Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:29:03 (2270374): wrapper (7.7.26015): starting
06:29:03 (2270374): wrapper: running run_atlas (--nthreads 8)
[2026-03-31 06:29:03] Arguments: --nthreads 8
[2026-03-31 06:29:03] Threads: 8
[2026-03-31 06:29:03] Checking for CVMFS
[2026-03-31 06:29:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 06:29:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 06:29:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 06:29:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 06:29:03] 2.13.3.0 5545 170590 483144 157914 1 707 20772868 32935937 8828 16776704 0 441571734 99.571 587552001 29176 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-31 06:29:03] CVMFS is ok
[2026-03-31 06:29:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 06:29:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 06:29:03] Further information can be found at the LHC@home message board.
[2026-03-31 06:29:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 06:29:03] Checking for apptainer binary...
[2026-03-31 06:29:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 06:29:03] Running /usr/bin/apptainer --version
[2026-03-31 06:29:03] apptainer version 1.4.5-2.el9
[2026-03-31 06:29:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 06:29:03] c6-1-26-3.aglt2.org
[2026-03-31 06:29:03] apptainer works
[2026-03-31 06:29:03] Set ATHENA_PROC_NUMBER=8
[2026-03-31 06:29:03] Set ATHENA_CORE_NUMBER=8
[2026-03-31 06:29:03] Starting ATLAS job with PandaID=7073093558
[2026-03-31 06:29:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 11:20:24]  *** The last 200 lines of the pilot log: ***
[2026-03-31 11:20:24] 2026-03-31 15:19:50,772 | INFO     | sum of deviations: 169308543214.98572
[2026-03-31 11:20:24] 2026-03-31 15:19:50,773 | INFO     | mean x (centered): 0.0
[2026-03-31 11:20:24] 2026-03-31 15:19:50,773 | INFO     | mean y: 2243917.557142857
[2026-03-31 11:20:24] 2026-03-31 15:19:50,773 | INFO     | intersect: 2243917.557142857
[2026-03-31 11:20:24] 2026-03-31 15:19:50,774 | INFO     | chi2: 2.029079243785107
[2026-03-31 11:20:24] 2026-03-31 15:19:50,774 | INFO     | current chi2=2.029079243785107 (change=0.050962806292285036 %)
[2026-03-31 11:20:24] 2026-03-31 15:19:50,774 | INFO     | right removable region: 279
[2026-03-31 11:20:24] 2026-03-31 15:19:50,775 | INFO     | sum of square deviations: 6806453382.710735
[2026-03-31 11:20:24] 2026-03-31 15:19:50,778 | INFO     | sum of deviations: 120493831502.1929
[2026-03-31 11:20:24] 2026-03-31 15:19:50,778 | INFO     | mean x (centered): 0.0
[2026-03-31 11:20:24] 2026-03-31 15:19:50,778 | INFO     | mean y: 2269274.9785714285
[2026-03-31 11:20:24] 2026-03-31 15:19:50,779 | INFO     | intersect: 2269274.9785714285
[2026-03-31 11:20:24] 2026-03-31 15:19:50,779 | INFO     | chi2: 0.2216649357287366
[2026-03-31 11:20:24] 2026-03-31 15:19:50,780 | INFO     | current chi2=0.2216649357287366 (change=89.08115739020457 %)
[2026-03-31 11:20:24] 2026-03-31 15:19:50,780 | INFO     | sum of square deviations: 6448224476.269047
[2026-03-31 11:20:24] 2026-03-31 15:19:50,783 | INFO     | sum of deviations: 105427133537.7563
[2026-03-31 11:20:24] 2026-03-31 15:19:50,783 | INFO     | mean x (centered): 0.0
[2026-03-31 11:20:24] 2026-03-31 15:19:50,783 | INFO     | mean y: 2275663.847272727
[2026-03-31 11:20:24] 2026-03-31 15:19:50,784 | INFO     | intersect: 2275663.847272727
[2026-03-31 11:20:24] 2026-03-31 15:19:50,785 | INFO     | chi2: 0.13583280484458163
[2026-03-31 11:20:24] 2026-03-31 15:19:50,785 | INFO     | current chi2=0.13583280484458163 (change=38.72156441972961 %)
[2026-03-31 11:20:24] 2026-03-31 15:19:50,785 | INFO     | sum of square deviations: 6102837076.55186
[2026-03-31 11:20:24] 2026-03-31 15:19:50,788 | INFO     | sum of deviations: 100712418716.75555
[2026-03-31 11:20:24] 2026-03-31 15:19:50,788 | INFO     | mean x (centered): 0.0
[2026-03-31 11:20:24] 2026-03-31 15:19:50,788 | INFO     | mean y: 2277742.0222222223
[2026-03-31 11:20:24] 2026-03-31 15:19:50,789 | INFO     | intersect: 2277742.0222222223
[2026-03-31 11:20:24] 2026-03-31 15:19:50,789 | INFO     | chi2: 0.13449456303027985
[2026-03-31 11:20:24] 2026-03-31 15:19:50,790 | INFO     | current chi2=0.13449456303027985 (change=0.9852125308263965 %)
[2026-03-31 11:20:24] 2026-03-31 15:19:50,790 | INFO     | left removable region: 15
[2026-03-31 11:20:24] 2026-03-31 15:19:50,791 | INFO     | sum of square deviations: 5704976073.257605
[2026-03-31 11:20:24] 2026-03-31 15:19:50,793 | INFO     | sum of deviations: 94471526091.2348
[2026-03-31 11:20:24] 2026-03-31 15:19:50,794 | INFO     | mean x (centered): 0.0
[2026-03-31 11:20:24] 2026-03-31 15:19:50,794 | INFO     | mean y: 2274862.768939394
[2026-03-31 11:20:24] 2026-03-31 15:19:50,794 | INFO     | intersect: 2274862.768939394
[2026-03-31 11:20:24] 2026-03-31 15:19:50,795 | INFO     | chi2: 0.13313676836854335
[2026-03-31 11:20:24] 2026-03-31 15:19:50,795 | INFO     | current memory leak: 16.56 B/s (using 264 data points, chi2=0.13)
[2026-03-31 11:20:24] 2026-03-31 15:19:50,796 | INFO     | could have reported an average CPU frequency of 2776 MHz (13 samples)
[2026-03-31 11:20:24] 2026-03-31 15:19:50,797 | INFO     | ..............................
[2026-03-31 11:20:24] 2026-03-31 15:19:50,797 | INFO     | . Timing measurements:
[2026-03-31 11:20:24] 2026-03-31 15:19:50,797 | INFO     | . get job = 0 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,797 | INFO     | . initial setup = 8 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,798 | INFO     | . payload setup = 31 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,798 | INFO     | . stage-in = 0 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,798 | INFO     | . payload execution = 17373 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,798 | INFO     | . stage-out = 2 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,798 | INFO     | . log creation = 0 s
[2026-03-31 11:20:24] 2026-03-31 15:19:50,798 | INFO     | ..............................
[2026-03-31 11:20:24] 2026-03-31 15:19:51,027 | WARNING  | process 2280666 can no longer be monitored (due to stat problems) - aborting
[2026-03-31 11:20:24] 2026-03-31 15:19:51,027 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7073093558/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,028 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7073093558/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,029 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-31 11:20:24] 2026-03-31 15:19:51,029 | WARNING  | maxPSS not found in memory monitor output
[2026-03-31 11:20:24] 2026-03-31 15:19:51,030 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3338605 B
[2026-03-31 11:20:24] 2026-03-31 15:19:51,030 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15600 B
[2026-03-31 11:20:24] 2026-03-31 15:19:51,030 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-31 11:20:24] 2026-03-31 15:19:51,046 | INFO     | sufficient remaining disk space (75817287680 B)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,046 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,048 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-7073093558: 3718724 B (within 5033164800 B limit)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,048 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-7073093558/HITS.49263208._013714.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,048 | INFO     | total size of present files: 0 B (workdir size: 3718724 B)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,048 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-7073093558/HITS.49263208._013714.pool.root.1 since it does not exist
[2026-03-31 11:20:24] 2026-03-31 15:19:51,386 | INFO     | 
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | job summary report
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | --------------------------------------------------
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | PanDA job id: 7073093558
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | task id: 49263208
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | errors: (none)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-31 11:20:24] 2026-03-31 15:19:51,387 | INFO     | pilot state: finished 
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | transexitcode: 0
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | exeerrorcode: 0
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | exeerrordiag: 
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | exitcode: 0
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | exitmsg: OK
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | cpuconsumptiontime: 45369 s
[2026-03-31 11:20:24] 2026-03-31 15:19:51,388 | INFO     | nevents: 400
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | neventsw: 0
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | pid: 2280666
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | pgrp: 2280666
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | corecount: 8
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | event service: False
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | sizes: {0: 2279790, 1: 2281619, 12: 2281619, 17408: 2313771, 17409: 2313770, 17411: 2322824, 17414: 2323008, 17415: 2323202}
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | --------------------------------------------------
[2026-03-31 11:20:24] 2026-03-31 15:19:51,389 | INFO     | 
[2026-03-31 11:20:24] 2026-03-31 15:19:51,390 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-31 11:20:24] 2026-03-31 15:19:51,401 | INFO     | number of running child processes to parent process 2280666: 1
[2026-03-31 11:20:24] 2026-03-31 15:19:51,402 | INFO     | maximum number of monitored processes: 6
[2026-03-31 11:20:24] 2026-03-31 15:19:51,402 | INFO     | aborting job monitoring since job object (job id=7073093558) has expired
[2026-03-31 11:20:24] 2026-03-31 15:19:51,414 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,414 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,415 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,415 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,416 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | job 7073093558 has completed (purged errors)
[2026-03-31 11:20:24] 2026-03-31 15:19:51,417 | INFO     | overall cleanup function is called
[2026-03-31 11:20:24] 2026-03-31 15:19:52,424 | INFO     | --- collectZombieJob: --- 10, [2280666]
[2026-03-31 11:20:24] 2026-03-31 15:19:52,425 | INFO     | zombie collector waiting for pid 2280666
[2026-03-31 11:20:24] 2026-03-31 15:19:52,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 11:20:24] 2026-03-31 15:19:52,425 | INFO     | collected zombie processes
[2026-03-31 11:20:24] 2026-03-31 15:19:52,425 | INFO     | will attempt to kill all subprocesses of pid=2280666
[2026-03-31 11:20:24] 2026-03-31 15:19:52,791 | INFO     | process IDs to be killed: [2280666] (in reverse order)
[2026-03-31 11:20:24] 2026-03-31 15:19:52,894 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 11:20:24] 2026-03-31 15:19:52,895 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 11:20:24] 2026-03-31 15:19:52,909 | INFO     | did not find any defunct processes belonging to 2280666
[2026-03-31 11:20:24] 2026-03-31 15:19:52,923 | INFO     | did not find any defunct processes belonging to 2280666
[2026-03-31 11:20:24] 2026-03-31 15:19:52,923 | INFO     | Ready for new job
[2026-03-31 11:20:24] 2026-03-31 15:19:52,926 | INFO     | **************************************
[2026-03-31 11:20:24] 2026-03-31 15:19:52,926 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 11:20:24] 2026-03-31 15:19:52,926 | INFO     | **************************************
[2026-03-31 11:20:24] 2026-03-31 15:19:52,926 | INFO     | 
[2026-03-31 11:20:24] 2026-03-31 15:19:52,942 | INFO     | architecture information:
[2026-03-31 11:20:24] 2026-03-31 15:19:52,943 | INFO     | executing command: cat /etc/os-release
[2026-03-31 11:20:24] 2026-03-31 15:19:52,959 | INFO     | cat /etc/os-release:
[2026-03-31 11:20:24] NAME="CentOS Linux"
[2026-03-31 11:20:24] VERSION="7 (Core)"
[2026-03-31 11:20:24] ID="centos"
[2026-03-31 11:20:24] ID_LIKE="rhel fedora"
[2026-03-31 11:20:24] VERSION_ID="7"
[2026-03-31 11:20:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 11:20:24] ANSI_COLOR="0;31"
[2026-03-31 11:20:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 11:20:24] HOME_URL="https://www.centos.org/"
[2026-03-31 11:20:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 11:20:24] 
[2026-03-31 11:20:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 11:20:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 11:20:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 11:20:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 11:20:24] 
[2026-03-31 11:20:24] 2026-03-31 15:19:52,959 | INFO     | **************************************
[2026-03-31 11:20:24] 2026-03-31 15:19:53,462 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-31 11:20:24] 2026-03-31 15:19:53,483 | INFO     | sufficient remaining disk space (75822530560 B)
[2026-03-31 11:20:24] 2026-03-31 15:19:53,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 11:20:24] 2026-03-31 15:19:53,485 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 11:20:24] 2026-03-31 15:19:53,485 | INFO     | update_server=False
[2026-03-31 11:20:24] 2026-03-31 15:19:53,485 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 11:20:24] 2026-03-31 15:19:53,667 | INFO     | all data control threads have been joined
[2026-03-31 11:20:24] 2026-03-31 15:19:53,904 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-31 11:20:24] 2026-03-31 15:19:53,905 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-31 11:20:24] 2026-03-31 15:19:53,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 11:20:24] 2026-03-31 15:19:53,905 | INFO     | will abort loop
[2026-03-31 11:20:24] 2026-03-31 15:19:54,212 | INFO     | [monitor] cgroup control has ended
[2026-03-31 11:20:24] 2026-03-31 15:19:54,387 | INFO     | all payload control threads have been joined
[2026-03-31 11:20:24] 2026-03-31 15:19:54,491 | INFO     | [job] retrieve thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:54,673 | INFO     | [data] control thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:54,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 11:20:24] 2026-03-31 15:19:54,679 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:54,825 | INFO     | [payload] validate_post thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:54,863 | INFO     | all job control threads have been joined
[2026-03-31 11:20:24] 2026-03-31 15:19:54,911 | INFO     | [job] job monitor thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:54,944 | INFO     | [job] validate thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,104 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,322 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,344 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,346 | INFO     | [data] copytool_in thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,392 | INFO     | [payload] control thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,661 | INFO     | [payload] failed_post thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 11:20:24] 2026-03-31 15:19:55,869 | INFO     | [job] control thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:55,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 11:20:24] 2026-03-31 15:19:56,679 | INFO     | [data] copytool_out thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:56,908 | INFO     | [job] queue monitor thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:19:59,717 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 11:20:24] 2026-03-31 15:20:01,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783717963584)>', '<ExcThread(monitor, started 139783351277312)>']
[2026-03-31 11:20:24] 2026-03-31 15:20:06,239 | INFO     | all workflow threads have been joined
[2026-03-31 11:20:24] 2026-03-31 15:20:06,240 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 11:20:24] 2026-03-31 15:20:06,240 | INFO     | traces error code: 0
[2026-03-31 11:20:24] 2026-03-31 15:20:06,241 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 11:20:24] 2026-03-31 15:20:24,008 | INFO     | PID=2274130 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 11:20:24] 2026-03-31 15:20:24,008 | INFO     | .. there are 9 such processes running
[2026-03-31 11:20:24] 2026-03-31 15:20:24,009 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 11:20:24] 2026-03-31 15:20:24,010 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 11:20:24] 2026-03-31 15:20:24,010 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 11:20:24] 2026-03-31 15:20:24,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 11:20:24] 2026-03-31 15:20:24,010 | INFO     | [monitor] control thread has ended
[2026-03-31 11:20:24] 2026-03-31 15:20:24,209 [wrapper] ==== pilot stdout END ====
[2026-03-31 11:20:24] 2026-03-31 15:20:24,212 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 11:20:24] 2026-03-31 15:20:24,215 [wrapper] pilotpid: 2274130
[2026-03-31 11:20:24] 2026-03-31 15:20:24,218 [wrapper] Pilot exit status: 0
[2026-03-31 11:20:24] 2026-03-31 15:20:24,234 [wrapper] pandaids: 7073093558
[2026-03-31 11:20:24] 2026-03-31 15:20:24,300 [wrapper] cleanup supervisor_pilot 2873853 2274131
[2026-03-31 11:20:24] 2026-03-31 15:20:24,304 [wrapper] Test setup, not cleaning
[2026-03-31 11:20:24] 2026-03-31 15:20:24,308 [wrapper] apfmon messages muted
[2026-03-31 11:20:24] 2026-03-31 15:20:24,310 [wrapper] ==== wrapper stdout END ====
[2026-03-31 11:20:24] 2026-03-31 15:20:24,312 [wrapper] ==== wrapper stderr END ====
[2026-03-31 11:20:24]  *** Error codes and diagnostics ***
[2026-03-31 11:20:24]     "exeErrorCode": 0,
[2026-03-31 11:20:24]     "pilotErrorCode": 0,
[2026-03-31 11:20:24]  *** Listing of results directory ***
[2026-03-31 11:20:24] total 422208
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas      5118 Mar 31 04:26 queuedata.json
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas    644034 Mar 31 04:26 pilot3.tar.gz
[2026-03-31 11:20:24] -rwx------. 1 boincer umatlas     36322 Mar 31 04:27 runpilot2-wrapper.sh
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas       100 Mar 31 06:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 11:20:24] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 31 06:29 run_atlas
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas       105 Mar 31 06:29 job.xml
[2026-03-31 11:20:24] -rw-r--r--. 2 boincer umatlas 222527305 Mar 31 06:29 EVNT.49263206._000598.pool.root.1
[2026-03-31 11:20:24] -rw-r--r--. 2 boincer umatlas     15845 Mar 31 06:29 start_atlas.sh
[2026-03-31 11:20:24] drwxrwx--x. 2 boincer umatlas      4096 Mar 31 06:29 shared
[2026-03-31 11:20:24] -rw-r--r--. 2 boincer umatlas    656750 Mar 31 06:29 input.tar.gz
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas         0 Mar 31 06:29 boinc_lockfile
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas      2575 Mar 31 06:29 pandaJob.out
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas        57 Mar 31 06:29 setup.sh.local
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas   1003225 Mar 31 06:29 agis_schedconf.cvmfs.json
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas       442 Mar 31 06:29 workernode_map.json
[2026-03-31 11:20:24] drwx------. 5 boincer umatlas      4096 Mar 31 06:29 pilot3
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas 202055789 Mar 31 11:19 HITS.49263208._013714.pool.root.1
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas       529 Mar 31 11:19 boinc_task_state.xml
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas      1039 Mar 31 11:19 memory_monitor_summary.json
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas   1511579 Mar 31 11:19 agis_ddmendpoints.agis.ALL.json
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas    421209 Mar 31 11:19 log.49263208._013714.job.log.tgz.1
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas      6410 Mar 31 11:19 heartbeat_new.json
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas      6301 Mar 31 11:19 heartbeat.json
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas        27 Mar 31 11:19 wrapper_checkpoint.txt
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas      6841 Mar 31 11:20 init_data.xml
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas        95 Mar 31 11:20 pilot_heartbeat.json
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas       822 Mar 31 11:20 pilotlog.txt
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas      8192 Mar 31 11:20 boinc_mmap_file
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas   1429291 Mar 31 11:20 log.49263208._013714.job.log.1
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas       357 Mar 31 11:20 output.list
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas       620 Mar 31 11:20 runtime_log
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas   1863680 Mar 31 11:20 result.tar.gz
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas      9347 Mar 31 11:20 runtime_log.err
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas       655 Mar 31 11:20 5ckKDmOcjR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmoXQKDmzyAp7m.diag
[2026-03-31 11:20:24] -rw-r--r--. 1 boincer umatlas     21708 Mar 31 11:20 stderr.txt
[2026-03-31 11:20:24] HITS file was successfully produced:
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas 202055789 Mar 31 11:19 shared/HITS.pool.root.1
[2026-03-31 11:20:24]  *** Contents of shared directory: ***
[2026-03-31 11:20:24] total 417124
[2026-03-31 11:20:24] -rw-r--r--. 2 boincer umatlas 222527305 Mar 31 06:29 ATLAS.root_0
[2026-03-31 11:20:24] -rw-r--r--. 2 boincer umatlas     15845 Mar 31 06:29 start_atlas.sh
[2026-03-31 11:20:24] -rw-r--r--. 2 boincer umatlas    656750 Mar 31 06:29 input.tar.gz
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas 202055789 Mar 31 11:19 HITS.pool.root.1
[2026-03-31 11:20:24] -rw-------. 1 boincer umatlas   1863680 Mar 31 11:20 result.tar.gz
11:20:25 (2270374): run_atlas exited; CPU time 45868.141155
11:20:25 (2270374): called boinc_finish(0)

</stderr_txt>
]]>

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