Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:14 (1986251): wrapper (7.7.26015): starting
16:32:14 (1986251): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 16:32:14] Arguments: --nthreads 2
[2026-03-31 16:32:14] Threads: 2
[2026-03-31 16:32:14] Checking for CVMFS
[2026-03-31 16:32:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 16:32:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 16:32:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 16:32:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 16:32:15] 2.9.2.0 1552346 4692 55808 157914 2 188 30467439 36864001 0 130560 0 1663606 99.981 168851 15046 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 16:32:15] CVMFS is ok
[2026-03-31 16:32:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 16:32:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 16:32:15] Further information can be found at the LHC@home message board.
[2026-03-31 16:32:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 16:32:15] Checking for apptainer binary...
[2026-03-31 16:32:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 16:32:15] Running /usr/bin/apptainer --version
[2026-03-31 16:32:15] apptainer version 1.4.1-1.1
[2026-03-31 16:32:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 16:32:15] thA337
[2026-03-31 16:32:15] apptainer works
[2026-03-31 16:32:15] Set ATHENA_PROC_NUMBER=2
[2026-03-31 16:32:15] Set ATHENA_CORE_NUMBER=2
[2026-03-31 16:32:15] Starting ATLAS job with PandaID=7072874632
[2026-03-31 16:32:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 18:42:53]  *** The last 200 lines of the pilot log: ***
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | job 7072874632 has completed (purged errors)
[2026-03-31 18:42:53] 2026-03-31 16:42:01,902 | INFO     | overall cleanup function is called
[2026-03-31 18:42:53] 2026-03-31 16:42:02,908 | INFO     | --- collectZombieJob: --- 10, [1994698]
[2026-03-31 18:42:53] 2026-03-31 16:42:02,909 | INFO     | zombie collector waiting for pid 1994698
[2026-03-31 18:42:53] 2026-03-31 16:42:02,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 18:42:53] 2026-03-31 16:42:02,909 | INFO     | collected zombie processes
[2026-03-31 18:42:53] 2026-03-31 16:42:02,909 | INFO     | will attempt to kill all subprocesses of pid=1994698
[2026-03-31 18:42:53] 2026-03-31 16:42:02,940 | INFO     | process IDs to be killed: [1994698] (in reverse order)
[2026-03-31 18:42:53] 2026-03-31 16:42:02,961 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 18:42:53] 2026-03-31 16:42:02,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 18:42:53] 2026-03-31 16:42:02,961 | INFO     | did not find any defunct processes belonging to 1994698
[2026-03-31 18:42:53] 2026-03-31 16:42:02,962 | INFO     | did not find any defunct processes belonging to 1994698
[2026-03-31 18:42:53] 2026-03-31 16:42:02,962 | INFO     | Ready for new job
[2026-03-31 18:42:53] 2026-03-31 16:42:02,963 | INFO     | **************************************
[2026-03-31 18:42:53] 2026-03-31 16:42:02,963 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 18:42:53] 2026-03-31 16:42:02,963 | INFO     | **************************************
[2026-03-31 18:42:53] 2026-03-31 16:42:02,963 | INFO     | 
[2026-03-31 18:42:53] 2026-03-31 16:42:02,963 | INFO     | architecture information:
[2026-03-31 18:42:53] 2026-03-31 16:42:02,963 | INFO     | executing command: cat /etc/os-release
[2026-03-31 18:42:53] 2026-03-31 16:42:02,972 | INFO     | cat /etc/os-release:
[2026-03-31 18:42:53] NAME="CentOS Linux"
[2026-03-31 18:42:53] VERSION="7 (Core)"
[2026-03-31 18:42:53] ID="centos"
[2026-03-31 18:42:53] ID_LIKE="rhel fedora"
[2026-03-31 18:42:53] VERSION_ID="7"
[2026-03-31 18:42:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 18:42:53] ANSI_COLOR="0;31"
[2026-03-31 18:42:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 18:42:53] HOME_URL="https://www.centos.org/"
[2026-03-31 18:42:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 18:42:53] 
[2026-03-31 18:42:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 18:42:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 18:42:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 18:42:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 18:42:53] 
[2026-03-31 18:42:53] 2026-03-31 16:42:02,972 | INFO     | **************************************
[2026-03-31 18:42:53] 2026-03-31 16:42:03,476 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 18:42:53] 2026-03-31 16:42:03,487 | INFO     | sufficient remaining disk space (481191526400 B)
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | INFO     | update_server=False
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | INFO     | aborting loop
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 18:42:53] 2026-03-31 16:42:03,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 18:42:53] 2026-03-31 16:42:03,538 | INFO     | all payload control threads have been joined
[2026-03-31 18:42:53] 2026-03-31 16:42:04,065 | INFO     | all data control threads have been joined
[2026-03-31 18:42:53] 2026-03-31 16:42:04,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 18:42:53] 2026-03-31 16:42:04,494 | INFO     | [job] retrieve thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:04,494 | INFO     | [job] queue monitor thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:04,495 | INFO     | [job] job monitor thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:04,544 | INFO     | [payload] control thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:04,701 | INFO     | [data] copytool_in thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:04,819 | INFO     | [payload] validate_post thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:04,856 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:05,071 | INFO     | [data] control thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:05,158 | INFO     | all job control threads have been joined
[2026-03-31 18:42:53] 2026-03-31 16:42:05,825 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:05,902 | INFO     | [job] validate thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:05,920 | INFO     | [payload] failed_post thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:05,926 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:05,965 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:06,097 | INFO     | [data] copytool_out thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:06,164 | INFO     | [job] control thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:07,495 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 18:42:53] 2026-03-31 16:42:47,401 | INFO     | [monitor] cgroup control has ended
[2026-03-31 18:42:53] 2026-03-31 16:42:48,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220793341760)>', '<ExcThread(monitor, started 140219944793856)>']
[2026-03-31 18:42:53] 2026-03-31 16:42:48,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 18:42:53] 2026-03-31 16:42:48,723 | INFO     | [monitor] control thread has ended
[2026-03-31 18:42:53] 2026-03-31 16:42:53,582 | INFO     | all workflow threads have been joined
[2026-03-31 18:42:53] 2026-03-31 16:42:53,582 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 18:42:53] 2026-03-31 16:42:53,583 | INFO     | traces error code: 0
[2026-03-31 18:42:53] 2026-03-31 16:42:53,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 18:42:53] 2026-03-31 16:42:53,626 [wrapper] ==== pilot stdout END ====
[2026-03-31 18:42:53] 2026-03-31 16:42:53,629 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 18:42:53] 2026-03-31 16:42:53,631 [wrapper] pilotpid: 1990281
[2026-03-31 18:42:53] 2026-03-31 16:42:53,634 [wrapper] Pilot exit status: 0
[2026-03-31 18:42:53] 2026-03-31 16:42:53,641 [wrapper] pandaids: 7072874632
[2026-03-31 18:42:53] 2026-03-31 16:42:53,655 [wrapper] cleanup supervisor_pilot 2000169 1990282
[2026-03-31 18:42:53] 2026-03-31 16:42:53,657 [wrapper] Test setup, not cleaning
[2026-03-31 18:42:53] 2026-03-31 16:42:53,659 [wrapper] apfmon messages muted
[2026-03-31 18:42:53] 2026-03-31 16:42:53,662 [wrapper] ==== wrapper stdout END ====
[2026-03-31 18:42:53] 2026-03-31 16:42:53,663 [wrapper] ==== wrapper stderr END ====
[2026-03-31 18:42:53]  *** Error codes and diagnostics ***
[2026-03-31 18:42:53]     "exeErrorCode": 0,
[2026-03-31 18:42:53]     "pilotErrorCode": 0,
[2026-03-31 18:42:53]  *** Listing of results directory ***
[2026-03-31 18:42:53] total 424104
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc    644034 Mar 31 06:42 pilot3.tar.gz
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc      5118 Mar 31 06:44 queuedata.json
[2026-03-31 18:42:53] -rwx------ 1 boinc boinc     36322 Mar 31 06:44 runpilot2-wrapper.sh
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc       100 Mar 31 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 18:42:53] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 16:32 run_atlas
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc       105 Mar 31 16:32 job.xml
[2026-03-31 18:42:53] -rw-r--r-- 2 boinc boinc 226794024 Mar 31 16:32 EVNT.49263189._000513.pool.root.1
[2026-03-31 18:42:53] -rw-r--r-- 2 boinc boinc    656753 Mar 31 16:32 input.tar.gz
[2026-03-31 18:42:53] -rw-r--r-- 2 boinc boinc     15845 Mar 31 16:32 start_atlas.sh
[2026-03-31 18:42:53] drwxrwx--x 2 boinc boinc      4096 Mar 31 16:32 shared
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc         0 Mar 31 16:32 boinc_setup_complete
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc      6205 Mar 31 16:32 init_data.xml
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc         0 Mar 31 16:32 boinc_lockfile
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc      2577 Mar 31 16:32 pandaJob.out
[2026-03-31 18:42:53] -rw------- 1 boinc boinc   1003225 Mar 31 16:32 agis_schedconf.cvmfs.json
[2026-03-31 18:42:53] -rw------- 1 boinc boinc   1511579 Mar 31 16:32 agis_ddmendpoints.agis.ALL.json
[2026-03-31 18:42:53] -rw------- 1 boinc boinc       426 Mar 31 16:32 workernode_map.json
[2026-03-31 18:42:53] drwx------ 5 boinc boinc      4096 Mar 31 16:32 pilot3
[2026-03-31 18:42:53] -rw------- 1 boinc boinc 201466851 Mar 31 18:41 HITS.49263191._012823.pool.root.1
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc       529 Mar 31 18:41 boinc_task_state.xml
[2026-03-31 18:42:53] -rw------- 1 boinc boinc      1010 Mar 31 18:41 memory_monitor_summary.json
[2026-03-31 18:42:53] -rw------- 1 boinc boinc        95 Mar 31 18:42 pilot_heartbeat.json
[2026-03-31 18:42:53] -rw------- 1 boinc boinc    252402 Mar 31 18:42 log.49263191._012823.job.log.tgz.1
[2026-03-31 18:42:53] -rw------- 1 boinc boinc      6321 Mar 31 18:42 heartbeat_new.json
[2026-03-31 18:42:53] -rw------- 1 boinc boinc      6212 Mar 31 18:42 heartbeat.json
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc      8192 Mar 31 18:42 boinc_mmap_file
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc        27 Mar 31 18:42 wrapper_checkpoint.txt
[2026-03-31 18:42:53] -rw------- 1 boinc boinc      4551 Mar 31 18:42 pilotlog.txt
[2026-03-31 18:42:53] -rw------- 1 boinc boinc    736120 Mar 31 18:42 log.49263191._012823.job.log.1
[2026-03-31 18:42:53] -rw------- 1 boinc boinc       357 Mar 31 18:42 output.list
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc       620 Mar 31 18:42 runtime_log
[2026-03-31 18:42:53] -rw------- 1 boinc boinc   1003520 Mar 31 18:42 result.tar.gz
[2026-03-31 18:42:53] -rw------- 1 boinc boinc       658 Mar 31 18:42 yiZNDmw8fR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmH2PKDm9RT4Co.diag
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc      8896 Mar 31 18:42 runtime_log.err
[2026-03-31 18:42:53] -rw-r--r-- 1 boinc boinc     11637 Mar 31 18:42 stderr.txt
[2026-03-31 18:42:53] HITS file was successfully produced:
[2026-03-31 18:42:53] -rw------- 1 boinc boinc 201466851 Mar 31 18:41 shared/HITS.pool.root.1
[2026-03-31 18:42:53]  *** Contents of shared directory: ***
[2026-03-31 18:42:53] total 419872
[2026-03-31 18:42:53] -rw-r--r-- 2 boinc boinc 226794024 Mar 31 16:32 ATLAS.root_0
[2026-03-31 18:42:53] -rw-r--r-- 2 boinc boinc    656753 Mar 31 16:32 input.tar.gz
[2026-03-31 18:42:53] -rw-r--r-- 2 boinc boinc     15845 Mar 31 16:32 start_atlas.sh
[2026-03-31 18:42:53] -rw------- 1 boinc boinc 201466851 Mar 31 18:41 HITS.pool.root.1
[2026-03-31 18:42:53] -rw------- 1 boinc boinc   1003520 Mar 31 18:42 result.tar.gz
18:42:55 (1986251): run_atlas exited; CPU time 14912.337878
18:42:55 (1986251): called boinc_finish(0)

</stderr_txt>
]]>

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