Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:48:00 (2014299): wrapper (7.7.26015): starting
20:48:00 (2014299): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 20:48:00] Arguments: --nthreads 2
[2026-03-31 20:48:00] Threads: 2
[2026-03-31 20:48:00] Checking for CVMFS
[2026-03-31 20:48:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 20:48:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 20:48:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 20:48:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 20:48:01] 2.9.2.0 1552346 4948 57016 157928 3 50 30516610 36864000 0 130560 0 1774922 99.981 183588 15288 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 20:48:01] CVMFS is ok
[2026-03-31 20:48:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 20:48:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 20:48:01] Further information can be found at the LHC@home message board.
[2026-03-31 20:48:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 20:48:01] Checking for apptainer binary...
[2026-03-31 20:48:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 20:48:01] Running /usr/bin/apptainer --version
[2026-03-31 20:48:01] apptainer version 1.4.1-1.1
[2026-03-31 20:48:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 20:48:01] thA337
[2026-03-31 20:48:01] apptainer works
[2026-03-31 20:48:01] Set ATHENA_PROC_NUMBER=2
[2026-03-31 20:48:01] Set ATHENA_CORE_NUMBER=2
[2026-03-31 20:48:01] Starting ATLAS job with PandaID=7073089921
[2026-03-31 20:48:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 22:57:59]  *** The last 200 lines of the pilot log: ***
[2026-03-31 22:57:59] 2026-03-31 20:57:27,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,995 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 22:57:59] 2026-03-31 20:57:27,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,995 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 22:57:59] 2026-03-31 20:57:27,995 | INFO     | job 7073089921 has completed (purged errors)
[2026-03-31 22:57:59] 2026-03-31 20:57:27,995 | INFO     | overall cleanup function is called
[2026-03-31 22:57:59] 2026-03-31 20:57:28,997 | INFO     | --- collectZombieJob: --- 10, [2022736]
[2026-03-31 22:57:59] 2026-03-31 20:57:28,998 | INFO     | zombie collector waiting for pid 2022736
[2026-03-31 22:57:59] 2026-03-31 20:57:28,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 22:57:59] 2026-03-31 20:57:28,998 | INFO     | collected zombie processes
[2026-03-31 22:57:59] 2026-03-31 20:57:28,998 | INFO     | will attempt to kill all subprocesses of pid=2022736
[2026-03-31 22:57:59] 2026-03-31 20:57:29,029 | INFO     | process IDs to be killed: [2022736] (in reverse order)
[2026-03-31 22:57:59] 2026-03-31 20:57:29,051 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 22:57:59] 2026-03-31 20:57:29,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 22:57:59] 2026-03-31 20:57:29,055 | INFO     | did not find any defunct processes belonging to 2022736
[2026-03-31 22:57:59] 2026-03-31 20:57:29,058 | INFO     | did not find any defunct processes belonging to 2022736
[2026-03-31 22:57:59] 2026-03-31 20:57:29,058 | INFO     | Ready for new job
[2026-03-31 22:57:59] 2026-03-31 20:57:29,060 | INFO     | **************************************
[2026-03-31 22:57:59] 2026-03-31 20:57:29,060 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 22:57:59] 2026-03-31 20:57:29,061 | INFO     | **************************************
[2026-03-31 22:57:59] 2026-03-31 20:57:29,061 | INFO     | 
[2026-03-31 22:57:59] 2026-03-31 20:57:29,062 | INFO     | architecture information:
[2026-03-31 22:57:59] 2026-03-31 20:57:29,063 | INFO     | executing command: cat /etc/os-release
[2026-03-31 22:57:59] 2026-03-31 20:57:29,092 | INFO     | cat /etc/os-release:
[2026-03-31 22:57:59] NAME="CentOS Linux"
[2026-03-31 22:57:59] VERSION="7 (Core)"
[2026-03-31 22:57:59] ID="centos"
[2026-03-31 22:57:59] ID_LIKE="rhel fedora"
[2026-03-31 22:57:59] VERSION_ID="7"
[2026-03-31 22:57:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 22:57:59] ANSI_COLOR="0;31"
[2026-03-31 22:57:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 22:57:59] HOME_URL="https://www.centos.org/"
[2026-03-31 22:57:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 22:57:59] 
[2026-03-31 22:57:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 22:57:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 22:57:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 22:57:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 22:57:59] 
[2026-03-31 22:57:59] 2026-03-31 20:57:29,093 | INFO     | **************************************
[2026-03-31 22:57:59] 2026-03-31 20:57:29,596 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 22:57:59] 2026-03-31 20:57:29,609 | INFO     | sufficient remaining disk space (481620393984 B)
[2026-03-31 22:57:59] 2026-03-31 20:57:29,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 22:57:59] 2026-03-31 20:57:29,609 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 22:57:59] 2026-03-31 20:57:29,609 | INFO     | update_server=False
[2026-03-31 22:57:59] 2026-03-31 20:57:29,609 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 22:57:59] 2026-03-31 20:57:29,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 22:57:59] 2026-03-31 20:57:29,686 | INFO     | all job control threads have been joined
[2026-03-31 22:57:59] 2026-03-31 20:57:29,815 | INFO     | all data control threads have been joined
[2026-03-31 22:57:59] 2026-03-31 20:57:29,972 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-31 22:57:59] 2026-03-31 20:57:29,973 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-31 22:57:59] 2026-03-31 20:57:29,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 22:57:59] 2026-03-31 20:57:29,974 | INFO     | will abort loop
[2026-03-31 22:57:59] 2026-03-31 20:57:30,610 | INFO     | [job] retrieve thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:30,614 | INFO     | [job] queue monitor thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:30,692 | INFO     | [job] control thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:30,700 | INFO     | [payload] validate_post thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:30,821 | INFO     | [data] control thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:30,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 22:57:59] 2026-03-31 20:57:30,980 | INFO     | [job] job monitor thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:31,073 | INFO     | all payload control threads have been joined
[2026-03-31 22:57:59] 2026-03-31 20:57:31,594 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:31,610 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:31,684 | INFO     | [job] validate thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:31,723 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:31,772 | INFO     | [payload] failed_post thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:32,056 | INFO     | [data] copytool_in thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:32,078 | INFO     | [payload] control thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:32,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 22:57:59] 2026-03-31 20:57:32,982 | INFO     | [data] copytool_out thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:33,633 | INFO     | [monitor] cgroup control has ended
[2026-03-31 22:57:59] 2026-03-31 20:57:36,106 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:40,551 | INFO     | job.realtimelogging is not enabled
[2026-03-31 22:57:59] 2026-03-31 20:57:41,557 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 22:57:59] 2026-03-31 20:57:41,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067488147264)>', '<ExcThread(monitor, started 140066835904256)>']
[2026-03-31 22:57:59] 2026-03-31 20:57:46,809 | INFO     | all workflow threads have been joined
[2026-03-31 22:57:59] 2026-03-31 20:57:46,809 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 22:57:59] 2026-03-31 20:57:46,809 | INFO     | traces error code: 0
[2026-03-31 22:57:59] 2026-03-31 20:57:46,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 22:57:59] 2026-03-31 20:57:59,236 | INFO     | PID=2018325 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 22:57:59] 2026-03-31 20:57:59,236 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 22:57:59] 2026-03-31 20:57:59,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 22:57:59] 2026-03-31 20:57:59,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 22:57:59] 2026-03-31 20:57:59,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 22:57:59] 2026-03-31 20:57:59,236 | INFO     | [monitor] control thread has ended
[2026-03-31 22:57:59] 2026-03-31 20:57:59,276 [wrapper] ==== pilot stdout END ====
[2026-03-31 22:57:59] 2026-03-31 20:57:59,278 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 22:57:59] 2026-03-31 20:57:59,281 [wrapper] pilotpid: 2018325
[2026-03-31 22:57:59] 2026-03-31 20:57:59,283 [wrapper] Pilot exit status: 0
[2026-03-31 22:57:59] 2026-03-31 20:57:59,289 [wrapper] pandaids: 7073089921
[2026-03-31 22:57:59] 2026-03-31 20:57:59,302 [wrapper] cleanup supervisor_pilot 2028213 2018326
[2026-03-31 22:57:59] 2026-03-31 20:57:59,304 [wrapper] Test setup, not cleaning
[2026-03-31 22:57:59] 2026-03-31 20:57:59,306 [wrapper] apfmon messages muted
[2026-03-31 22:57:59] 2026-03-31 20:57:59,308 [wrapper] ==== wrapper stdout END ====
[2026-03-31 22:57:59] 2026-03-31 20:57:59,310 [wrapper] ==== wrapper stderr END ====
[2026-03-31 22:57:59]  *** Error codes and diagnostics ***
[2026-03-31 22:57:59]     "exeErrorCode": 0,
[2026-03-31 22:57:59]     "pilotErrorCode": 0,
[2026-03-31 22:57:59]  *** Listing of results directory ***
[2026-03-31 22:57:59] total 415988
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc    644034 Mar 31 09:16 pilot3.tar.gz
[2026-03-31 22:57:59] -rwx------ 1 boinc boinc     36322 Mar 31 09:16 runpilot2-wrapper.sh
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc      5118 Mar 31 09:16 queuedata.json
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc       100 Mar 31 20:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 22:57:59] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 20:48 run_atlas
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc       105 Mar 31 20:48 job.xml
[2026-03-31 22:57:59] -rw-r--r-- 2 boinc boinc 221855581 Mar 31 20:48 EVNT.49263206._000559.pool.root.1
[2026-03-31 22:57:59] -rw-r--r-- 2 boinc boinc    656748 Mar 31 20:48 input.tar.gz
[2026-03-31 22:57:59] -rw-r--r-- 2 boinc boinc     15845 Mar 31 20:48 start_atlas.sh
[2026-03-31 22:57:59] drwxrwx--x 2 boinc boinc      4096 Mar 31 20:48 shared
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc         0 Mar 31 20:48 boinc_setup_complete
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc      6205 Mar 31 20:48 init_data.xml
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc         0 Mar 31 20:48 boinc_lockfile
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc      2572 Mar 31 20:48 pandaJob.out
[2026-03-31 22:57:59] -rw------- 1 boinc boinc   1005006 Mar 31 20:48 agis_schedconf.cvmfs.json
[2026-03-31 22:57:59] -rw------- 1 boinc boinc   1511579 Mar 31 20:48 agis_ddmendpoints.agis.ALL.json
[2026-03-31 22:57:59] -rw------- 1 boinc boinc       418 Mar 31 20:48 workernode_map.json
[2026-03-31 22:57:59] drwx------ 5 boinc boinc      4096 Mar 31 20:48 pilot3
[2026-03-31 22:57:59] -rw------- 1 boinc boinc 198153627 Mar 31 22:57 HITS.49263208._012726.pool.root.1
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc       529 Mar 31 22:57 boinc_task_state.xml
[2026-03-31 22:57:59] -rw------- 1 boinc boinc      1015 Mar 31 22:57 memory_monitor_summary.json
[2026-03-31 22:57:59] -rw------- 1 boinc boinc    223028 Mar 31 22:57 log.49263208._012726.job.log.tgz.1
[2026-03-31 22:57:59] -rw------- 1 boinc boinc      6309 Mar 31 22:57 heartbeat_new.json
[2026-03-31 22:57:59] -rw------- 1 boinc boinc      6200 Mar 31 22:57 heartbeat.json
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc      8192 Mar 31 22:57 boinc_mmap_file
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc        27 Mar 31 22:57 wrapper_checkpoint.txt
[2026-03-31 22:57:59] -rw------- 1 boinc boinc       747 Mar 31 22:57 pilotlog.txt
[2026-03-31 22:57:59] -rw------- 1 boinc boinc        95 Mar 31 22:57 pilot_heartbeat.json
[2026-03-31 22:57:59] -rw------- 1 boinc boinc    736309 Mar 31 22:57 log.49263208._012726.job.log.1
[2026-03-31 22:57:59] -rw------- 1 boinc boinc       357 Mar 31 22:57 output.list
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc       620 Mar 31 22:57 runtime_log
[2026-03-31 22:57:59] -rw------- 1 boinc boinc    972800 Mar 31 22:57 result.tar.gz
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc      8896 Mar 31 22:57 runtime_log.err
[2026-03-31 22:57:59] -rw------- 1 boinc boinc       658 Mar 31 22:57 YdIKDmyViR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmVMQKDm7zYx8n.diag
[2026-03-31 22:57:59] -rw-r--r-- 1 boinc boinc     11829 Mar 31 22:57 stderr.txt
[2026-03-31 22:57:59] HITS file was successfully produced:
[2026-03-31 22:57:59] -rw------- 1 boinc boinc 198153627 Mar 31 22:57 shared/HITS.pool.root.1
[2026-03-31 22:57:59]  *** Contents of shared directory: ***
[2026-03-31 22:57:59] total 411784
[2026-03-31 22:57:59] -rw-r--r-- 2 boinc boinc 221855581 Mar 31 20:48 ATLAS.root_0
[2026-03-31 22:57:59] -rw-r--r-- 2 boinc boinc    656748 Mar 31 20:48 input.tar.gz
[2026-03-31 22:57:59] -rw-r--r-- 2 boinc boinc     15845 Mar 31 20:48 start_atlas.sh
[2026-03-31 22:57:59] -rw------- 1 boinc boinc 198153627 Mar 31 22:57 HITS.pool.root.1
[2026-03-31 22:57:59] -rw------- 1 boinc boinc    972800 Mar 31 22:57 result.tar.gz
22:58:00 (2014299): run_atlas exited; CPU time 14891.717594
22:58:00 (2014299): called boinc_finish(0)

</stderr_txt>
]]>

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