Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:39:23 (62694): wrapper (7.7.26015): starting
15:39:23 (62694): wrapper: running run_atlas (--nthreads 8)
[2026-03-31 15:39:23] Arguments: --nthreads 8
[2026-03-31 15:39:23] Threads: 8
[2026-03-31 15:39:23] Checking for CVMFS
[2026-03-31 15:39:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 15:39:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 15:39:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 15:39:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 15:39:23] 2.13.3.0 5695 140880 406248 157929 1 628 23695793 40960000 11058 16776704 0 200996692 99.674 270954865 38329 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-31 15:39:23] CVMFS is ok
[2026-03-31 15:39:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 15:39:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 15:39:23] Further information can be found at the LHC@home message board.
[2026-03-31 15:39:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 15:39:23] Checking for apptainer binary...
[2026-03-31 15:39:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 15:39:23] Running /usr/bin/apptainer --version
[2026-03-31 15:39:23] apptainer version 1.4.5-2.el9
[2026-03-31 15:39:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 15:39:24] c-210-37-4.aglt2.org
[2026-03-31 15:39:24] apptainer works
[2026-03-31 15:39:24] Set ATHENA_PROC_NUMBER=8
[2026-03-31 15:39:24] Set ATHENA_CORE_NUMBER=8
[2026-03-31 15:39:24] Starting ATLAS job with PandaID=7056955581
[2026-03-31 15:39:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:30:50 (343337): wrapper (7.7.26015): starting
17:30:50 (343337): wrapper: running run_atlas (--nthreads 8)
[2026-03-31 17:30:50] Arguments: --nthreads 8
[2026-03-31 17:30:50] Threads: 8
[2026-03-31 17:30:50] This job has been restarted, cleaning up previous attempt
[2026-03-31 17:30:50] Checking for CVMFS
[2026-03-31 17:30:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 17:30:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 17:30:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 17:30:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 17:30:50] 2.13.3.0 5695 140991 392912 157932 2 305 25521332 40960000 10061 16776704 0 201664965 99.674 271594633 38334 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-31 17:30:50] CVMFS is ok
[2026-03-31 17:30:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 17:30:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 17:30:50] Further information can be found at the LHC@home message board.
[2026-03-31 17:30:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 17:30:50] Checking for apptainer binary...
[2026-03-31 17:30:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 17:30:50] Running /usr/bin/apptainer --version
[2026-03-31 17:30:50] apptainer version 1.4.5-2.el9
[2026-03-31 17:30:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 17:30:51] c-210-37-4.aglt2.org
[2026-03-31 17:30:51] apptainer works
[2026-03-31 17:30:51] Set ATHENA_PROC_NUMBER=8
[2026-03-31 17:30:51] Set ATHENA_CORE_NUMBER=8
[2026-03-31 17:30:51] Starting ATLAS job with PandaID=7056955581
[2026-03-31 17:30:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 20:37:41]  *** The last 200 lines of the pilot log: ***
[2026-03-31 20:37:41] 2026-04-01 00:37:09,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-31 20:37:41] 2026-04-01 00:37:09,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-31 20:37:41] 2026-04-01 00:37:09,662 | INFO     | fitting pss+swap vs Time
[2026-03-31 20:37:41] 2026-04-01 00:37:09,662 | INFO     | sum of square deviations: 1900093369.3114793
[2026-03-31 20:37:41] 2026-04-01 00:37:09,663 | INFO     | sum of deviations: -3672492703.9180317
[2026-03-31 20:37:41] 2026-04-01 00:37:09,663 | INFO     | mean x: 1774998234.3442624
[2026-03-31 20:37:41] 2026-04-01 00:37:09,663 | INFO     | mean y: 2576986.792349727
[2026-03-31 20:37:41] 2026-04-01 00:37:09,663 | INFO     | intersect: 3433286324.7544136
[2026-03-31 20:37:41] 2026-04-01 00:37:09,664 | INFO     | chi2: 1.1737871170079404
[2026-03-31 20:37:41] 2026-04-01 00:37:09,664 | INFO     | sum of square deviations: 1748532432.2752788
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | sum of deviations: -2987278189.8033705
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | mean x: 1774998081.8370786
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | mean y: 2577676.45505618
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | intersect: 3035071074.312684
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | chi2: 1.174337442344328
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | current chi2=1.174337442344328 (change=-0.04688459503546718 %)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | right removable region: 177
[2026-03-31 20:37:41] 2026-04-01 00:37:09,665 | INFO     | sum of square deviations: 1748527126.2022493
[2026-03-31 20:37:41] 2026-04-01 00:37:09,666 | INFO     | sum of deviations: -21207102225.179787
[2026-03-31 20:37:41] 2026-04-01 00:37:09,666 | INFO     | mean x: 1774998386.8539326
[2026-03-31 20:37:41] 2026-04-01 00:37:09,666 | INFO     | mean y: 2594286.6853932585
[2026-03-31 20:37:41] 2026-04-01 00:37:09,666 | INFO     | intersect: 21530754573.96624
[2026-03-31 20:37:41] 2026-04-01 00:37:09,667 | INFO     | chi2: 0.10429652007485057
[2026-03-31 20:37:41] 2026-04-01 00:37:09,667 | INFO     | current chi2=0.10429652007485057 (change=91.11452847253007 %)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,667 | INFO     | sum of square deviations: 1605240108.0577977
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | sum of deviations: -12015255292.606937
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | mean x: 1774998539.364162
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | mean y: 2584487.676300578
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | intersect: 13288485137.311037
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | chi2: 0.04386419483399794
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | current chi2=0.04386419483399794 (change=57.94280115720267 %)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,668 | INFO     | sum of square deviations: 1469999752.375
[2026-03-31 20:37:41] 2026-04-01 00:37:09,669 | INFO     | sum of deviations: -8467465892.000001
[2026-03-31 20:37:41] 2026-04-01 00:37:09,669 | INFO     | mean x: 1774998691.875
[2026-03-31 20:37:41] 2026-04-01 00:37:09,669 | INFO     | mean y: 2580529.476190476
[2026-03-31 20:37:41] 2026-04-01 00:37:09,669 | INFO     | intersect: 10226895776.817854
[2026-03-31 20:37:41] 2026-04-01 00:37:09,670 | INFO     | chi2: 0.02546845149147543
[2026-03-31 20:37:41] 2026-04-01 00:37:09,670 | INFO     | current chi2=0.02546845149147543 (change=41.93794827909271 %)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,670 | INFO     | sum of square deviations: 1342604361.9141166
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | sum of deviations: -6722731816.042945
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | mean x: 1774998844.3680983
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | mean y: 2578440.1840490797
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | intersect: 8890409839.346592
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | chi2: 0.024216160804418053
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | current chi2=0.024216160804418053 (change=4.917027199225408 %)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | left removable region: 40
[2026-03-31 20:37:41] 2026-04-01 00:37:09,671 | INFO     | sum of square deviations: 797154889.0072998
[2026-03-31 20:37:41] 2026-04-01 00:37:09,672 | INFO     | sum of deviations: 1485277135.5985408
[2026-03-31 20:37:41] 2026-04-01 00:37:09,672 | INFO     | mean x: 1774999271.270073
[2026-03-31 20:37:41] 2026-04-01 00:37:09,672 | INFO     | mean y: 2568047.1459854012
[2026-03-31 20:37:41] 2026-04-01 00:37:09,672 | INFO     | intersect: -3304651001.0926676
[2026-03-31 20:37:41] 2026-04-01 00:37:09,672 | INFO     | chi2: 0.007485160666296483
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | current memory leak: 1.86 B/s (using 137 data points, chi2=0.01)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | could have reported an average CPU frequency of 2981 MHz (10 samples)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | ..............................
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | . Timing measurements:
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | . get job = 0 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | . initial setup = 1 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | . payload setup = 8 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | . stage-in = 0 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,673 | INFO     | . payload execution = 11138 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,674 | INFO     | . stage-out = 2 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,674 | INFO     | . log creation = 0 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,674 | INFO     | ..............................
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | 
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | job summary report
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | --------------------------------------------------
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | PanDA job id: 7056955581
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | task id: 49179572
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | errors: (none)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,748 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | pilot state: finished 
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | transexitcode: 0
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | exeerrorcode: 0
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | exeerrordiag: 
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | exitcode: 0
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | exitmsg: OK
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | cpuconsumptiontime: 61572 s
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | nevents: 400
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | neventsw: 0
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | pid: 365040
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | pgrp: 365040
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | corecount: 8
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | event service: False
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | sizes: {0: 2280300, 11: 2280300, 11150: 2309593, 11151: 2309592, 11153: 2318646, 11155: 2318702, 11158: 2319024}
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | --------------------------------------------------
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | 
[2026-03-31 20:37:41] 2026-04-01 00:37:09,749 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-31 20:37:41] 2026-04-01 00:37:09,768 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | job 7056955581 has completed (purged errors)
[2026-03-31 20:37:41] 2026-04-01 00:37:09,770 | INFO     | overall cleanup function is called
[2026-03-31 20:37:41] 2026-04-01 00:37:10,777 | INFO     | --- collectZombieJob: --- 10, [365040]
[2026-03-31 20:37:41] 2026-04-01 00:37:10,777 | INFO     | zombie collector waiting for pid 365040
[2026-03-31 20:37:41] 2026-04-01 00:37:10,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 20:37:41] 2026-04-01 00:37:10,777 | INFO     | collected zombie processes
[2026-03-31 20:37:41] 2026-04-01 00:37:10,777 | INFO     | will attempt to kill all subprocesses of pid=365040
[2026-03-31 20:37:41] 2026-04-01 00:37:11,057 | INFO     | process IDs to be killed: [365040] (in reverse order)
[2026-03-31 20:37:41] 2026-04-01 00:37:11,153 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 20:37:41] 2026-04-01 00:37:11,154 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 20:37:41] 2026-04-01 00:37:11,165 | INFO     | did not find any defunct processes belonging to 365040
[2026-03-31 20:37:41] 2026-04-01 00:37:11,176 | INFO     | did not find any defunct processes belonging to 365040
[2026-03-31 20:37:41] 2026-04-01 00:37:11,176 | INFO     | ready for new job
[2026-03-31 20:37:41] 2026-04-01 00:37:11,176 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-31 20:37:41] 2026-04-01 00:37:11,178 | INFO     | **************************************
[2026-03-31 20:37:41] 2026-04-01 00:37:11,178 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-31 20:37:41] 2026-04-01 00:37:11,178 | INFO     | **************************************
[2026-03-31 20:37:41] 2026-04-01 00:37:11,179 | INFO     | 
[2026-03-31 20:37:41] 2026-04-01 00:37:11,182 | INFO     | architecture information:
[2026-03-31 20:37:41] 2026-04-01 00:37:11,182 | INFO     | executing command: cat /etc/os-release
[2026-03-31 20:37:41] 2026-04-01 00:37:11,198 | INFO     | cat /etc/os-release:
[2026-03-31 20:37:41] NAME="CentOS Linux"
[2026-03-31 20:37:41] VERSION="7 (Core)"
[2026-03-31 20:37:41] ID="centos"
[2026-03-31 20:37:41] ID_LIKE="rhel fedora"
[2026-03-31 20:37:41] VERSION_ID="7"
[2026-03-31 20:37:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 20:37:41] ANSI_COLOR="0;31"
[2026-03-31 20:37:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 20:37:41] HOME_URL="https://www.centos.org/"
[2026-03-31 20:37:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 20:37:41] 
[2026-03-31 20:37:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 20:37:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 20:37:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 20:37:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 20:37:41] 
[2026-03-31 20:37:41] 2026-04-01 00:37:11,199 | INFO     | **************************************
[2026-03-31 20:37:41] 2026-04-01 00:37:11,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-31 20:37:41] 2026-04-01 00:37:11,728 | INFO     | sufficient remaining disk space (74462527488 B)
[2026-03-31 20:37:41] 2026-04-01 00:37:11,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 20:37:41] 2026-04-01 00:37:11,729 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 20:37:41] 2026-04-01 00:37:11,729 | INFO     | update_server=False
[2026-03-31 20:37:41] 2026-04-01 00:37:11,729 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-31 20:37:41] 2026-04-01 00:37:11,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 20:37:41] 2026-04-01 00:37:11,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 20:37:41] 2026-04-01 00:37:11,730 | INFO     | aborting loop
[2026-03-31 20:37:41] 2026-04-01 00:37:11,946 | INFO     | all data control threads have been joined
[2026-03-31 20:37:41] 2026-04-01 00:37:12,472 | INFO     | all job control threads have been joined
[2026-03-31 20:37:41] 2026-04-01 00:37:12,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 20:37:41] 2026-04-01 00:37:12,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 20:37:41] 2026-04-01 00:37:12,734 | INFO     | [job] job monitor thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:12,734 | INFO     | [job] retrieve thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:12,735 | INFO     | [job] queue monitor thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:12,959 | INFO     | [data] control thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:12,979 | INFO     | [payload] validate_post thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:13,058 | INFO     | all payload control threads have been joined
[2026-03-31 20:37:41] 2026-04-01 00:37:13,125 | INFO     | [data] copytool_in thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:13,126 | INFO     | [job] validate thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:13,310 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:13,479 | INFO     | [job] control thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:13,656 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:13,656 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:14,018 | INFO     | [payload] failed_post thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:14,064 | INFO     | [payload] control thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:14,716 | INFO     | [data] copytool_out thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:16,682 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:18,582 | INFO     | [monitor] cgroup control has ended
[2026-03-31 20:37:41] 2026-04-01 00:37:21,866 | INFO     | job.realtimelogging is not enabled
[2026-03-31 20:37:41] 2026-04-01 00:37:22,872 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 20:37:41] 2026-04-01 00:37:23,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140691284940608)>', '<ExcThread(monitor, started 140690839299840)>']
[2026-03-31 20:37:41] 2026-04-01 00:37:28,849 | INFO     | all workflow threads have been joined
[2026-03-31 20:37:41] 2026-04-01 00:37:28,849 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 20:37:41] 2026-04-01 00:37:28,849 | INFO     | traces error code: 0
[2026-03-31 20:37:41] 2026-04-01 00:37:28,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 20:37:41] 2026-04-01 00:37:41,376 | INFO     | PID=347259 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-31 20:37:41] 2026-04-01 00:37:41,376 | INFO     | .. there are 12 such processes running
[2026-03-31 20:37:41] 2026-04-01 00:37:41,377 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 20:37:41] 2026-04-01 00:37:41,377 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 20:37:41] 2026-04-01 00:37:41,377 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 20:37:41] 2026-04-01 00:37:41,377 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 20:37:41] 2026-04-01 00:37:41,377 | INFO     | [monitor] control thread has ended
[2026-03-31 20:37:41] 2026-04-01 00:37:41,512 [wrapper] ==== pilot stdout END ====
[2026-03-31 20:37:41] 2026-04-01 00:37:41,515 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 20:37:41] 2026-04-01 00:37:41,517 [wrapper] pilotpid: 347259
[2026-03-31 20:37:41] 2026-04-01 00:37:41,519 [wrapper] Pilot exit status: 0
[2026-03-31 20:37:41] 2026-04-01 00:37:41,532 [wrapper] pandaids: 7056955581 7056955581
[2026-03-31 20:37:41] 2026-04-01 00:37:41,590 [wrapper] cleanup supervisor_pilot  820417 347260
[2026-03-31 20:37:41] 2026-04-01 00:37:41,593 [wrapper] Test setup, not cleaning
[2026-03-31 20:37:41] 2026-04-01 00:37:41,596 [wrapper] apfmon messages muted
[2026-03-31 20:37:41] 2026-04-01 00:37:41,598 [wrapper] ==== wrapper stdout END ====
[2026-03-31 20:37:41] 2026-04-01 00:37:41,601 [wrapper] ==== wrapper stderr END ====
[2026-03-31 20:37:41]  *** Error codes and diagnostics ***
[2026-03-31 20:37:41]     "exeErrorCode": 0,
[2026-03-31 20:37:41]     "exeErrorDiag": "",
[2026-03-31 20:37:41]     "pilotErrorCode": 0,
[2026-03-31 20:37:41]     "pilotErrorDiag": "",
[2026-03-31 20:37:41]  *** Listing of results directory ***
[2026-03-31 20:37:41] total 661968
[2026-03-31 20:37:41] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-31 20:37:41] -rwx------. 1 boincer umatlas     36322 Mar 16 11:26 runpilot2-wrapper.sh
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas      5111 Mar 16 11:28 queuedata.json
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas    585013 Mar 16 11:28 pilot3.tar.gz
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas       100 Mar 31 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 20:37:41] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 31 15:39 run_atlas
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas       105 Mar 31 15:39 job.xml
[2026-03-31 20:37:41] -rw-r--r--. 3 boincer umatlas 235754875 Mar 31 15:39 EVNT.49131779._000003.pool.root.1
[2026-03-31 20:37:41] -rw-r--r--. 3 boincer umatlas 235754875 Mar 31 15:39 ATLAS.root_0
[2026-03-31 20:37:41] -rw-r--r--. 2 boincer umatlas     15845 Mar 31 15:39 start_atlas.sh
[2026-03-31 20:37:41] drwxrwx--x. 2 boincer umatlas      4096 Mar 31 15:39 shared
[2026-03-31 20:37:41] -rw-r--r--. 2 boincer umatlas    597534 Mar 31 15:39 input.tar.gz
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas         0 Mar 31 15:39 boinc_lockfile
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas      2613 Mar 31 17:30 pandaJob.out
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas        57 Mar 31 17:30 setup.sh.local
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas   1005014 Mar 31 17:30 agis_schedconf.cvmfs.json
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas       442 Mar 31 17:30 workernode_map.json
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas      6843 Mar 31 20:28 init_data.xml
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas 198439400 Mar 31 20:36 HITS.49179572._000071.pool.root.1
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas       531 Mar 31 20:36 boinc_task_state.xml
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas      1044 Mar 31 20:36 memory_monitor_summary.json
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas   1511579 Mar 31 20:37 agis_ddmendpoints.agis.ALL.json
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas    427582 Mar 31 20:37 log.49179572._000071.job.log.tgz.1
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas      6387 Mar 31 20:37 heartbeat.json
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas      8192 Mar 31 20:37 boinc_mmap_file
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas        29 Mar 31 20:37 wrapper_checkpoint.txt
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas        96 Mar 31 20:37 pilot_heartbeat.json
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas       822 Mar 31 20:37 pilotlog.txt
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas   1551997 Mar 31 20:37 log.49179572._000071.job.log.1
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas       357 Mar 31 20:37 output.list
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas       620 Mar 31 20:37 runtime_log
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas   1996800 Mar 31 20:37 result.tar.gz
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas      9437 Mar 31 20:37 runtime_log.err
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas       784 Mar 31 20:37 b3LODmB1OM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmR4xLDmGuwtOm.diag
[2026-03-31 20:37:41] -rw-r--r--. 1 boincer umatlas     23153 Mar 31 20:37 stderr.txt
[2026-03-31 20:37:41] HITS file was successfully produced:
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas 198439400 Mar 31 20:36 shared/HITS.pool.root.1
[2026-03-31 20:37:41]  *** Contents of shared directory: ***
[2026-03-31 20:37:41] total 426584
[2026-03-31 20:37:41] -rw-r--r--. 3 boincer umatlas 235754875 Mar 31 15:39 ATLAS.root_0
[2026-03-31 20:37:41] -rw-r--r--. 2 boincer umatlas     15845 Mar 31 15:39 start_atlas.sh
[2026-03-31 20:37:41] -rw-r--r--. 2 boincer umatlas    597534 Mar 31 15:39 input.tar.gz
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas 198439400 Mar 31 20:36 HITS.pool.root.1
[2026-03-31 20:37:41] -rw-------. 1 boincer umatlas   1996800 Mar 31 20:37 result.tar.gz
20:37:43 (343337): run_atlas exited; CPU time 61814.634057
20:37:43 (343337): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN