Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:10:26 (2831871): wrapper (7.7.26015): starting
05:10:26 (2831871): wrapper: running run_atlas (--nthreads 12)
[2026-04-01 05:10:26] Arguments: --nthreads 12
[2026-04-01 05:10:26] Threads: 12
[2026-04-01 05:10:26] Checking for CVMFS
[2026-04-01 05:10:26] No cvmfs_config command found, will try listing directly
[2026-04-01 05:10:26] CVMFS is ok
[2026-04-01 05:10:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 05:10:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 05:10:26] Further information can be found at the LHC@home message board.
[2026-04-01 05:10:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 05:10:26] Checking for apptainer binary...
[2026-04-01 05:10:26] which: no apptainer in ((null))
[2026-04-01 05:10:26] apptainer is not installed, using version from CVMFS
[2026-04-01 05:10:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 05:10:26] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-04-01 05:10:26] apptainer works
[2026-04-01 05:10:26] Set ATHENA_PROC_NUMBER=12
[2026-04-01 05:10:26] Set ATHENA_CORE_NUMBER=12
[2026-04-01 05:10:26] Starting ATLAS job with PandaID=7072603569
[2026-04-01 05:10:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 05:41:46]  *** The last 200 lines of the pilot log: ***
[2026-04-01 05:41:46] 2026-04-01 03:40:38,485 | INFO     |  -- lfn=log.49263191._009994.job.log.tgz.1, status_code=0, status=transferred
[2026-04-01 05:41:46] 2026-04-01 03:40:38,486 | INFO     | stage-out finished correctly
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | number of running child processes to parent process 2842229: 1
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | maximum number of monitored processes: 6
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | will send heartbeat for job in 'finished' state
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | note: will only send 'running' state to server to prevent sending any final state too early
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | log transfer has been attempted: DONE
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | job 7072603569 has state 'running' - writing heartbeat
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1400178/.job.ad'
[2026-04-01 05:41:46] 2026-04-01 03:40:38,633 | INFO     | total number of processed events: 400 (read)
[2026-04-01 05:41:46] 2026-04-01 03:40:38,651 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072603569/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 05:41:46] 2026-04-01 03:40:38,651 | INFO     | extracted standard info from prmon json
[2026-04-01 05:41:46] 2026-04-01 03:40:38,651 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 05:41:46] 2026-04-01 03:40:38,651 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 05:41:46] 2026-04-01 03:40:38,651 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | fitting pss+swap vs Time
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | sum of square deviations: 3765652.0
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | sum of deviations: 104120473.00000001
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | mean x (centered): 0.0
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | mean y: 2685452.7391304346
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | intersect: 2685452.7391304346
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | chi2: 0.00019106815929893135
[2026-04-01 05:41:46] 2026-04-01 03:40:38,652 | INFO     | current memory leak: 27.65 B/s (using 23 data points, chi2=0.00)
[2026-04-01 05:41:46] 2026-04-01 03:40:38,653 | INFO     | could have reported an average CPU frequency of 3622 MHz (4 samples)
[2026-04-01 05:41:46] 2026-04-01 03:40:40,409 | INFO     | PID=2836437 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-01 05:41:46] 2026-04-01 03:40:40,409 | INFO     | .. there are 14 such processes running
[2026-04-01 05:41:46] 2026-04-01 03:40:40,660 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-01 05:41:46] 2026-04-01 03:40:41,157 | INFO     | monitor loop #137: job 0:7072603569 is in state 'finished'
[2026-04-01 05:41:46] 2026-04-01 03:40:41,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,076 | INFO     | job 7072603569 has state=finished
[2026-04-01 05:41:46] 2026-04-01 03:40:42,076 | INFO     | preparing for final server update for job 7072603569 in state='finished'
[2026-04-01 05:41:46] 2026-04-01 03:40:42,507 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,507 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072603569/jobReport.json
[2026-04-01 05:41:46] 2026-04-01 03:40:42,509 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/1/workernode_map.json
[2026-04-01 05:41:46] 2026-04-01 03:40:42,510 | INFO     | this job has now completed (state=finished)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,510 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,510 | INFO     | log transfer has been attempted: DONE
[2026-04-01 05:41:46] 2026-04-01 03:40:42,510 | INFO     | job 7072603569 has finished - writing final server update
[2026-04-01 05:41:46] 2026-04-01 03:40:42,510 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1400178/.job.ad'
[2026-04-01 05:41:46] 2026-04-01 03:40:42,510 | INFO     | total number of processed events: 400 (read)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,527 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7072603569/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,528 | INFO     | extracted standard info from prmon json
[2026-04-01 05:41:46] 2026-04-01 03:40:42,528 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 05:41:46] 2026-04-01 03:40:42,528 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 05:41:46] 2026-04-01 03:40:42,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | fitting pss+swap vs Time
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | sum of square deviations: 3765652.0
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | sum of deviations: 104120473.00000001
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | mean x (centered): 0.0
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | mean y: 2685452.7391304346
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | intersect: 2685452.7391304346
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | chi2: 0.00019106815929893135
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | current memory leak: 27.65 B/s (using 23 data points, chi2=0.00)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | could have reported an average CPU frequency of 3622 MHz (5 samples)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | ..............................
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . Timing measurements:
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . get job = 0 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . initial setup = 4 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . payload setup = 6 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . stage-in = 0 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . payload execution = 1779 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . stage-out = 0 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | . log creation = 0 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,529 | INFO     | ..............................
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | 
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | job summary report
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | --------------------------------------------------
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | PanDA job id: 7072603569
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | task id: 49263191
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | errors: (none)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | pilot state: finished 
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | transexitcode: 0
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | exeerrorcode: 0
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | exeerrordiag: 
[2026-04-01 05:41:46] 2026-04-01 03:40:42,578 | INFO     | exitcode: 0
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | exitmsg: OK
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | cpuconsumptiontime: 18221 s
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | nevents: 400
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | neventsw: 0
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | pid: 2842229
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | pgrp: 2842229
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | corecount: 12
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | event service: False
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | sizes: {0: 2281601, 11: 2281601, 1788: 2306496, 1789: 2306495, 1790: 2315573, 1792: 2315823, 1794: 2316007}
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | --------------------------------------------------
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | 
[2026-04-01 05:41:46] 2026-04-01 03:40:42,579 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/1
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,599 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 05:41:46] 2026-04-01 03:40:42,600 | INFO     | job 7072603569 has completed (purged errors)
[2026-04-01 05:41:46] 2026-04-01 03:40:42,600 | INFO     | overall cleanup function is called
[2026-04-01 05:41:46] 2026-04-01 03:40:43,604 | INFO     | --- collectZombieJob: --- 10, [2842229]
[2026-04-01 05:41:46] 2026-04-01 03:40:43,604 | INFO     | zombie collector waiting for pid 2842229
[2026-04-01 05:41:46] 2026-04-01 03:40:43,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 05:41:46] 2026-04-01 03:40:43,604 | INFO     | collected zombie processes
[2026-04-01 05:41:46] 2026-04-01 03:40:43,604 | INFO     | will attempt to kill all subprocesses of pid=2842229
[2026-04-01 05:41:46] 2026-04-01 03:40:43,952 | INFO     | process IDs to be killed: [2842229] (in reverse order)
[2026-04-01 05:41:46] 2026-04-01 03:40:44,096 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 05:41:46] 2026-04-01 03:40:44,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 05:41:46] 2026-04-01 03:40:44,119 | INFO     | did not find any defunct processes belonging to 2842229
[2026-04-01 05:41:46] 2026-04-01 03:40:44,140 | INFO     | did not find any defunct processes belonging to 2842229
[2026-04-01 05:41:46] 2026-04-01 03:40:44,140 | INFO     | Ready for new job
[2026-04-01 05:41:46] 2026-04-01 03:40:44,141 | INFO     | **************************************
[2026-04-01 05:41:46] 2026-04-01 03:40:44,144 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-04-01 05:41:46] 2026-04-01 03:40:44,144 | INFO     | **************************************
[2026-04-01 05:41:46] 2026-04-01 03:40:44,144 | INFO     | 
[2026-04-01 05:41:46] 2026-04-01 03:40:44,150 | INFO     | architecture information:
[2026-04-01 05:41:46] 2026-04-01 03:40:44,150 | INFO     | executing command: cat /etc/os-release
[2026-04-01 05:41:46] 2026-04-01 03:40:44,163 | INFO     | cat /etc/os-release:
[2026-04-01 05:41:46] NAME="CentOS Linux"
[2026-04-01 05:41:46] VERSION="7 (Core)"
[2026-04-01 05:41:46] ID="centos"
[2026-04-01 05:41:46] ID_LIKE="rhel fedora"
[2026-04-01 05:41:46] VERSION_ID="7"
[2026-04-01 05:41:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 05:41:46] ANSI_COLOR="0;31"
[2026-04-01 05:41:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 05:41:46] HOME_URL="https://www.centos.org/"
[2026-04-01 05:41:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 05:41:46] 
[2026-04-01 05:41:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 05:41:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 05:41:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 05:41:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 05:41:46] 
[2026-04-01 05:41:46] 2026-04-01 03:40:44,164 | INFO     | **************************************
[2026-04-01 05:41:46] 2026-04-01 03:40:44,666 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/1
[2026-04-01 05:41:46] 2026-04-01 03:40:44,682 | INFO     | sufficient remaining disk space (265978642432 B)
[2026-04-01 05:41:46] 2026-04-01 03:40:44,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 05:41:46] 2026-04-01 03:40:44,683 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 05:41:46] 2026-04-01 03:40:44,683 | INFO     | update_server=False
[2026-04-01 05:41:46] 2026-04-01 03:40:44,683 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-01 05:41:46] 2026-04-01 03:40:44,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 05:41:46] 2026-04-01 03:40:44,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 05:41:46] 2026-04-01 03:40:44,684 | INFO     | aborting loop
[2026-04-01 05:41:46] 2026-04-01 03:40:45,144 | INFO     | all data control threads have been joined
[2026-04-01 05:41:46] 2026-04-01 03:40:45,290 | INFO     | all job control threads have been joined
[2026-04-01 05:41:46] 2026-04-01 03:40:45,688 | INFO     | [job] retrieve thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:45,689 | INFO     | [job] job monitor thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:45,888 | INFO     | [payload] validate_post thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:45,898 | INFO     | all payload control threads have been joined
[2026-04-01 05:41:46] 2026-04-01 03:40:46,144 | INFO     | [job] validate thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,149 | INFO     | [data] control thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,253 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,254 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,264 | INFO     | [payload] failed_post thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,295 | INFO     | [job] control thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,501 | INFO     | [data] copytool_in thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,689 | INFO     | [data] copytool_out thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 05:41:46] 2026-04-01 03:40:46,809 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:46,903 | INFO     | [payload] control thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:47,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 05:41:46] 2026-04-01 03:40:48,592 | INFO     | [job] queue monitor thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:50,715 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:40:55,221 | INFO     | job.realtimelogging is not enabled
[2026-04-01 05:41:46] 2026-04-01 03:40:56,227 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 05:41:46] 2026-04-01 03:41:14,922 | INFO     | PID=2836437 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 05:41:46] 2026-04-01 03:41:14,922 | INFO     | .. there are 12 such processes running
[2026-04-01 05:41:46] 2026-04-01 03:41:14,922 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 05:41:46] 2026-04-01 03:41:14,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 05:41:46] 2026-04-01 03:41:14,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 05:41:46] 2026-04-01 03:41:39,614 | INFO     | [monitor] cgroup control has ended
[2026-04-01 05:41:46] 2026-04-01 03:41:41,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23443305043776)>', '<ExcThread(monitor, started 23442998937344)>']
[2026-04-01 05:41:46] 2026-04-01 03:41:42,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 05:41:46] 2026-04-01 03:41:42,022 | INFO     | [monitor] control thread has ended
[2026-04-01 05:41:46] 2026-04-01 03:41:46,054 | INFO     | all workflow threads have been joined
[2026-04-01 05:41:46] 2026-04-01 03:41:46,055 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 05:41:46] 2026-04-01 03:41:46,055 | INFO     | traces error code: 0
[2026-04-01 05:41:46] 2026-04-01 03:41:46,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 05:41:46] 2026-04-01 03:41:46,161 [wrapper] ==== pilot stdout END ====
[2026-04-01 05:41:46] 2026-04-01 03:41:46,163 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 05:41:46] 2026-04-01 03:41:46,165 [wrapper] pilotpid: 2836437
[2026-04-01 05:41:46] 2026-04-01 03:41:46,167 [wrapper] Pilot exit status: 0
[2026-04-01 05:41:46] 2026-04-01 03:41:46,172 [wrapper] pandaids: 7072603569
[2026-04-01 05:41:46] 2026-04-01 03:41:46,252 [wrapper] cleanup supervisor_pilot 3079888 2836438
[2026-04-01 05:41:46] 2026-04-01 03:41:46,254 [wrapper] Test setup, not cleaning
[2026-04-01 05:41:46] 2026-04-01 03:41:46,256 [wrapper] apfmon messages muted
[2026-04-01 05:41:46] 2026-04-01 03:41:46,258 [wrapper] ==== wrapper stdout END ====
[2026-04-01 05:41:46] 2026-04-01 03:41:46,260 [wrapper] ==== wrapper stderr END ====
[2026-04-01 05:41:46]  *** Error codes and diagnostics ***
[2026-04-01 05:41:46]     "exeErrorCode": 0,
[2026-04-01 05:41:46]     "pilotErrorCode": 0,
[2026-04-01 05:41:46]  *** Listing of results directory ***
[2026-04-01 05:41:46] total 420508
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc    644034 Mar 31 01:47 pilot3.tar.gz
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc      5118 Mar 31 01:50 queuedata.json
[2026-04-01 05:41:46] -rwx------. 1 boinc boinc     36322 Mar 31 01:50 runpilot2-wrapper.sh
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc       100 Apr  1 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 05:41:46] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 05:10 run_atlas
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc       105 Apr  1 05:10 job.xml
[2026-04-01 05:41:46] -rw-r--r--. 2 boinc boinc     15845 Apr  1 05:10 start_atlas.sh
[2026-04-01 05:41:46] drwxrwx--x. 2 boinc boinc      4096 Apr  1 05:10 shared
[2026-04-01 05:41:46] -rw-r--r--. 2 boinc boinc    656752 Apr  1 05:10 input.tar.gz
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc      6713 Apr  1 05:10 init_data.xml
[2026-04-01 05:41:46] -rw-r--r--. 2 boinc boinc 223744820 Apr  1 05:10 EVNT.49263189._000425.pool.root.1
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc         0 Apr  1 05:10 boinc_lockfile
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc      2575 Apr  1 05:10 pandaJob.out
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc   1005014 Apr  1 05:10 agis_schedconf.cvmfs.json
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc   1511579 Apr  1 05:10 agis_ddmendpoints.agis.ALL.json
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc       442 Apr  1 05:10 workernode_map.json
[2026-04-01 05:41:46] drwx------. 5 boinc boinc      4096 Apr  1 05:10 pilot3
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc       529 Apr  1 05:40 boinc_task_state.xml
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc 201670242 Apr  1 05:40 HITS.49263191._009994.pool.root.1
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc      1029 Apr  1 05:40 memory_monitor_summary.json
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc    344223 Apr  1 05:40 log.49263191._009994.job.log.tgz.1
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc      6375 Apr  1 05:40 heartbeat_new.json
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc      6266 Apr  1 05:40 heartbeat.json
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc        95 Apr  1 05:41 pilot_heartbeat.json
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc      4902 Apr  1 05:41 pilotlog.txt
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc      8192 Apr  1 05:41 boinc_mmap_file
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc        27 Apr  1 05:41 wrapper_checkpoint.txt
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc    216564 Apr  1 05:41 log.49263191._009994.job.log.1
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc       357 Apr  1 05:41 output.list
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc       620 Apr  1 05:41 runtime_log
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc    573440 Apr  1 05:41 result.tar.gz
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc      9223 Apr  1 05:41 runtime_log.err
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc       659 Apr  1 05:41 K2PMDmgYbR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmrNPKDmZ7Ti2n.diag
[2026-04-01 05:41:46] -rw-r--r--. 1 boinc boinc     21768 Apr  1 05:41 stderr.txt
[2026-04-01 05:41:46] HITS file was successfully produced:
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc 201670242 Apr  1 05:40 shared/HITS.pool.root.1
[2026-04-01 05:41:46]  *** Contents of shared directory: ***
[2026-04-01 05:41:46] total 416676
[2026-04-01 05:41:46] -rw-r--r--. 2 boinc boinc     15845 Apr  1 05:10 start_atlas.sh
[2026-04-01 05:41:46] -rw-r--r--. 2 boinc boinc    656752 Apr  1 05:10 input.tar.gz
[2026-04-01 05:41:46] -rw-r--r--. 2 boinc boinc 223744820 Apr  1 05:10 ATLAS.root_0
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc 201670242 Apr  1 05:40 HITS.pool.root.1
[2026-04-01 05:41:46] -rw-------. 1 boinc boinc    573440 Apr  1 05:41 result.tar.gz
05:41:48 (2831871): run_atlas exited; CPU time 18277.230026
05:41:48 (2831871): called boinc_finish(0)

</stderr_txt>
]]>

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