21:45:59,763 | INFO     | aborting loop
[2026-04-05 23:47:18] 2026-04-05 21:45:59,982 | INFO     | [job] retrieve thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,010 | INFO     | [payload] execute_payloads thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,010 | INFO     | all data control threads have been joined
[2026-04-05 23:47:18] 2026-04-05 21:46:00,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-05 23:47:18] 2026-04-05 21:46:00,170 | INFO     | [payload] control thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,338 | INFO     | [job] validate thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,513 | INFO     | [job] create_data_payload thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,556 | INFO     | [payload] validate_post thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,660 | INFO     | [payload] validate_pre thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,675 | INFO     | all job control threads have been joined
[2026-04-05 23:47:18] 2026-04-05 21:46:00,716 | INFO     | [payload] failed_post thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,769 | INFO     | [job] job monitor thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:00,975 | INFO     | [data] copytool_in thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:01,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-05 23:47:18] 2026-04-05 21:46:01,016 | INFO     | [data] control thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:01,681 | INFO     | [job] control thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:01,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-05 23:47:18] 2026-04-05 21:46:02,093 | INFO     | [data] copytool_out thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:02,881 | INFO     | [job] queue monitor thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:05,021 | INFO     | [data] queue_monitor thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:09,764 | INFO     | job.realtimelogging is not enabled
[2026-04-05 23:47:18] 2026-04-05 21:46:10,770 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-05 23:47:18] 2026-04-05 21:46:29,538 | INFO     | PID=3818227 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-05 23:47:18] 2026-04-05 21:46:29,538 | INFO     | found 0 job(s) in 20 queues
[2026-04-05 23:47:18] 2026-04-05 21:46:29,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-05 23:47:18] 2026-04-05 21:46:29,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-05 23:47:18] 2026-04-05 21:46:46,243 | INFO     | [monitor] cgroup control has ended
[2026-04-05 23:47:18] 2026-04-05 21:46:47,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23445666875200)>', '<ExcThread(monitor, started 23445347747584)>']
[2026-04-05 23:47:18] 2026-04-05 21:46:47,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-05 23:47:18] 2026-04-05 21:46:47,628 | INFO     | [monitor] control thread has ended
[2026-04-05 23:47:18] 2026-04-05 21:46:52,275 | INFO     | all workflow threads have been joined
[2026-04-05 23:47:18] 2026-04-05 21:46:52,276 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-05 23:47:18] 2026-04-05 21:46:52,276 | INFO     | traces error code: 0
[2026-04-05 23:47:18] 2026-04-05 21:46:52,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-05 23:47:18] 2026-04-05 21:46:52,381 [wrapper] ==== pilot stdout END ====
[2026-04-05 23:47:18] 2026-04-05 21:46:52,384 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-05 23:47:18] 2026-04-05 21:46:52,387 [wrapper] pilotpid: 3818227
[2026-04-05 23:47:18] 2026-04-05 21:46:52,391 [wrapper] Pilot exit status: 0
[2026-04-05 23:47:18] 2026-04-05 21:46:52,403 [wrapper] pandaids: 7073145128
[2026-04-05 23:47:18] 2026-04-05 21:46:52,524 [wrapper] cleanup supervisor_pilot 3904354 3818228
[2026-04-05 23:47:18] 2026-04-05 21:46:52,527 [wrapper] Test setup, not cleaning
[2026-04-05 23:47:18] 2026-04-05 21:46:52,529 [wrapper] apfmon messages muted
[2026-04-05 23:47:18] 2026-04-05 21:46:52,532 [wrapper] ==== wrapper stdout END ====
[2026-04-05 23:47:18] 2026-04-05 21:46:52,535 [wrapper] ==== wrapper stderr END ====
[2026-04-05 23:47:18]  *** Error codes and diagnostics ***
[2026-04-05 23:47:18]     "exeErrorCode": 0,
[2026-04-05 23:47:18]     "pilotErrorCode": 0,
[2026-04-05 23:47:18]  *** Listing of results directory ***
[2026-04-05 23:47:18] total 417792
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc    644188 Mar 31 22:52 pilot3.tar.gz
[2026-04-05 23:47:18] -rwx------. 1 boinc boinc     36322 Mar 31 23:14 runpilot2-wrapper.sh
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc      5118 Mar 31 23:14 queuedata.json
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc       100 Apr  5 22:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-05 23:47:18] -rwxr-xr-x. 1 boinc boinc      7986 Apr  5 22:10 run_atlas
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc       105 Apr  5 22:10 job.xml
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc      6539 Apr  5 22:10 init_data.xml
[2026-04-05 23:47:18] -rw-r--r--. 2 boinc boinc 226082961 Apr  5 22:10 EVNT.49263198._000515.pool.root.1
[2026-04-05 23:47:18] -rw-r--r--. 2 boinc boinc     15665 Apr  5 22:10 start_atlas.sh
[2026-04-05 23:47:18] drwxrwx--x. 2 boinc boinc      4096 Apr  5 22:10 shared
[2026-04-05 23:47:18] -rw-r--r--. 2 boinc boinc    656922 Apr  5 22:10 input.tar.gz
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc         0 Apr  5 22:10 boinc_lockfile
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc      2575 Apr  5 22:10 pandaJob.out
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc   1005088 Apr  5 22:10 agis_schedconf.cvmfs.json
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc   1511579 Apr  5 22:10 agis_ddmendpoints.agis.ALL.json
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc       443 Apr  5 22:10 workernode_map.json
[2026-04-05 23:47:18] drwx------. 5 boinc boinc      4096 Apr  5 22:10 pilot3
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc 196096091 Apr  5 23:45 HITS.49263200._012856.pool.root.1
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc       487 Apr  5 23:45 boinc_task_state.xml
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc        95 Apr  5 23:45 pilot_heartbeat.json
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc      1020 Apr  5 23:45 memory_monitor_summary.json
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc    242101 Apr  5 23:45 log.49263200._012856.job.log.tgz.1
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc      6363 Apr  5 23:45 heartbeat_new.json
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc      6254 Apr  5 23:45 heartbeat.json
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc      4825 Apr  5 23:46 pilotlog.txt
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc    541533 Apr  5 23:46 log.49263200._012856.job.log.1
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc       357 Apr  5 23:46 output.list
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc       410 Apr  5 23:46 runtime_log
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc    798720 Apr  5 23:46 result.tar.gz
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc      8826 Apr  5 23:46 runtime_log.err
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc       662 Apr  5 23:46 3922d156797c.diag
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc        27 Apr  5 23:47 wrapper_checkpoint.txt
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc      8192 Apr  5 23:47 boinc_mmap_file
[2026-04-05 23:47:18] -rw-r--r--. 1 boinc boinc     20950 Apr  5 23:47 stderr.txt
[2026-04-05 23:47:18] HITS file was successfully produced:
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc 196096091 Apr  5 23:45 shared/HITS.pool.root.1
[2026-04-05 23:47:18]  *** Contents of shared directory: ***
[2026-04-05 23:47:18] total 413740
[2026-04-05 23:47:18] -rw-r--r--. 2 boinc boinc 226082961 Apr  5 22:10 ATLAS.root_0
[2026-04-05 23:47:18] -rw-r--r--. 2 boinc boinc     15665 Apr  5 22:10 start_atlas.sh
[2026-04-05 23:47:18] -rw-r--r--. 2 boinc boinc    656922 Apr  5 22:10 input.tar.gz
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc 196096091 Apr  5 23:45 HITS.pool.root.1
[2026-04-05 23:47:18] -rw-------. 1 boinc boinc    798720 Apr  5 23:46 result.tar.gz
23:47:19 (3813802): run_atlas exited; CPU time 22184.034190
23:47:19 (3813802): called boinc_finish(0)

</stderr_txt>
]]>

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