Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:20:32 (3642282): wrapper (7.7.26015): starting
17:20:32 (3642282): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 17:20:32] Arguments: --nthreads 2
[2026-03-31 17:20:32] Threads: 2
[2026-03-31 17:20:32] Checking for CVMFS
[2026-03-31 17:20:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 17:20:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 17:20:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 17:20:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 17:20:33] 2.9.2.0 3201293 5498 59308 157914 0 188 19551703 36864001 0 130560 0 1749568 99.979 190166 16104 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 17:20:33] CVMFS is ok
[2026-03-31 17:20:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 17:20:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 17:20:33] Further information can be found at the LHC@home message board.
[2026-03-31 17:20:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 17:20:33] Checking for apptainer binary...
[2026-03-31 17:20:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 17:20:33] Running /usr/bin/apptainer --version
[2026-03-31 17:20:33] apptainer version 1.4.1-1.1
[2026-03-31 17:20:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 17:20:33] magicA244
[2026-03-31 17:20:33] apptainer works
[2026-03-31 17:20:33] Set ATHENA_PROC_NUMBER=2
[2026-03-31 17:20:33] Set ATHENA_CORE_NUMBER=2
[2026-03-31 17:20:33] Starting ATLAS job with PandaID=7074759492
[2026-03-31 17:20:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 19:43:00]  *** The last 200 lines of the pilot log: ***
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | job 7074759492 has completed (purged errors)
[2026-03-31 19:43:00] 2026-03-31 17:41:59,471 | INFO     | overall cleanup function is called
[2026-03-31 19:43:00] 2026-03-31 17:42:00,477 | INFO     | --- collectZombieJob: --- 10, [3650714]
[2026-03-31 19:43:00] 2026-03-31 17:42:00,477 | INFO     | zombie collector waiting for pid 3650714
[2026-03-31 19:43:00] 2026-03-31 17:42:00,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 19:43:00] 2026-03-31 17:42:00,477 | INFO     | collected zombie processes
[2026-03-31 19:43:00] 2026-03-31 17:42:00,477 | INFO     | will attempt to kill all subprocesses of pid=3650714
[2026-03-31 19:43:00] 2026-03-31 17:42:00,504 | INFO     | process IDs to be killed: [3650714] (in reverse order)
[2026-03-31 19:43:00] 2026-03-31 17:42:00,526 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 19:43:00] 2026-03-31 17:42:00,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 19:43:00] 2026-03-31 17:42:00,526 | INFO     | did not find any defunct processes belonging to 3650714
[2026-03-31 19:43:00] 2026-03-31 17:42:00,527 | INFO     | did not find any defunct processes belonging to 3650714
[2026-03-31 19:43:00] 2026-03-31 17:42:00,527 | INFO     | Ready for new job
[2026-03-31 19:43:00] 2026-03-31 17:42:00,528 | INFO     | **************************************
[2026-03-31 19:43:00] 2026-03-31 17:42:00,528 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 19:43:00] 2026-03-31 17:42:00,528 | INFO     | **************************************
[2026-03-31 19:43:00] 2026-03-31 17:42:00,528 | INFO     | 
[2026-03-31 19:43:00] 2026-03-31 17:42:00,528 | INFO     | architecture information:
[2026-03-31 19:43:00] 2026-03-31 17:42:00,528 | INFO     | executing command: cat /etc/os-release
[2026-03-31 19:43:00] 2026-03-31 17:42:00,538 | INFO     | cat /etc/os-release:
[2026-03-31 19:43:00] NAME="CentOS Linux"
[2026-03-31 19:43:00] VERSION="7 (Core)"
[2026-03-31 19:43:00] ID="centos"
[2026-03-31 19:43:00] ID_LIKE="rhel fedora"
[2026-03-31 19:43:00] VERSION_ID="7"
[2026-03-31 19:43:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 19:43:00] ANSI_COLOR="0;31"
[2026-03-31 19:43:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 19:43:00] HOME_URL="https://www.centos.org/"
[2026-03-31 19:43:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 19:43:00] 
[2026-03-31 19:43:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 19:43:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 19:43:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 19:43:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 19:43:00] 
[2026-03-31 19:43:00] 2026-03-31 17:42:00,538 | INFO     | **************************************
[2026-03-31 19:43:00] 2026-03-31 17:42:01,040 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 19:43:00] 2026-03-31 17:42:01,051 | INFO     | sufficient remaining disk space (505426214912 B)
[2026-03-31 19:43:00] 2026-03-31 17:42:01,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 19:43:00] 2026-03-31 17:42:01,051 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 19:43:00] 2026-03-31 17:42:01,051 | INFO     | update_server=False
[2026-03-31 19:43:00] 2026-03-31 17:42:01,051 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 19:43:00] 2026-03-31 17:42:01,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 19:43:00] 2026-03-31 17:42:01,052 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 19:43:00] 2026-03-31 17:42:01,065 | INFO     | all payload control threads have been joined
[2026-03-31 19:43:00] 2026-03-31 17:42:01,403 | INFO     | all data control threads have been joined
[2026-03-31 19:43:00] 2026-03-31 17:42:02,056 | INFO     | [job] retrieve thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,057 | INFO     | [job] queue monitor thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,070 | INFO     | [payload] control thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,232 | INFO     | all job control threads have been joined
[2026-03-31 19:43:00] 2026-03-31 17:42:02,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 19:43:00] 2026-03-31 17:42:02,408 | INFO     | [data] control thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,572 | INFO     | [job] validate thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,662 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,669 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,691 | INFO     | [data] copytool_in thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,734 | INFO     | [payload] failed_post thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:02,771 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:03,238 | INFO     | [job] control thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:03,266 | INFO     | [payload] validate_post thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:04,086 | WARNING  | process 3650714 can no longer be monitored (due to stat problems) - aborting
[2026-03-31 19:43:00] 2026-03-31 17:42:04,107 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 19:43:00] 2026-03-31 17:42:04,132 | INFO     | number of running child processes to parent process 3650714: 1
[2026-03-31 19:43:00] 2026-03-31 17:42:04,132 | INFO     | maximum number of monitored processes: 6
[2026-03-31 19:43:00] 2026-03-31 17:42:04,132 | INFO     | aborting job monitoring since job object (job id=7074759492) has expired
[2026-03-31 19:43:00] 2026-03-31 17:42:04,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 19:43:00] 2026-03-31 17:42:04,132 | INFO     | will abort loop
[2026-03-31 19:43:00] 2026-03-31 17:42:04,378 | INFO     | [data] copytool_out thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:05,057 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:05,071 | INFO     | job.realtimelogging is not enabled
[2026-03-31 19:43:00] 2026-03-31 17:42:05,138 | INFO     | [job] job monitor thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:06,076 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 19:43:00] 2026-03-31 17:42:31,642 | INFO     | PID=3646305 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 19:43:00] 2026-03-31 17:42:31,642 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 19:43:00] 2026-03-31 17:42:31,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 19:43:00] 2026-03-31 17:42:31,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 19:43:00] 2026-03-31 17:42:54,440 | INFO     | [monitor] cgroup control has ended
[2026-03-31 19:43:00] 2026-03-31 17:42:55,545 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780277905216)>', '<ExcThread(monitor, started 139779492534016)>']
[2026-03-31 19:43:00] 2026-03-31 17:42:55,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 19:43:00] 2026-03-31 17:42:55,764 | INFO     | [monitor] control thread has ended
[2026-03-31 19:43:00] 2026-03-31 17:43:00,570 | INFO     | all workflow threads have been joined
[2026-03-31 19:43:00] 2026-03-31 17:43:00,570 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 19:43:00] 2026-03-31 17:43:00,570 | INFO     | traces error code: 0
[2026-03-31 19:43:00] 2026-03-31 17:43:00,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 19:43:00] 2026-03-31 17:43:00,614 [wrapper] ==== pilot stdout END ====
[2026-03-31 19:43:00] 2026-03-31 17:43:00,617 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 19:43:00] 2026-03-31 17:43:00,620 [wrapper] pilotpid: 3646305
[2026-03-31 19:43:00] 2026-03-31 17:43:00,623 [wrapper] Pilot exit status: 0
[2026-03-31 19:43:00] 2026-03-31 17:43:00,629 [wrapper] pandaids: 7074759492
[2026-03-31 19:43:00] 2026-03-31 17:43:00,643 [wrapper] cleanup supervisor_pilot 3655642 3646306
[2026-03-31 19:43:00] 2026-03-31 17:43:00,646 [wrapper] Test setup, not cleaning
[2026-03-31 19:43:00] 2026-03-31 17:43:00,649 [wrapper] apfmon messages muted
[2026-03-31 19:43:00] 2026-03-31 17:43:00,651 [wrapper] ==== wrapper stdout END ====
[2026-03-31 19:43:00] 2026-03-31 17:43:00,654 [wrapper] ==== wrapper stderr END ====
[2026-03-31 19:43:00]  *** Error codes and diagnostics ***
[2026-03-31 19:43:00]     "exeErrorCode": 0,
[2026-03-31 19:43:00]     "pilotErrorCode": 0,
[2026-03-31 19:43:00]  *** Listing of results directory ***
[2026-03-31 19:43:00] total 448912
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc    644034 Mar 31 05:30 pilot3.tar.gz
[2026-03-31 19:43:00] -rwx------ 1 boinc boinc     36322 Mar 31 05:34 runpilot2-wrapper.sh
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc      5118 Mar 31 05:35 queuedata.json
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc       100 Mar 31 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 19:43:00] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 17:20 run_atlas
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc       105 Mar 31 17:20 job.xml
[2026-03-31 19:43:00] -rw-r--r-- 2 boinc boinc 266928458 Mar 31 17:20 EVNT.49474743._000008.pool.root.1
[2026-03-31 19:43:00] -rw-r--r-- 2 boinc boinc    656746 Mar 31 17:20 input.tar.gz
[2026-03-31 19:43:00] -rw-r--r-- 2 boinc boinc     15845 Mar 31 17:20 start_atlas.sh
[2026-03-31 19:43:00] drwxrwx--x 2 boinc boinc      4096 Mar 31 17:20 shared
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc         0 Mar 31 17:20 boinc_setup_complete
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc      6208 Mar 31 17:20 init_data.xml
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc         0 Mar 31 17:20 boinc_lockfile
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc      2579 Mar 31 17:20 pandaJob.out
[2026-03-31 19:43:00] -rw------- 1 boinc boinc   1003225 Mar 31 17:20 agis_schedconf.cvmfs.json
[2026-03-31 19:43:00] -rw------- 1 boinc boinc   1511579 Mar 31 17:20 agis_ddmendpoints.agis.ALL.json
[2026-03-31 19:43:00] -rw------- 1 boinc boinc       421 Mar 31 17:20 workernode_map.json
[2026-03-31 19:43:00] drwx------ 5 boinc boinc      4096 Mar 31 17:20 pilot3
[2026-03-31 19:43:00] -rw------- 1 boinc boinc 186589909 Mar 31 19:41 HITS.49499812._000191.pool.root.1
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc       529 Mar 31 19:41 boinc_task_state.xml
[2026-03-31 19:43:00] -rw------- 1 boinc boinc      1010 Mar 31 19:41 memory_monitor_summary.json
[2026-03-31 19:43:00] -rw------- 1 boinc boinc    251752 Mar 31 19:41 log.49499812._000191.job.log.tgz.1
[2026-03-31 19:43:00] -rw------- 1 boinc boinc      6301 Mar 31 19:41 heartbeat_new.json
[2026-03-31 19:43:00] -rw------- 1 boinc boinc      6192 Mar 31 19:41 heartbeat.json
[2026-03-31 19:43:00] -rw------- 1 boinc boinc        95 Mar 31 19:42 pilot_heartbeat.json
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc      8192 Mar 31 19:42 boinc_mmap_file
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc        27 Mar 31 19:42 wrapper_checkpoint.txt
[2026-03-31 19:43:00] -rw------- 1 boinc boinc      5343 Mar 31 19:43 pilotlog.txt
[2026-03-31 19:43:00] -rw------- 1 boinc boinc    801313 Mar 31 19:43 log.49499812._000191.job.log.1
[2026-03-31 19:43:00] -rw------- 1 boinc boinc       357 Mar 31 19:43 output.list
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc       620 Mar 31 19:43 runtime_log
[2026-03-31 19:43:00] -rw------- 1 boinc boinc   1075200 Mar 31 19:43 result.tar.gz
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc      8911 Mar 31 19:43 runtime_log.err
[2026-03-31 19:43:00] -rw------- 1 boinc boinc       662 Mar 31 19:43 pErMDmm2eR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmpxPKDmJ5t8Un.diag
[2026-03-31 19:43:00] -rw-r--r-- 1 boinc boinc     12759 Mar 31 19:43 stderr.txt
[2026-03-31 19:43:00] HITS file was successfully produced:
[2026-03-31 19:43:00] -rw------- 1 boinc boinc 186589909 Mar 31 19:41 shared/HITS.pool.root.1
[2026-03-31 19:43:00]  *** Contents of shared directory: ***
[2026-03-31 19:43:00] total 444612
[2026-03-31 19:43:00] -rw-r--r-- 2 boinc boinc 266928458 Mar 31 17:20 ATLAS.root_0
[2026-03-31 19:43:00] -rw-r--r-- 2 boinc boinc    656746 Mar 31 17:20 input.tar.gz
[2026-03-31 19:43:00] -rw-r--r-- 2 boinc boinc     15845 Mar 31 17:20 start_atlas.sh
[2026-03-31 19:43:00] -rw------- 1 boinc boinc 186589909 Mar 31 19:41 HITS.pool.root.1
[2026-03-31 19:43:00] -rw------- 1 boinc boinc   1075200 Mar 31 19:43 result.tar.gz
19:43:01 (3642282): run_atlas exited; CPU time 16334.023079
19:43:01 (3642282): called boinc_finish(0)

</stderr_txt>
]]>

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