Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
10:38:21 (2318011): wrapper (7.7.26015): starting
10:38:21 (2318011): wrapper: running run_atlas (--nthreads 4)
[2026-03-31 10:38:21] Arguments: --nthreads 4
[2026-03-31 10:38:21] Threads: 4
[2026-03-31 10:38:21] Checking for CVMFS
[2026-03-31 10:38:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 10:38:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 10:38:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 10:38:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 10:38:22] 2.13.3.0 1807772 14262 59308 157914 3 252 2959973 4096000 1694 130560 0 9104018 99.917 948492 997 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-31 10:38:22] CVMFS is ok
[2026-03-31 10:38:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 10:38:22] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-31 10:38:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-31 10:38:22] Further information can be found at the LHC@home message board.
[2026-03-31 10:38:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 10:38:22] Checking for apptainer binary...
[2026-03-31 10:38:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 10:38:22] Running /usr/bin/apptainer --version
[2026-03-31 10:38:22] apptainer version 1.4.5
[2026-03-31 10:38:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 10:38:22] OptiPlex7070-Ubuntu
[2026-03-31 10:38:22] apptainer works
[2026-03-31 10:38:22] Set ATHENA_PROC_NUMBER=4
[2026-03-31 10:38:22] Set ATHENA_CORE_NUMBER=4
[2026-03-31 10:38:22] Starting ATLAS job with PandaID=7063011545
[2026-03-31 10:38:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 21:15:08]  *** The last 200 lines of the pilot log: ***
[2026-04-01 21:15:08] 2026-04-02 01:14:12,285 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-01 21:15:08] 2026-04-02 01:14:12,285 | INFO     | summary of transferred files:
[2026-04-01 21:15:08] 2026-04-02 01:14:12,285 | INFO     |  -- lfn=log.49151101._000006.job.log.tgz.1, status_code=0, status=transferred
[2026-04-01 21:15:08] 2026-04-02 01:14:12,285 | INFO     | stage-out finished correctly
[2026-04-01 21:15:08] 2026-04-02 01:14:12,362 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-01 21:15:08] 2026-04-02 01:14:12,998 | WARNING  | process 2326740 can no longer be monitored (due to stat problems) - aborting
[2026-04-01 21:15:08] 2026-04-02 01:14:12,999 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7063011545/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,134 | INFO     | number of running child processes to parent process 2326740: 1
[2026-04-01 21:15:08] 2026-04-02 01:14:13,134 | INFO     | maximum number of monitored processes: 10
[2026-04-01 21:15:08] 2026-04-02 01:14:13,443 | INFO     | job 7063011545 has state=finished
[2026-04-01 21:15:08] 2026-04-02 01:14:13,443 | INFO     | preparing for final server update for job 7063011545 in state='finished'
[2026-04-01 21:15:08] 2026-04-02 01:14:13,443 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7063011545/jobReport.json
[2026-04-01 21:15:08] 2026-04-02 01:14:13,447 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/3/workernode_map.json
[2026-04-01 21:15:08] 2026-04-02 01:14:13,447 | INFO     | this job has now completed (state=finished)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,447 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,447 | INFO     | log transfer has been attempted: DONE
[2026-04-01 21:15:08] 2026-04-02 01:14:13,447 | INFO     | job 7063011545 has finished - writing final server update
[2026-04-01 21:15:08] 2026-04-02 01:14:13,448 | INFO     | total number of processed events: 2050 (read)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,450 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7063011545/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,450 | INFO     | extracted standard info from prmon json
[2026-04-01 21:15:08] 2026-04-02 01:14:13,451 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 21:15:08] 2026-04-02 01:14:13,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-01 21:15:08] 2026-04-02 01:14:13,476 | INFO     | fitting pss+swap vs Time
[2026-04-01 21:15:08] 2026-04-02 01:14:13,478 | INFO     | sum of square deviations: 2640252928930.5
[2026-04-01 21:15:08] 2026-04-02 01:14:13,537 | INFO     | sum of deviations: 21236112366484.473
[2026-04-01 21:15:08] 2026-04-02 01:14:13,537 | INFO     | mean x: 1775030189.5
[2026-04-01 21:15:08] 2026-04-02 01:14:13,537 | INFO     | mean y: 2522412.2159647406
[2026-04-01 21:15:08] 2026-04-02 01:14:13,537 | INFO     | intersect: -14274420582.557425
[2026-04-01 21:15:08] 2026-04-02 01:14:13,538 | INFO     | chi2: 35.447579609601924
[2026-04-01 21:15:08] 2026-04-02 01:14:13,539 | INFO     | sum of square deviations: 2620905766178.0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,591 | INFO     | sum of deviations: 21795624185658.992
[2026-04-01 21:15:08] 2026-04-02 01:14:13,591 | INFO     | mean x: 1775030037.0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,591 | INFO     | mean y: 2526822.0436917036
[2026-04-01 21:15:08] 2026-04-02 01:14:13,591 | INFO     | intersect: -14758739341.724545
[2026-04-01 21:15:08] 2026-04-02 01:14:13,593 | INFO     | chi2: 32.42550995484006
[2026-04-01 21:15:08] 2026-04-02 01:14:13,593 | INFO     | current chi2=32.42550995484006 (change=8.525461224842715 %)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,593 | INFO     | right removable region: 2036
[2026-04-01 21:15:08] 2026-04-02 01:14:13,595 | INFO     | sum of square deviations: 2620905766178.0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,662 | INFO     | sum of deviations: 20749453822761.0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,662 | INFO     | mean x: 1775030342.0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,662 | INFO     | mean y: 2526245.9646539027
[2026-04-01 21:15:08] 2026-04-02 01:14:13,662 | INFO     | intersect: -14050214829.51409
[2026-04-01 21:15:08] 2026-04-02 01:14:13,664 | INFO     | chi2: 33.41996449916734
[2026-04-01 21:15:08] 2026-04-02 01:14:13,664 | INFO     | current chi2=33.41996449916734 (change=5.720038244544481 %)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,664 | INFO     | left removable region: 10
[2026-04-01 21:15:08] 2026-04-02 01:14:13,666 | INFO     | sum of square deviations: 2578675186462.5
[2026-04-01 21:15:08] 2026-04-02 01:14:13,731 | INFO     | sum of deviations: 21159756170273.008
[2026-04-01 21:15:08] 2026-04-02 01:14:13,732 | INFO     | mean x: 1775030311.5
[2026-04-01 21:15:08] 2026-04-02 01:14:13,732 | INFO     | mean y: 2531537.223099704
[2026-04-01 21:15:08] 2026-04-02 01:14:13,732 | INFO     | intersect: -14562780442.882675
[2026-04-01 21:15:08] 2026-04-02 01:14:13,734 | INFO     | chi2: 30.373072962094067
[2026-04-01 21:15:08] 2026-04-02 01:14:13,734 | INFO     | current memory leak: 8.21 B/s (using 2026 data points, chi2=30.37)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,735 | INFO     | could have reported an average CPU frequency of 3502 MHz (72 samples)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,735 | INFO     | ..............................
[2026-04-01 21:15:08] 2026-04-02 01:14:13,735 | INFO     | . Timing measurements:
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . get job = 0 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . initial setup = 5 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . payload setup = 6 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . stage-in = 0 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . payload execution = 124506 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . stage-out = 5 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | . log creation = 0 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,736 | INFO     | ..............................
[2026-04-01 21:15:08] 2026-04-02 01:14:13,782 | INFO     | 
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | job summary report
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | --------------------------------------------------
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | PanDA job id: 7063011545
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | task id: 49151101
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | errors: (none)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 21:15:08] 2026-04-02 01:14:13,783 | INFO     | pilot state: finished 
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | transexitcode: 0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | exeerrorcode: 0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | exeerrordiag: 
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | exitcode: 0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | exitmsg: OK
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | cpuconsumptiontime: 497110 s
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | nevents: 2050
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | neventsw: 0
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | pid: 2326740
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | pgrp: 2326740
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | corecount: 4
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | event service: False
[2026-04-01 21:15:08] 2026-04-02 01:14:13,784 | INFO     | sizes: {0: 2280879, 11: 2280879, 124516: 2366682, 124522: 2375708, 124523: 2375764, 124524: 2376010}
[2026-04-01 21:15:08] 2026-04-02 01:14:13,785 | INFO     | --------------------------------------------------
[2026-04-01 21:15:08] 2026-04-02 01:14:13,785 | INFO     | 
[2026-04-01 21:15:08] 2026-04-02 01:14:13,785 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/3
[2026-04-01 21:15:08] 2026-04-02 01:14:13,795 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 21:15:08] 2026-04-02 01:14:13,797 | INFO     | job 7063011545 has completed (purged errors)
[2026-04-01 21:15:08] 2026-04-02 01:14:13,798 | INFO     | overall cleanup function is called
[2026-04-01 21:15:08] 2026-04-02 01:14:14,808 | INFO     | --- collectZombieJob: --- 10, [2326740]
[2026-04-01 21:15:08] 2026-04-02 01:14:14,808 | INFO     | zombie collector waiting for pid 2326740
[2026-04-01 21:15:08] 2026-04-02 01:14:14,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 21:15:08] 2026-04-02 01:14:14,808 | INFO     | collected zombie processes
[2026-04-01 21:15:08] 2026-04-02 01:14:14,808 | INFO     | will attempt to kill all subprocesses of pid=2326740
[2026-04-01 21:15:08] 2026-04-02 01:14:14,947 | INFO     | process IDs to be killed: [2326740] (in reverse order)
[2026-04-01 21:15:08] 2026-04-02 01:14:14,995 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 21:15:08] 2026-04-02 01:14:14,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 21:15:08] 2026-04-02 01:14:14,997 | INFO     | did not find any defunct processes belonging to 2326740
[2026-04-01 21:15:08] 2026-04-02 01:14:14,999 | INFO     | did not find any defunct processes belonging to 2326740
[2026-04-01 21:15:08] 2026-04-02 01:14:14,999 | INFO     | ready for new job
[2026-04-01 21:15:08] 2026-04-02 01:14:14,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 21:15:08] 2026-04-02 01:14:15,002 | INFO     | **************************************
[2026-04-01 21:15:08] 2026-04-02 01:14:15,002 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 21:15:08] 2026-04-02 01:14:15,002 | INFO     | **************************************
[2026-04-01 21:15:08] 2026-04-02 01:14:15,002 | INFO     | 
[2026-04-01 21:15:08] 2026-04-02 01:14:15,003 | INFO     | architecture information:
[2026-04-01 21:15:08] 2026-04-02 01:14:15,003 | INFO     | executing command: cat /etc/os-release
[2026-04-01 21:15:08] 2026-04-02 01:14:15,013 | INFO     | cat /etc/os-release:
[2026-04-01 21:15:08] NAME="CentOS Linux"
[2026-04-01 21:15:08] VERSION="7 (Core)"
[2026-04-01 21:15:08] ID="centos"
[2026-04-01 21:15:08] ID_LIKE="rhel fedora"
[2026-04-01 21:15:08] VERSION_ID="7"
[2026-04-01 21:15:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 21:15:08] ANSI_COLOR="0;31"
[2026-04-01 21:15:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 21:15:08] HOME_URL="https://www.centos.org/"
[2026-04-01 21:15:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 21:15:08] 
[2026-04-01 21:15:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 21:15:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 21:15:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 21:15:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 21:15:08] 
[2026-04-01 21:15:08] 2026-04-02 01:14:15,013 | INFO     | **************************************
[2026-04-01 21:15:08] 2026-04-02 01:14:15,516 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/3
[2026-04-01 21:15:08] 2026-04-02 01:14:15,526 | INFO     | sufficient remaining disk space (400601120768 B)
[2026-04-01 21:15:08] 2026-04-02 01:14:15,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 21:15:08] 2026-04-02 01:14:15,527 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 21:15:08] 2026-04-02 01:14:15,527 | INFO     | update_server=False
[2026-04-01 21:15:08] 2026-04-02 01:14:15,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 21:15:08] 2026-04-02 01:14:15,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 21:15:08] 2026-04-02 01:14:15,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 21:15:08] 2026-04-02 01:14:15,637 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-01 21:15:08] 2026-04-02 01:14:15,637 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-01 21:15:08] 2026-04-02 01:14:15,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 21:15:08] 2026-04-02 01:14:15,637 | INFO     | will abort loop
[2026-04-01 21:15:08] 2026-04-02 01:14:15,869 | INFO     | all data control threads have been joined
[2026-04-01 21:15:08] 2026-04-02 01:14:16,001 | INFO     | all payload control threads have been joined
[2026-04-01 21:15:08] 2026-04-02 01:14:16,532 | INFO     | [job] retrieve thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:16,533 | INFO     | [job] queue monitor thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:16,607 | INFO     | all job control threads have been joined
[2026-04-01 21:15:08] 2026-04-02 01:14:16,642 | INFO     | [job] job monitor thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:16,820 | INFO     | [payload] validate_post thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:16,874 | INFO     | [data] control thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,006 | INFO     | [payload] control thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,043 | INFO     | [job] validate thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,127 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,533 | INFO     | [data] copytool_out thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,612 | INFO     | [job] control thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,642 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,646 | INFO     | [payload] failed_post thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,675 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,951 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:17,996 | INFO     | [data] copytool_in thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:18,440 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 21:15:08] 2026-04-02 01:14:22,445 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 21:15:08] 2026-04-02 01:14:45,018 | INFO     | PID=2322156 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 21:15:08] 2026-04-02 01:14:45,018 | INFO     | .. there are 2 such processes running
[2026-04-01 21:15:08] 2026-04-02 01:14:45,018 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 21:15:08] 2026-04-02 01:14:45,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 21:15:08] 2026-04-02 01:14:45,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 21:15:08] 2026-04-02 01:15:02,754 | INFO     | [monitor] cgroup control has ended
[2026-04-01 21:15:08] 2026-04-02 01:15:03,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123685887076160)>', '<ExcThread(monitor, started 123685605488384)>']
[2026-04-01 21:15:08] 2026-04-02 01:15:04,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 21:15:08] 2026-04-02 01:15:04,115 | INFO     | [monitor] control thread has ended
[2026-04-01 21:15:08] 2026-04-02 01:15:08,510 | INFO     | all workflow threads have been joined
[2026-04-01 21:15:08] 2026-04-02 01:15:08,510 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 21:15:08] 2026-04-02 01:15:08,510 | INFO     | traces error code: 0
[2026-04-01 21:15:08] 2026-04-02 01:15:08,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 21:15:08] 2026-04-02 01:15:08,611 [wrapper] ==== pilot stdout END ====
[2026-04-01 21:15:08] 2026-04-02 01:15:08,613 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 21:15:08] 2026-04-02 01:15:08,615 [wrapper] pilotpid: 2322156
[2026-04-01 21:15:08] 2026-04-02 01:15:08,616 [wrapper] Pilot exit status: 0
[2026-04-01 21:15:08] 2026-04-02 01:15:08,626 [wrapper] pandaids: 7063011545
[2026-04-01 21:15:08] 2026-04-02 01:15:08,650 [wrapper] cleanup supervisor_pilot 2754134 2322157
[2026-04-01 21:15:08] 2026-04-02 01:15:08,652 [wrapper] Test setup, not cleaning
[2026-04-01 21:15:08] 2026-04-02 01:15:08,655 [wrapper] apfmon messages muted
[2026-04-01 21:15:08] 2026-04-02 01:15:08,657 [wrapper] ==== wrapper stdout END ====
[2026-04-01 21:15:08] 2026-04-02 01:15:08,659 [wrapper] ==== wrapper stderr END ====
[2026-04-01 21:15:08]  *** Error codes and diagnostics ***
[2026-04-01 21:15:08]     "exeErrorCode": 0,
[2026-04-01 21:15:08]     "exeErrorDiag": "",
[2026-04-01 21:15:08]     "pilotErrorCode": 0,
[2026-04-01 21:15:08]     "pilotErrorDiag": "",
[2026-04-01 21:15:08]  *** Listing of results directory ***
[2026-04-01 21:15:08] total 2098136
[2026-04-01 21:15:08] -rw-r--r-- 1 whitlerd whitlerd       5111 Mar 23 04:14 queuedata.json
[2026-04-01 21:15:08] -rw-r--r-- 1 whitlerd whitlerd     585013 Mar 23 04:14 pilot3.tar.gz
[2026-04-01 21:15:08] -rwx------ 1 whitlerd whitlerd      36322 Mar 23 04:14 runpilot2-wrapper.sh
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd        100 Mar 31 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 21:15:08] -rwxr-xr-x 1 whitlerd whitlerd       7986 Mar 31 10:38 run_atlas
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd        105 Mar 31 10:38 job.xml
[2026-04-01 21:15:08] -rw-r--r-- 2 whitlerd whitlerd      15845 Mar 31 10:38 start_atlas.sh
[2026-04-01 21:15:08] drwxrwx--x 2 whitlerd whitlerd       4096 Mar 31 10:38 shared
[2026-04-01 21:15:08] -rw-r--r-- 2 whitlerd whitlerd     597718 Mar 31 10:38 input.tar.gz
[2026-04-01 21:15:08] -rw-r--r-- 2 whitlerd whitlerd  334148301 Mar 31 10:38 EVNT.49151093._000001.pool.root.1
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd          0 Mar 31 10:38 boinc_setup_complete
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd       6446 Mar 31 10:38 init_data.xml
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd          0 Mar 31 10:38 boinc_lockfile
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd       2935 Mar 31 10:38 pandaJob.out
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd    1003225 Mar 31 10:38 agis_schedconf.cvmfs.json
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd        431 Mar 31 10:38 workernode_map.json
[2026-04-01 21:15:08] drwx------ 5 whitlerd whitlerd       4096 Mar 31 10:38 pilot3
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd        532 Apr  1 21:08 boinc_task_state.xml
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd 1769280522 Apr  1 21:13 HITS.49151101._000006.pool.root.1
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd       1062 Apr  1 21:14 memory_monitor_summary.json
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd         95 Apr  1 21:14 pilot_heartbeat.json
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd    1511579 Apr  1 21:14 agis_ddmendpoints.agis.ALL.json
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd    2671487 Apr  1 21:14 log.49151101._000006.job.log.tgz.1
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd       7074 Apr  1 21:14 heartbeat.json
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd       8192 Apr  1 21:15 boinc_mmap_file
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd         29 Apr  1 21:15 wrapper_checkpoint.txt
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd       5020 Apr  1 21:15 pilotlog.txt
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd   17893564 Apr  1 21:15 log.49151101._000006.job.log.1
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd        353 Apr  1 21:15 output.list
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd        620 Apr  1 21:15 runtime_log
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd   20582400 Apr  1 21:15 result.tar.gz
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd       9056 Apr  1 21:15 runtime_log.err
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd        672 Apr  1 21:15 PF7MDmBcpO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmre9LDmViGORn.diag
[2026-04-01 21:15:08] -rw-rw-r-- 1 whitlerd whitlerd      21720 Apr  1 21:15 stderr.txt
[2026-04-01 21:15:08] HITS file was successfully produced:
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd 1769280522 Apr  1 21:13 shared/HITS.pool.root.1
[2026-04-01 21:15:08]  *** Contents of shared directory: ***
[2026-04-01 21:15:08] total 2074840
[2026-04-01 21:15:08] -rw-r--r-- 2 whitlerd whitlerd      15845 Mar 31 10:38 start_atlas.sh
[2026-04-01 21:15:08] -rw-r--r-- 2 whitlerd whitlerd     597718 Mar 31 10:38 input.tar.gz
[2026-04-01 21:15:08] -rw-r--r-- 2 whitlerd whitlerd  334148301 Mar 31 10:38 ATLAS.root_0
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd 1769280522 Apr  1 21:13 HITS.pool.root.1
[2026-04-01 21:15:08] -rw------- 1 whitlerd whitlerd   20582400 Apr  1 21:15 result.tar.gz
21:15:10 (2318011): run_atlas exited; CPU time 498879.038531
21:15:10 (2318011): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN