Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:12:15 (11654): wrapper (7.7.26015): starting
14:12:15 (11654): wrapper: running run_atlas (--nthreads 8)
[2026-03-31 14:12:15] Arguments: --nthreads 8
[2026-03-31 14:12:15] Threads: 8
[2026-03-31 14:12:15] Checking for CVMFS
[2026-03-31 14:12:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 14:12:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 14:12:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 14:12:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 14:12:15] 2.11.0.0 13282 245536 108220 157914 3 188 3765935 4096000 2048 130560 1 28996061 99.704 18927275 490 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-31 14:12:15] CVMFS is ok
[2026-03-31 14:12:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 14:12:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 14:12:15] Further information can be found at the LHC@home message board.
[2026-03-31 14:12:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 14:12:15] Checking for apptainer binary...
[2026-03-31 14:12:15] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-31 14:12:15] apptainer is not installed, using version from CVMFS
[2026-03-31 14:12:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 14:12:15] WARNING: Environment variable TMPDIR already has value [/tmp/job_11441312/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node022
[2026-03-31 14:12:15] apptainer works
[2026-03-31 14:12:15] Set ATHENA_PROC_NUMBER=8
[2026-03-31 14:12:15] Set ATHENA_CORE_NUMBER=8
[2026-03-31 14:12:15] Starting ATLAS job with PandaID=7073091326
[2026-03-31 14:12:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11441312/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 15:06:35]  *** The last 200 lines of the pilot log: ***
[2026-03-31 15:06:35]  direct_access_wan=False
[2026-03-31 15:06:35]  domain=
[2026-03-31 15:06:35]  filesize=301615
[2026-03-31 15:06:35]  filetype=log
[2026-03-31 15:06:35]  guid=19ff525a-0745-4b33-b8c3-8b0fa8f28a51
[2026-03-31 15:06:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-31 15:06:35]  is_altstaged=None
[2026-03-31 15:06:35]  is_tar=False
[2026-03-31 15:06:35]  lfn=log.49263208._013223.job.log.tgz.1
[2026-03-31 15:06:35]  mtime=0
[2026-03-31 15:06:35]  protocol_id=None
[2026-03-31 15:06:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-31 15:06:35]  replicas=None
[2026-03-31 15:06:35]  scope=mc23_13p6TeV
[2026-03-31 15:06:35]  status=None
[2026-03-31 15:06:35]  status_code=0
[2026-03-31 15:06:35]  storage_token=
[2026-03-31 15:06:35]  surl=/tmp/job_11441312/atlas/pilot/slots/0/PanDA_Pilot-7073091326/log.49263208._013223.job.log.tgz.1
[2026-03-31 15:06:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/e7/log.49263208._013223.job.log.tgz.1
[2026-03-31 15:06:35]  workdir=None
[2026-03-31 15:06:35] ]
[2026-03-31 15:06:35] 2026-03-31 13:05:40,306 | INFO     | transferring file log.49263208._013223.job.log.tgz.1 from /tmp/job_11441312/atlas/pilot/slots/0/PanDA_Pilot-7073091326/log.49263208._013223.job.log.tgz.1 to /tmp/j
[2026-03-31 15:06:35] 2026-03-31 13:05:40,307 | INFO     | executing command: /usr/bin/env mv /tmp/job_11441312/atlas/pilot/slots/0/PanDA_Pilot-7073091326/log.49263208._013223.job.log.tgz.1 /tmp/job_11441312/atlas/pilot/sl
[2026-03-31 15:06:35] 2026-03-31 13:05:40,316 | INFO     | adding to output.list: log.49263208._013223.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/e7/log.49263208._013223.job.log.tg
[2026-03-31 15:06:35] 2026-03-31 13:05:40,317 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-31 15:06:35] 2026-03-31 13:05:40,317 | INFO     | summary of transferred files:
[2026-03-31 15:06:35] 2026-03-31 13:05:40,317 | INFO     |  -- lfn=log.49263208._013223.job.log.tgz.1, status_code=0, status=transferred
[2026-03-31 15:06:35] 2026-03-31 13:05:40,317 | INFO     | stage-out finished correctly
[2026-03-31 15:06:35] 2026-03-31 13:05:41,719 | INFO     | 3201s have passed since pilot start - server update state is 'RUNNING'
[2026-03-31 15:06:35] 2026-03-31 13:05:41,923 | INFO     | monitor loop #237: job 0:7073091326 is in state 'finished'
[2026-03-31 15:06:35] 2026-03-31 13:05:41,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,444 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-31 15:06:35] 2026-03-31 13:05:42,495 | INFO     | job 7073091326 has state=finished
[2026-03-31 15:06:35] 2026-03-31 13:05:42,495 | INFO     | preparing for final server update for job 7073091326 in state='finished'
[2026-03-31 15:06:35] 2026-03-31 13:05:42,495 | INFO     | reading metadata from: /tmp/job_11441312/atlas/pilot/slots/0/PanDA_Pilot-7073091326/jobReport.json
[2026-03-31 15:06:35] 2026-03-31 13:05:42,496 | INFO     | added worker_node to metadata from /tmp/job_11441312/atlas/pilot/slots/0/workernode_map.json
[2026-03-31 15:06:35] 2026-03-31 13:05:42,496 | INFO     | this job has now completed (state=finished)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,496 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,496 | INFO     | log transfer has been attempted: DONE
[2026-03-31 15:06:35] 2026-03-31 13:05:42,496 | INFO     | job 7073091326 has finished - writing final server update
[2026-03-31 15:06:35] 2026-03-31 13:05:42,497 | INFO     | total number of processed events: 400 (read)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,520 | INFO     | using path: /tmp/job_11441312/atlas/pilot/slots/0/PanDA_Pilot-7073091326/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,520 | INFO     | extracted standard info from prmon json
[2026-03-31 15:06:35] 2026-03-31 13:05:42,520 | INFO     | extracted standard memory fields from prmon json
[2026-03-31 15:06:35] 2026-03-31 13:05:42,520 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-31 15:06:35] 2026-03-31 13:05:42,520 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | fitting pss+swap vs Time
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | sum of square deviations: 30168007.5
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | sum of deviations: 396013494.5
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | mean x (centered): 0.0
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | mean y: 2551904.586956522
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | intersect: 2551904.586956522
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | chi2: 0.00013299661182522384
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | current memory leak: 13.13 B/s (using 46 data points, chi2=0.00)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | could have reported an average CPU frequency of 2415 MHz (5 samples)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,521 | INFO     | ..............................
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . Timing measurements:
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . get job = 0 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . initial setup = 3 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . payload setup = 4 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . stage-in = 0 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . payload execution = 3177 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . stage-out = 0 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | . log creation = 0 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,522 | INFO     | ..............................
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | 
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | job summary report
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | --------------------------------------------------
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | PanDA job id: 7073091326
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | task id: 49263208
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | errors: (none)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | pilot state: finished 
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | transexitcode: 0
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | exeerrorcode: 0
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | exeerrordiag: 
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | exitcode: 0
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | exitmsg: OK
[2026-03-31 15:06:35] 2026-03-31 13:05:42,716 | INFO     | cpuconsumptiontime: 22973 s
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | nevents: 400
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | neventsw: 0
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | pid: 9579
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | pgrp: 9579
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | corecount: 8
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | event service: False
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | sizes: {0: 2280087, 1: 2281717, 11: 2281745, 3185: 2307297, 3186: 2316325, 3188: 2316735}
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | --------------------------------------------------
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | 
[2026-03-31 15:06:35] 2026-03-31 13:05:42,717 | INFO     | executing command: ls -lF /tmp/job_11441312/atlas/pilot/slots/0
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | job 7073091326 has completed (purged errors)
[2026-03-31 15:06:35] 2026-03-31 13:05:42,730 | INFO     | overall cleanup function is called
[2026-03-31 15:06:35] 2026-03-31 13:05:43,736 | INFO     | --- collectZombieJob: --- 10, [9579]
[2026-03-31 15:06:35] 2026-03-31 13:05:43,736 | INFO     | zombie collector waiting for pid 9579
[2026-03-31 15:06:35] 2026-03-31 13:05:43,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 15:06:35] 2026-03-31 13:05:43,736 | INFO     | collected zombie processes
[2026-03-31 15:06:35] 2026-03-31 13:05:43,736 | INFO     | will attempt to kill all subprocesses of pid=9579
[2026-03-31 15:06:35] 2026-03-31 13:05:43,919 | INFO     | process IDs to be killed: [9579] (in reverse order)
[2026-03-31 15:06:35] 2026-03-31 13:05:43,979 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 15:06:35] 2026-03-31 13:05:43,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 15:06:35] 2026-03-31 13:05:43,986 | INFO     | did not find any defunct processes belonging to 9579
[2026-03-31 15:06:35] 2026-03-31 13:05:43,991 | INFO     | did not find any defunct processes belonging to 9579
[2026-03-31 15:06:35] 2026-03-31 13:05:43,991 | INFO     | Ready for new job
[2026-03-31 15:06:35] 2026-03-31 13:05:43,992 | INFO     | **************************************
[2026-03-31 15:06:35] 2026-03-31 13:05:43,992 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 15:06:35] 2026-03-31 13:05:43,992 | INFO     | **************************************
[2026-03-31 15:06:35] 2026-03-31 13:05:43,992 | INFO     | 
[2026-03-31 15:06:35] 2026-03-31 13:05:44,008 | INFO     | architecture information:
[2026-03-31 15:06:35] 2026-03-31 13:05:44,008 | INFO     | executing command: cat /etc/os-release
[2026-03-31 15:06:35] 2026-03-31 13:05:44,016 | INFO     | cat /etc/os-release:
[2026-03-31 15:06:35] NAME="CentOS Linux"
[2026-03-31 15:06:35] VERSION="7 (Core)"
[2026-03-31 15:06:35] ID="centos"
[2026-03-31 15:06:35] ID_LIKE="rhel fedora"
[2026-03-31 15:06:35] VERSION_ID="7"
[2026-03-31 15:06:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 15:06:35] ANSI_COLOR="0;31"
[2026-03-31 15:06:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 15:06:35] HOME_URL="https://www.centos.org/"
[2026-03-31 15:06:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 15:06:35] 
[2026-03-31 15:06:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 15:06:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 15:06:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 15:06:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 15:06:35] 
[2026-03-31 15:06:35] 2026-03-31 13:05:44,017 | INFO     | **************************************
[2026-03-31 15:06:35] 2026-03-31 13:05:44,519 | INFO     | executing command: df -mP /tmp/job_11441312/atlas/pilot/slots/0
[2026-03-31 15:06:35] 2026-03-31 13:05:44,527 | INFO     | sufficient remaining disk space (223153750016 B)
[2026-03-31 15:06:35] 2026-03-31 13:05:44,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 15:06:35] 2026-03-31 13:05:44,527 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 15:06:35] 2026-03-31 13:05:44,527 | INFO     | update_server=False
[2026-03-31 15:06:35] 2026-03-31 13:05:44,527 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 15:06:35] 2026-03-31 13:05:44,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 15:06:35] 2026-03-31 13:05:44,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 15:06:35] 2026-03-31 13:05:44,609 | INFO     | all payload control threads have been joined
[2026-03-31 15:06:35] 2026-03-31 13:05:44,818 | INFO     | job.realtimelogging is not enabled
[2026-03-31 15:06:35] 2026-03-31 13:05:44,818 | INFO     | all data control threads have been joined
[2026-03-31 15:06:35] 2026-03-31 13:05:45,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 15:06:35] 2026-03-31 13:05:45,431 | INFO     | aborting loop
[2026-03-31 15:06:35] 2026-03-31 13:05:45,533 | INFO     | [job] retrieve thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,533 | INFO     | [job] queue monitor thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,537 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,614 | INFO     | [payload] control thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,709 | INFO     | [data] copytool_in thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,731 | INFO     | [payload] validate_post thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,811 | INFO     | all job control threads have been joined
[2026-03-31 15:06:35] 2026-03-31 13:05:45,823 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,823 | INFO     | [data] control thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:45,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 15:06:35] 2026-03-31 13:05:46,434 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:46,436 | INFO     | [job] job monitor thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:46,748 | INFO     | [payload] failed_post thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:46,807 | INFO     | [job] validate thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:46,816 | INFO     | [job] control thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:46,932 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:47,883 | INFO     | [data] copytool_out thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:05:48,533 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 15:06:35] 2026-03-31 13:06:15,004 | INFO     | PID=18399 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-31 15:06:35] 2026-03-31 13:06:15,004 | INFO     | .. there are 7 such processes running
[2026-03-31 15:06:35] 2026-03-31 13:06:15,005 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 15:06:35] 2026-03-31 13:06:15,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 15:06:35] 2026-03-31 13:06:15,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 15:06:35] 2026-03-31 13:06:28,431 | INFO     | [monitor] cgroup control has ended
[2026-03-31 15:06:35] 2026-03-31 13:06:30,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058726144)>']
[2026-03-31 15:06:35] 2026-03-31 13:06:31,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 15:06:35] 2026-03-31 13:06:31,084 | INFO     | [monitor] control thread has ended
[2026-03-31 15:06:35] 2026-03-31 13:06:35,408 | INFO     | all workflow threads have been joined
[2026-03-31 15:06:35] 2026-03-31 13:06:35,408 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 15:06:35] 2026-03-31 13:06:35,408 | INFO     | traces error code: 0
[2026-03-31 15:06:35] 2026-03-31 13:06:35,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 15:06:35] 2026-03-31 13:06:35,468 [wrapper] ==== pilot stdout END ====
[2026-03-31 15:06:35] 2026-03-31 13:06:35,470 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 15:06:35] 2026-03-31 13:06:35,471 [wrapper] pilotpid: 18399
[2026-03-31 15:06:35] 2026-03-31 13:06:35,473 [wrapper] Pilot exit status: 0
[2026-03-31 15:06:35] 2026-03-31 13:06:35,477 [wrapper] pandaids: 7073091326
[2026-03-31 15:06:35] 2026-03-31 13:06:35,515 [wrapper] cleanup supervisor_pilot 18147 18400
[2026-03-31 15:06:35] 2026-03-31 13:06:35,516 [wrapper] Test setup, not cleaning
[2026-03-31 15:06:35] 2026-03-31 13:06:35,517 [wrapper] apfmon messages muted
[2026-03-31 15:06:35] 2026-03-31 13:06:35,519 [wrapper] ==== wrapper stdout END ====
[2026-03-31 15:06:35] 2026-03-31 13:06:35,520 [wrapper] ==== wrapper stderr END ====
[2026-03-31 15:06:35]  *** Error codes and diagnostics ***
[2026-03-31 15:06:35]     "exeErrorCode": 0,
[2026-03-31 15:06:35]     "pilotErrorCode": 0,
[2026-03-31 15:06:35]  *** Listing of results directory ***
[2026-03-31 15:06:35] total 405824
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user    644034 Mar 31 09:16 pilot3.tar.gz
[2026-03-31 15:06:35] -rwx------ 1 mf493845 unix-user     36322 Mar 31 09:17 runpilot2-wrapper.sh
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      5118 Mar 31 09:18 queuedata.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user       100 Mar 31 13:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 15:06:35] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 31 13:15 run_atlas
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user       105 Mar 31 13:15 job.xml
[2026-03-31 15:06:35] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 31 14:12 start_atlas.sh
[2026-03-31 15:06:35] drwxrwx--x 2 mf493845 unix-user       100 Mar 31 14:12 shared
[2026-03-31 15:06:35] -rw-r--r-- 2 mf493845 unix-user    656750 Mar 31 14:12 input.tar.gz
[2026-03-31 15:06:35] -rw-r--r-- 2 mf493845 unix-user 223780132 Mar 31 14:12 EVNT.49263206._000578.pool.root.1
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user         0 Mar 31 14:12 boinc_setup_complete
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      6388 Mar 31 14:12 init_data.xml
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      8192 Mar 31 14:12 boinc_mmap_file
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user         0 Mar 31 14:12 boinc_lockfile
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      2575 Mar 31 14:12 pandaJob.out
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user   1003225 Mar 31 14:12 agis_schedconf.cvmfs.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user   1511579 Mar 31 14:12 agis_ddmendpoints.agis.ALL.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user       418 Mar 31 14:12 workernode_map.json
[2026-03-31 15:06:35] drwx------ 5 mf493845 unix-user       480 Mar 31 14:12 pilot3
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user 186469807 Mar 31 15:05 HITS.49263208._013223.pool.root.1
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user        95 Mar 31 15:05 pilot_heartbeat.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      1009 Mar 31 15:05 memory_monitor_summary.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user    301615 Mar 31 15:05 log.49263208._013223.job.log.tgz.1
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      6318 Mar 31 15:05 heartbeat_new.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      6208 Mar 31 15:05 heartbeat.json
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      4902 Mar 31 15:06 pilotlog.txt
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user    340641 Mar 31 15:06 log.49263208._013223.job.log.1
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user       357 Mar 31 15:06 output.list
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user       620 Mar 31 15:06 runtime_log
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user    655360 Mar 31 15:06 result.tar.gz
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user      9219 Mar 31 15:06 runtime_log.err
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user       636 Mar 31 15:06 56QLDmEXiR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmORQKDmbZwqDm.diag
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user     21455 Mar 31 15:06 stderr.txt
[2026-03-31 15:06:35] HITS file was successfully produced:
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user 186469807 Mar 31 15:05 shared/HITS.pool.root.1
[2026-03-31 15:06:35]  *** Contents of shared directory: ***
[2026-03-31 15:06:35] total 401936
[2026-03-31 15:06:35] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 31 14:12 start_atlas.sh
[2026-03-31 15:06:35] -rw-r--r-- 2 mf493845 unix-user    656750 Mar 31 14:12 input.tar.gz
[2026-03-31 15:06:35] -rw-r--r-- 2 mf493845 unix-user 223780132 Mar 31 14:12 ATLAS.root_0
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user 186469807 Mar 31 15:05 HITS.pool.root.1
[2026-03-31 15:06:35] -rw------- 1 mf493845 unix-user    655360 Mar 31 15:06 result.tar.gz
15:06:37 (11654): run_atlas exited; CPU time 23059.269342
15:06:37 (11654): called boinc_finish(0)

</stderr_txt>
]]>

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