Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:22 (8593): wrapper (7.7.26015): starting
22:54:22 (8593): wrapper: running run_atlas (--nthreads 8)
[2026-03-31 22:54:22] Arguments: --nthreads 8
[2026-03-31 22:54:22] Threads: 8
[2026-03-31 22:54:22] Checking for CVMFS
[2026-03-31 22:54:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 22:54:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 22:54:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 22:54:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 22:54:27] 2.11.2.0 17366 152544 137088 157930 0 54 21278005 25165824 4838 130560 154 49052000 99.839 31859220 1092 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-31 22:54:27] CVMFS is ok
[2026-03-31 22:54:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 22:54:27] Checking for apptainer binary...
[2026-03-31 22:54:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 22:54:27] Running /usr/bin/apptainer --version
[2026-03-31 22:54:27] apptainer version 1.3.2-1.el7
[2026-03-31 22:54:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 22:54:37] cg-vwn463.simple-grid.lan
[2026-03-31 22:54:37] apptainer works
[2026-03-31 22:54:37] Set ATHENA_PROC_NUMBER=8
[2026-03-31 22:54:37] Set ATHENA_CORE_NUMBER=8
[2026-03-31 22:54:37] Starting ATLAS job with PandaID=7065221944
[2026-03-31 22:54:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 08:22:25]  *** The last 200 lines of the pilot log: ***
[2026-04-01 08:22:25] 2026-04-01 06:21:32,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,134 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-01 08:22:25] 2026-04-01 06:21:33,266 | INFO     | job 7065221944 has state=finished
[2026-04-01 08:22:25] 2026-04-01 06:21:33,266 | INFO     | preparing for final server update for job 7065221944 in state='finished'
[2026-04-01 08:22:25] 2026-04-01 06:21:33,266 | INFO     | reading metadata from: /var/lib/boinc/slots/14/PanDA_Pilot-7065221944/jobReport.json
[2026-04-01 08:22:25] 2026-04-01 06:21:33,269 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/14/workernode_map.json
[2026-04-01 08:22:25] 2026-04-01 06:21:33,270 | INFO     | this job has now completed (state=finished)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,270 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,270 | INFO     | log transfer has been attempted: DONE
[2026-04-01 08:22:25] 2026-04-01 06:21:33,270 | INFO     | job 7065221944 has finished - writing final server update
[2026-04-01 08:22:25] 2026-04-01 06:21:33,271 | INFO     | total number of processed events: 400 (read)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,273 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-7065221944/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,273 | INFO     | extracted standard info from prmon json
[2026-04-01 08:22:25] 2026-04-01 06:21:33,273 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 08:22:25] 2026-04-01 06:21:33,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 08:22:25] 2026-04-01 06:21:33,274 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 08:22:25] 2026-04-01 06:21:33,284 | INFO     | fitting pss+swap vs Time
[2026-04-01 08:22:25] 2026-04-01 06:21:33,286 | INFO     | sum of square deviations: 50750339458.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,295 | INFO     | sum of deviations: 237065211157.00003
[2026-04-01 08:22:25] 2026-04-01 06:21:33,295 | INFO     | mean x (centered): 0.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,295 | INFO     | mean y: 2495295.197440585
[2026-04-01 08:22:25] 2026-04-01 06:21:33,295 | INFO     | intersect: 2495295.197440585
[2026-04-01 08:22:25] 2026-04-01 06:21:33,296 | INFO     | chi2: 4.761836215283818
[2026-04-01 08:22:25] 2026-04-01 06:21:33,297 | INFO     | sum of square deviations: 49371327555.5
[2026-04-01 08:22:25] 2026-04-01 06:21:33,306 | INFO     | sum of deviations: 271594836417.5
[2026-04-01 08:22:25] 2026-04-01 06:21:33,306 | INFO     | mean x (centered): 0.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,306 | INFO     | mean y: 2499083.832103321
[2026-04-01 08:22:25] 2026-04-01 06:21:33,306 | INFO     | intersect: 2499083.832103321
[2026-04-01 08:22:25] 2026-04-01 06:21:33,307 | INFO     | chi2: 4.001910568581047
[2026-04-01 08:22:25] 2026-04-01 06:21:33,307 | INFO     | current chi2=4.001910568581047 (change=15.958668302443446 %)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,307 | INFO     | right removable region: 541
[2026-04-01 08:22:25] 2026-04-01 06:21:33,308 | INFO     | sum of square deviations: 49371327555.5
[2026-04-01 08:22:25] 2026-04-01 06:21:33,317 | INFO     | sum of deviations: 61707545191.499985
[2026-04-01 08:22:25] 2026-04-01 06:21:33,317 | INFO     | mean x (centered): 0.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,317 | INFO     | mean y: 2514671.584870849
[2026-04-01 08:22:25] 2026-04-01 06:21:33,317 | INFO     | intersect: 2514671.584870849
[2026-04-01 08:22:25] 2026-04-01 06:21:33,318 | INFO     | chi2: 1.0383560502867535
[2026-04-01 08:22:25] 2026-04-01 06:21:33,318 | INFO     | current chi2=1.0383560502867535 (change=78.19420905418804 %)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,319 | INFO     | sum of square deviations: 48017525428.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,331 | INFO     | sum of deviations: 27309860734.999985
[2026-04-01 08:22:25] 2026-04-01 06:21:33,331 | INFO     | mean x (centered): 0.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,331 | INFO     | mean y: 2518538.0223463685
[2026-04-01 08:22:25] 2026-04-01 06:21:33,331 | INFO     | intersect: 2518538.0223463685
[2026-04-01 08:22:25] 2026-04-01 06:21:33,332 | INFO     | chi2: 0.8630623538661286
[2026-04-01 08:22:25] 2026-04-01 06:21:33,332 | INFO     | current chi2=0.8630623538661286 (change=16.88184860792361 %)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,332 | INFO     | left removable region: 10
[2026-04-01 08:22:25] 2026-04-01 06:21:33,333 | INFO     | sum of square deviations: 46425912330.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,345 | INFO     | sum of deviations: 63103121216.99999
[2026-04-01 08:22:25] 2026-04-01 06:21:33,345 | INFO     | mean x (centered): 0.0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,345 | INFO     | mean y: 2522614.755178908
[2026-04-01 08:22:25] 2026-04-01 06:21:33,345 | INFO     | intersect: 2522614.755178908
[2026-04-01 08:22:25] 2026-04-01 06:21:33,346 | INFO     | chi2: 0.08324375573446313
[2026-04-01 08:22:25] 2026-04-01 06:21:33,346 | INFO     | current memory leak: 1.36 B/s (using 531 data points, chi2=0.08)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,347 | INFO     | could have reported an average CPU frequency of 2250 MHz (22 samples)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,347 | INFO     | ..............................
[2026-04-01 08:22:25] 2026-04-01 06:21:33,347 | INFO     | . Timing measurements:
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . get job = 0 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . initial setup = 101 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . payload setup = 228 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . stage-in = 0 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . payload execution = 33421 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . stage-out = 3 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | . log creation = 1 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,348 | INFO     | ..............................
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | 
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | job summary report
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | --------------------------------------------------
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | PanDA job id: 7065221944
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | task id: 49176925
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | errors: (none)
[2026-04-01 08:22:25] 2026-04-01 06:21:33,621 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | pilot state: finished 
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | transexitcode: 0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | exeerrorcode: 0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | exeerrordiag: 
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | exitcode: 0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | exitmsg: OK
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | cpuconsumptiontime: 131136 s
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | nevents: 400
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | neventsw: 0
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | pid: 17338
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | pgrp: 17338
[2026-04-01 08:22:25] 2026-04-01 06:21:33,622 | INFO     | corecount: 8
[2026-04-01 08:22:25] 2026-04-01 06:21:33,623 | INFO     | event service: False
[2026-04-01 08:22:25] 2026-04-01 06:21:33,623 | INFO     | sizes: {0: 2279895, 1: 2281724, 12: 2281724, 33654: 2321307, 33658: 2330307, 33661: 2330685}
[2026-04-01 08:22:25] 2026-04-01 06:21:33,623 | INFO     | --------------------------------------------------
[2026-04-01 08:22:25] 2026-04-01 06:21:33,623 | INFO     | 
[2026-04-01 08:22:25] 2026-04-01 06:21:33,623 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-04-01 08:22:25] 2026-04-01 06:21:34,256 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | job 7065221944 has completed (purged errors)
[2026-04-01 08:22:25] 2026-04-01 06:21:34,258 | INFO     | overall cleanup function is called
[2026-04-01 08:22:25] 2026-04-01 06:21:35,267 | INFO     | --- collectZombieJob: --- 10, [17338]
[2026-04-01 08:22:25] 2026-04-01 06:21:35,267 | INFO     | zombie collector waiting for pid 17338
[2026-04-01 08:22:25] 2026-04-01 06:21:35,267 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 08:22:25] 2026-04-01 06:21:35,267 | INFO     | collected zombie processes
[2026-04-01 08:22:25] 2026-04-01 06:21:35,267 | INFO     | will attempt to kill all subprocesses of pid=17338
[2026-04-01 08:22:25] 2026-04-01 06:21:35,366 | INFO     | process IDs to be killed: [17338] (in reverse order)
[2026-04-01 08:22:25] 2026-04-01 06:21:35,862 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 08:22:25] 2026-04-01 06:21:35,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 08:22:25] 2026-04-01 06:21:35,866 | INFO     | did not find any defunct processes belonging to 17338
[2026-04-01 08:22:25] 2026-04-01 06:21:35,874 | INFO     | did not find any defunct processes belonging to 17338
[2026-04-01 08:22:25] 2026-04-01 06:21:35,875 | INFO     | Ready for new job
[2026-04-01 08:22:25] 2026-04-01 06:21:35,877 | INFO     | **************************************
[2026-04-01 08:22:25] 2026-04-01 06:21:35,877 | INFO     | ***  PanDA Pilot version 3.12.3.1  ***
[2026-04-01 08:22:25] 2026-04-01 06:21:35,877 | INFO     | **************************************
[2026-04-01 08:22:25] 2026-04-01 06:21:35,877 | INFO     | 
[2026-04-01 08:22:25] 2026-04-01 06:21:35,878 | INFO     | pilot is running in a VM
[2026-04-01 08:22:25] 2026-04-01 06:21:35,878 | INFO     | architecture information:
[2026-04-01 08:22:25] 2026-04-01 06:21:35,883 | INFO     | executing command: cat /etc/os-release
[2026-04-01 08:22:25] 2026-04-01 06:21:36,080 | INFO     | cat /etc/os-release:
[2026-04-01 08:22:25] NAME="CentOS Linux"
[2026-04-01 08:22:25] VERSION="7 (Core)"
[2026-04-01 08:22:25] ID="centos"
[2026-04-01 08:22:25] ID_LIKE="rhel fedora"
[2026-04-01 08:22:25] VERSION_ID="7"
[2026-04-01 08:22:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 08:22:25] ANSI_COLOR="0;31"
[2026-04-01 08:22:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 08:22:25] HOME_URL="https://www.centos.org/"
[2026-04-01 08:22:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 08:22:25] 
[2026-04-01 08:22:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 08:22:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 08:22:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 08:22:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 08:22:25] 
[2026-04-01 08:22:25] 2026-04-01 06:21:36,081 | INFO     | **************************************
[2026-04-01 08:22:25] 2026-04-01 06:21:36,584 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-04-01 08:22:25] 2026-04-01 06:21:36,718 | INFO     | sufficient remaining disk space (496302555136 B)
[2026-04-01 08:22:25] 2026-04-01 06:21:36,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 08:22:25] 2026-04-01 06:21:36,719 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 08:22:25] 2026-04-01 06:21:36,719 | INFO     | update_server=False
[2026-04-01 08:22:25] 2026-04-01 06:21:36,719 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-01 08:22:25] 2026-04-01 06:21:36,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 08:22:25] 2026-04-01 06:21:36,721 | INFO     | aborting loop
[2026-04-01 08:22:25] 2026-04-01 06:21:37,437 | INFO     | all data control threads have been joined
[2026-04-01 08:22:25] 2026-04-01 06:21:37,725 | INFO     | [job] retrieve thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:37,727 | INFO     | [job] job monitor thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:37,814 | INFO     | all payload control threads have been joined
[2026-04-01 08:22:25] 2026-04-01 06:21:38,037 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,052 | INFO     | all job control threads have been joined
[2026-04-01 08:22:25] 2026-04-01 06:21:38,174 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 08:22:25] 2026-04-01 06:21:38,422 | INFO     | [payload] failed_post thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,442 | INFO     | [payload] validate_post thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,443 | INFO     | [data] control thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,487 | INFO     | [data] copytool_in thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 08:22:25] 2026-04-01 06:21:38,541 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,652 | INFO     | [job] validate thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:38,820 | INFO     | [payload] control thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:39,058 | INFO     | [job] control thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:39,148 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:39,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 08:22:25] 2026-04-01 06:21:39,496 | INFO     | [job] queue monitor thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:40,225 | INFO     | [data] copytool_out thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:21:43,286 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 08:22:25] 2026-04-01 06:22:05,093 | INFO     | 33777s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-01 08:22:25] 2026-04-01 06:22:06,227 | INFO     | PID=12696 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-01 08:22:25] 2026-04-01 06:22:06,227 | INFO     | .. there are 9 such processes running
[2026-04-01 08:22:25] 2026-04-01 06:22:06,228 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 08:22:25] 2026-04-01 06:22:06,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 08:22:25] 2026-04-01 06:22:06,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 08:22:25] 2026-04-01 06:22:17,262 | INFO     | [monitor] cgroup control has ended
[2026-04-01 08:22:25] 2026-04-01 06:22:17,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747092592448)>', '<ExcThread(monitor, started 139746667906816)>']
[2026-04-01 08:22:25] 2026-04-01 06:22:18,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 08:22:25] 2026-04-01 06:22:18,298 | INFO     | [monitor] control thread has ended
[2026-04-01 08:22:25] 2026-04-01 06:22:22,709 | INFO     | all workflow threads have been joined
[2026-04-01 08:22:25] 2026-04-01 06:22:22,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 08:22:25] 2026-04-01 06:22:22,709 | INFO     | traces error code: 0
[2026-04-01 08:22:25] 2026-04-01 06:22:22,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 08:22:25] 2026-04-01 06:22:22,900 [wrapper] ==== pilot stdout END ====
[2026-04-01 08:22:25] 2026-04-01 06:22:22,903 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 08:22:25] 2026-04-01 06:22:22,906 [wrapper] pilotpid: 12696
[2026-04-01 08:22:25] 2026-04-01 06:22:22,913 [wrapper] Pilot exit status: 0
[2026-04-01 08:22:25] 2026-04-01 06:22:22,946 [wrapper] pandaids: 7065221944
[2026-04-01 08:22:25] 2026-04-01 06:22:22,982 [wrapper] cleanup supervisor_pilot 28455 12697
[2026-04-01 08:22:25] 2026-04-01 06:22:23,006 [wrapper] Test setup, not cleaning
[2026-04-01 08:22:25] 2026-04-01 06:22:23,009 [wrapper] apfmon messages muted
[2026-04-01 08:22:25] 2026-04-01 06:22:23,012 [wrapper] ==== wrapper stdout END ====
[2026-04-01 08:22:25] 2026-04-01 06:22:23,027 [wrapper] ==== wrapper stderr END ====
[2026-04-01 08:22:25]  *** Error codes and diagnostics ***
[2026-04-01 08:22:25]     "exeErrorCode": 0,
[2026-04-01 08:22:25]     "pilotErrorCode": 0,
[2026-04-01 08:22:25]  *** Listing of results directory ***
[2026-04-01 08:22:25] total 489160
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc    644188 Mar 31 22:42 pilot3.tar.gz
[2026-04-01 08:22:25] -rwx------. 1 boinc boinc     36322 Mar 31 22:43 runpilot2-wrapper.sh
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc      5118 Mar 31 22:44 queuedata.json
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc       100 Mar 31 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 08:22:25] -rwxr-xr-x. 1 boinc boinc      7986 Mar 31 22:54 run_atlas
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc       105 Mar 31 22:54 job.xml
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc      6307 Mar 31 22:54 init_data.xml
[2026-04-01 08:22:25] -rw-r--r--. 2 boinc boinc 243284252 Mar 31 22:54 EVNT.49135756._000019.pool.root.1
[2026-04-01 08:22:25] -rw-r--r--. 2 boinc boinc     15665 Mar 31 22:54 start_atlas.sh
[2026-04-01 08:22:25] drwxrwx--x. 2 boinc boinc        68 Mar 31 22:54 shared
[2026-04-01 08:22:25] -rw-r--r--. 2 boinc boinc    656956 Mar 31 22:54 input.tar.gz
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc         0 Mar 31 22:54 boinc_lockfile
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc      2670 Mar 31 22:54 pandaJob.out
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc       413 Mar 31 23:00 workernode_map.json
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc   1005014 Mar 31 23:00 agis_schedconf.cvmfs.json
[2026-04-01 08:22:25] drwx------. 5 boinc boinc      4096 Mar 31 23:00 pilot3
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc 246345329 Apr  1 08:20 HITS.49176925._000596.pool.root.1
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc       490 Apr  1 08:20 boinc_task_state.xml
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc        95 Apr  1 08:21 pilot_heartbeat.json
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc      1015 Apr  1 08:21 memory_monitor_summary.json
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc   1511579 Apr  1 08:21 agis_ddmendpoints.agis.ALL.json
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc    570224 Apr  1 08:21 log.49176925._000596.job.log.tgz.1
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc      6329 Apr  1 08:21 heartbeat_new.json
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc      6220 Apr  1 08:21 heartbeat.json
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc      8192 Apr  1 08:22 boinc_mmap_file
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc        29 Apr  1 08:22 wrapper_checkpoint.txt
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc      4996 Apr  1 08:22 pilotlog.txt
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc   3041180 Apr  1 08:22 log.49176925._000596.job.log.1
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc       357 Apr  1 08:22 output.list
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc       410 Apr  1 08:22 runtime_log
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc   3624960 Apr  1 08:22 result.tar.gz
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc      8454 Apr  1 08:22 runtime_log.err
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc       658 Apr  1 08:22 31e27fbc9a9f.diag
[2026-04-01 08:22:25] -rw-r--r--. 1 boinc boinc     20887 Apr  1 08:22 stderr.txt
[2026-04-01 08:22:25] HITS file was successfully produced:
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc 246345329 Apr  1 08:20 shared/HITS.pool.root.1
[2026-04-01 08:22:25]  *** Contents of shared directory: ***
[2026-04-01 08:22:25] total 482356
[2026-04-01 08:22:25] -rw-r--r--. 2 boinc boinc 243284252 Mar 31 22:54 ATLAS.root_0
[2026-04-01 08:22:25] -rw-r--r--. 2 boinc boinc     15665 Mar 31 22:54 start_atlas.sh
[2026-04-01 08:22:25] -rw-r--r--. 2 boinc boinc    656956 Mar 31 22:54 input.tar.gz
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc 246345329 Apr  1 08:20 HITS.pool.root.1
[2026-04-01 08:22:25] -rw-------. 1 boinc boinc   3624960 Apr  1 08:22 result.tar.gz
08:22:26 (8593): run_atlas exited; CPU time 131589.792419
08:22:26 (8593): called boinc_finish(0)

</stderr_txt>
]]>

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