Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:55:25 (3699614): wrapper (7.7.26015): starting
16:55:25 (3699614): wrapper: running run_atlas (--nthreads 12)
[2026-04-05 16:55:25] Arguments: --nthreads 12
[2026-04-05 16:55:25] Threads: 12
[2026-04-05 16:55:25] Checking for CVMFS
[2026-04-05 16:55:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-05 16:55:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-05 16:55:26] Running cvmfs_config stat atlas.cern.ch
[2026-04-05 16:55:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-05 16:55:27] 2.13.3.0 3021178 16462 77188 158118 1 188 2078140 4096001 10032 130560 0 81413957 99.987 986198 2212 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-04-05 16:55:27] CVMFS is ok
[2026-04-05 16:55:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 16:55:27] Checking for apptainer binary...
[2026-04-05 16:55:27] apptainer is not installed, using version from CVMFS
[2026-04-05 16:55:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 16:55:29] epyc7v12
[2026-04-05 16:55:29] apptainer works
[2026-04-05 16:55:29] Set ATHENA_PROC_NUMBER=12
[2026-04-05 16:55:29] Set ATHENA_CORE_NUMBER=12
[2026-04-05 16:55:29] Starting ATLAS job with PandaID=7072724611
[2026-04-05 16:55:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31428/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-05 18:12:28]  *** The last 200 lines of the pilot log: ***
[2026-04-05 18:12:28]  replicas=None
[2026-04-05 18:12:28]  scope=mc23_13p6TeV
[2026-04-05 18:12:28]  status=None
[2026-04-05 18:12:28]  status_code=0
[2026-04-05 18:12:28]  storage_token=
[2026-04-05 18:12:28]  surl=/opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/log.49263200._011600.job.log.tgz.1
[2026-04-05 18:12:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/e7/log.49263200._011600.job.log.tgz.1
[2026-04-05 18:12:28]  workdir=None
[2026-04-05 18:12:28] ]
[2026-04-05 18:12:28] 2026-04-05 18:11:24,740 | INFO     | transferring file log.49263200._011600.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/log.49263200._011600.job.log.tgz.1 t
[2026-04-05 18:12:28] 2026-04-05 18:11:24,740 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/log.49263200._011600.job.log.tgz.1 /opt/boinc/instance_home
[2026-04-05 18:12:28] 2026-04-05 18:11:24,795 | INFO     | adding to output.list: log.49263200._011600.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/e7/log.49263200._011600.job.log.tg
[2026-04-05 18:12:28] 2026-04-05 18:11:24,796 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-05 18:12:28] 2026-04-05 18:11:24,797 | INFO     | summary of transferred files:
[2026-04-05 18:12:28] 2026-04-05 18:11:24,797 | INFO     |  -- lfn=log.49263200._011600.job.log.tgz.1, status_code=0, status=transferred
[2026-04-05 18:12:28] 2026-04-05 18:11:24,797 | INFO     | stage-out finished correctly
[2026-04-05 18:12:28] 2026-04-05 18:11:25,079 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-05 18:12:28] 2026-04-05 18:11:25,290 | INFO     | job 7072724611 has state=finished
[2026-04-05 18:12:28] 2026-04-05 18:11:25,291 | INFO     | preparing for final server update for job 7072724611 in state='finished'
[2026-04-05 18:12:28] 2026-04-05 18:11:25,293 | INFO     | reading metadata from: /opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/jobReport.json
[2026-04-05 18:12:28] 2026-04-05 18:11:25,299 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31428/slots/0/workernode_map.json
[2026-04-05 18:12:28] 2026-04-05 18:11:25,299 | INFO     | this job has now completed (state=finished)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,299 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,299 | INFO     | log transfer has been attempted: DONE
[2026-04-05 18:12:28] 2026-04-05 18:11:25,299 | INFO     | job 7072724611 has finished - writing final server update
[2026-04-05 18:12:28] 2026-04-05 18:11:25,300 | INFO     | total number of processed events: 400 (read)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,362 | INFO     | using path: /opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,363 | INFO     | extracted standard info from prmon json
[2026-04-05 18:12:28] 2026-04-05 18:11:25,366 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 18:12:28] 2026-04-05 18:11:25,366 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 18:12:28] 2026-04-05 18:11:25,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 18:12:28] 2026-04-05 18:11:25,368 | INFO     | fitting pss+swap vs Time
[2026-04-05 18:12:28] 2026-04-05 18:11:25,369 | INFO     | sum of square deviations: 93240818.0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,369 | INFO     | sum of deviations: 448460532.00000006
[2026-04-05 18:12:28] 2026-04-05 18:11:25,369 | INFO     | mean x (centered): 0.0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,369 | INFO     | mean y: 2674728.417910448
[2026-04-05 18:12:28] 2026-04-05 18:11:25,369 | INFO     | intersect: 2674728.417910448
[2026-04-05 18:12:28] 2026-04-05 18:11:25,370 | INFO     | chi2: 0.037405658642858074
[2026-04-05 18:12:28] 2026-04-05 18:11:25,370 | INFO     | current memory leak: 4.81 B/s (using 67 data points, chi2=0.04)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,373 | INFO     | could have reported an average CPU frequency of 2387 MHz (6 samples)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,373 | INFO     | ..............................
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . Timing measurements:
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . get job = 0 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . initial setup = 15 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . payload setup = 20 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . stage-in = 0 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . payload execution = 4470 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . stage-out = 1 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | . log creation = 0 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,374 | INFO     | ..............................
[2026-04-05 18:12:28] 2026-04-05 18:11:25,588 | INFO     | 
[2026-04-05 18:12:28] 2026-04-05 18:11:25,588 | INFO     | job summary report
[2026-04-05 18:12:28] 2026-04-05 18:11:25,588 | INFO     | --------------------------------------------------
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | PanDA job id: 7072724611
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | task id: 49263200
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | errors: (none)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | pilot state: finished 
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | transexitcode: 0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | exeerrorcode: 0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | exeerrordiag: 
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | exitcode: 0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | exitmsg: OK
[2026-04-05 18:12:28] 2026-04-05 18:11:25,589 | INFO     | cpuconsumptiontime: 44531 s
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | nevents: 400
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | neventsw: 0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | pid: 3709120
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | pgrp: 3709120
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | corecount: 12
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | event service: False
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | sizes: {0: 2279813, 1: 2280068, 2: 2281642, 12: 2281670, 4495: 2307936, 4498: 2317302}
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | --------------------------------------------------
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | 
[2026-04-05 18:12:28] 2026-04-05 18:11:25,590 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31428/slots/0
[2026-04-05 18:12:28] 2026-04-05 18:11:25,658 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,659 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,659 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,659 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,659 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,659 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,660 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,661 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-05 18:12:28] 2026-04-05 18:11:25,661 | INFO     | job 7072724611 has completed (purged errors)
[2026-04-05 18:12:28] 2026-04-05 18:11:25,666 | INFO     | overall cleanup function is called
[2026-04-05 18:12:28] 2026-04-05 18:11:25,874 | INFO     | PID=3704139 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-05 18:12:28] 2026-04-05 18:11:25,874 | INFO     | .. there are 12 such processes running
[2026-04-05 18:12:28] 2026-04-05 18:11:26,693 | INFO     | --- collectZombieJob: --- 10, [3709120]
[2026-04-05 18:12:28] 2026-04-05 18:11:26,693 | INFO     | zombie collector waiting for pid 3709120
[2026-04-05 18:12:28] 2026-04-05 18:11:26,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-05 18:12:28] 2026-04-05 18:11:26,694 | INFO     | collected zombie processes
[2026-04-05 18:12:28] 2026-04-05 18:11:26,694 | INFO     | will attempt to kill all subprocesses of pid=3709120
[2026-04-05 18:12:28] 2026-04-05 18:11:27,679 | WARNING  | process 3709120 can no longer be monitored (due to stat problems) - aborting
[2026-04-05 18:12:28] 2026-04-05 18:11:28,144 | INFO     | process IDs to be killed: [3709120] (in reverse order)
[2026-04-05 18:12:28] 2026-04-05 18:11:28,469 | WARNING  | found no corresponding commands to process id(s)
[2026-04-05 18:12:28] 2026-04-05 18:11:28,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-05 18:12:28] 2026-04-05 18:11:28,524 | INFO     | did not find any defunct processes belonging to 3709120
[2026-04-05 18:12:28] 2026-04-05 18:11:28,553 | INFO     | did not find any defunct processes belonging to 3709120
[2026-04-05 18:12:28] 2026-04-05 18:11:28,554 | INFO     | Ready for new job
[2026-04-05 18:12:28] 2026-04-05 18:11:28,559 | INFO     | **************************************
[2026-04-05 18:12:28] 2026-04-05 18:11:28,559 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-04-05 18:12:28] 2026-04-05 18:11:28,559 | INFO     | **************************************
[2026-04-05 18:12:28] 2026-04-05 18:11:28,559 | INFO     | 
[2026-04-05 18:12:28] 2026-04-05 18:11:28,577 | INFO     | architecture information:
[2026-04-05 18:12:28] 2026-04-05 18:11:28,579 | INFO     | executing command: cat /etc/os-release
[2026-04-05 18:12:28] 2026-04-05 18:11:28,621 | INFO     | cat /etc/os-release:
[2026-04-05 18:12:28] NAME="CentOS Linux"
[2026-04-05 18:12:28] VERSION="7 (Core)"
[2026-04-05 18:12:28] ID="centos"
[2026-04-05 18:12:28] ID_LIKE="rhel fedora"
[2026-04-05 18:12:28] VERSION_ID="7"
[2026-04-05 18:12:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-05 18:12:28] ANSI_COLOR="0;31"
[2026-04-05 18:12:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-05 18:12:28] HOME_URL="https://www.centos.org/"
[2026-04-05 18:12:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-05 18:12:28] 
[2026-04-05 18:12:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-05 18:12:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-05 18:12:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-05 18:12:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-05 18:12:28] 
[2026-04-05 18:12:28] 2026-04-05 18:11:28,622 | INFO     | **************************************
[2026-04-05 18:12:28] 2026-04-05 18:11:28,692 | INFO     | using path: /opt/boinc/instance_homes/boinc_31428/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 18:12:28] 2026-04-05 18:11:28,693 | INFO     | using path: /opt/boinc/instance_homes/boinc_31428/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 18:12:28] 2026-04-05 18:11:28,693 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-05 18:12:28] 2026-04-05 18:11:28,693 | WARNING  | maxPSS not found in memory monitor output
[2026-04-05 18:12:28] 2026-04-05 18:11:28,694 | INFO     | skipping file size check of payload stdout file (/opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/payload.stdout) since it has not been created
[2026-04-05 18:12:28] 2026-04-05 18:11:28,696 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31428/slots/0
[2026-04-05 18:12:28] 2026-04-05 18:11:28,742 | INFO     | sufficient remaining disk space (411808301056 B)
[2026-04-05 18:12:28] 2026-04-05 18:11:28,742 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-05 18:12:28] 2026-04-05 18:11:28,742 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7072724611/HITS.49263200._011600.pool.root.1 since it does n
[2026-04-05 18:12:28] 2026-04-05 18:11:29,125 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31428/slots/0
[2026-04-05 18:12:28] 2026-04-05 18:11:29,170 | INFO     | sufficient remaining disk space (411808301056 B)
[2026-04-05 18:12:28] 2026-04-05 18:11:29,172 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-05 18:12:28] 2026-04-05 18:11:29,172 | INFO     | current server update state: UPDATING_FINAL
[2026-04-05 18:12:28] 2026-04-05 18:11:29,172 | INFO     | update_server=False
[2026-04-05 18:12:28] 2026-04-05 18:11:29,172 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-05 18:12:28] 2026-04-05 18:11:29,694 | INFO     | number of running child processes to parent process 3709120: 1
[2026-04-05 18:12:28] 2026-04-05 18:11:29,695 | INFO     | maximum number of monitored processes: 6
[2026-04-05 18:12:28] 2026-04-05 18:11:29,695 | INFO     | aborting job monitoring since job object (job id=7072724611) has expired
[2026-04-05 18:12:28] 2026-04-05 18:11:29,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-05 18:12:28] 2026-04-05 18:11:29,695 | INFO     | will abort loop
[2026-04-05 18:12:28] 2026-04-05 18:11:29,715 | INFO     | all data control threads have been joined
[2026-04-05 18:12:28] 2026-04-05 18:11:30,177 | INFO     | [job] retrieve thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:30,364 | INFO     | all payload control threads have been joined
[2026-04-05 18:12:28] 2026-04-05 18:11:30,470 | INFO     | [payload] validate_pre thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:30,504 | INFO     | [payload] execute_payloads thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:30,523 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-05 18:12:28] 2026-04-05 18:11:30,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-05 18:12:28] 2026-04-05 18:11:30,619 | INFO     | [payload] failed_post thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:30,702 | INFO     | [job] job monitor thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:30,722 | INFO     | [data] control thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:30,754 | INFO     | all job control threads have been joined
[2026-04-05 18:12:28] 2026-04-05 18:11:31,034 | INFO     | [data] copytool_in thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,188 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-05 18:12:28] 2026-04-05 18:11:31,298 | INFO     | [job] validate thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,364 | INFO     | [payload] validate_post thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,369 | INFO     | [payload] control thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,564 | INFO     | [job] create_data_payload thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,581 | INFO     | [job] queue monitor thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:31,759 | INFO     | [job] control thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:32,528 | INFO     | [data] copytool_out thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:35,306 | INFO     | [data] queue_monitor thread has finished
[2026-04-05 18:12:28] 2026-04-05 18:11:59,032 | INFO     | PID=3704139 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-05 18:12:28] 2026-04-05 18:11:59,033 | INFO     | .. there are 12 such processes running
[2026-04-05 18:12:28] 2026-04-05 18:11:59,033 | INFO     | found 0 job(s) in 20 queues
[2026-04-05 18:12:28] 2026-04-05 18:11:59,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-05 18:12:28] 2026-04-05 18:11:59,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-05 18:12:28] 2026-04-05 18:12:21,877 | INFO     | [monitor] cgroup control has ended
[2026-04-05 18:12:28] 2026-04-05 18:12:22,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129549226919744)>', '<ExcThread(monitor, started 129548553283328)>']
[2026-04-05 18:12:28] 2026-04-05 18:12:23,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-05 18:12:28] 2026-04-05 18:12:23,161 | INFO     | [monitor] control thread has ended
[2026-04-05 18:12:28] 2026-04-05 18:12:27,556 | INFO     | all workflow threads have been joined
[2026-04-05 18:12:28] 2026-04-05 18:12:27,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-05 18:12:28] 2026-04-05 18:12:27,557 | INFO     | traces error code: 0
[2026-04-05 18:12:28] 2026-04-05 18:12:27,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-05 18:12:28] 2026-04-05 18:12:27,827 [wrapper] ==== pilot stdout END ====
[2026-04-05 18:12:28] 2026-04-05 18:12:27,839 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-05 18:12:28] 2026-04-05 18:12:27,850 [wrapper] pilotpid: 3704139
[2026-04-05 18:12:28] 2026-04-05 18:12:27,858 [wrapper] Pilot exit status: 0
[2026-04-05 18:12:28] 2026-04-05 18:12:27,885 [wrapper] pandaids: 7072724611
[2026-04-05 18:12:28] 2026-04-05 18:12:28,021 [wrapper] cleanup supervisor_pilot 3859045 3704140
[2026-04-05 18:12:28] ./runpilot2-wrapper.sh: line 616: 3859045 Terminated              sleep 900
[2026-04-05 18:12:28] 2026-04-05 18:12:28,030 [wrapper] Test setup, not cleaning
[2026-04-05 18:12:28] 2026-04-05 18:12:28,036 [wrapper] apfmon messages muted
[2026-04-05 18:12:28] 2026-04-05 18:12:28,043 [wrapper] ==== wrapper stdout END ====
[2026-04-05 18:12:28] 2026-04-05 18:12:28,049 [wrapper] ==== wrapper stderr END ====
[2026-04-05 18:12:28]  *** Error codes and diagnostics ***
[2026-04-05 18:12:28]     "exeErrorCode": 0,
[2026-04-05 18:12:28]     "pilotErrorCode": 0,
[2026-04-05 18:12:28]  *** Listing of results directory ***
[2026-04-05 18:12:28] total 417356
[2026-04-05 18:12:28] -rw-r--r-- 1 boinc boinc    644034 Mar 31 02:18 pilot3.tar.gz
[2026-04-05 18:12:28] -rwx------ 1 boinc boinc     36322 Mar 31 02:21 runpilot2-wrapper.sh
[2026-04-05 18:12:28] -rw-r--r-- 1 boinc boinc      5118 Mar 31 02:23 queuedata.json
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc       100 Apr  5 16:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-05 18:12:28] -rwxr-xr-x 1 boinc boinc      7986 Apr  5 16:55 run_atlas
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc       105 Apr  5 16:55 job.xml
[2026-04-05 18:12:28] -rw-r--r-- 2 boinc boinc 223272195 Apr  5 16:55 EVNT.49263198._000464.pool.root.1
[2026-04-05 18:12:28] -rw-r--r-- 2 boinc boinc     15845 Apr  5 16:55 start_atlas.sh
[2026-04-05 18:12:28] drwxrwx--x 2 boinc boinc      4096 Apr  5 16:55 shared
[2026-04-05 18:12:28] -rw-r--r-- 2 boinc boinc    656763 Apr  5 16:55 input.tar.gz
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc         0 Apr  5 16:55 boinc_setup_complete
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc      6555 Apr  5 16:55 init_data.xml
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc         0 Apr  5 16:55 boinc_lockfile
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc      2575 Apr  5 16:55 pandaJob.out
[2026-04-05 18:12:28] -rw------- 1 boinc boinc   1005088 Apr  5 16:55 agis_schedconf.cvmfs.json
[2026-04-05 18:12:28] -rw------- 1 boinc boinc   1511579 Apr  5 16:56 agis_ddmendpoints.agis.ALL.json
[2026-04-05 18:12:28] -rw------- 1 boinc boinc       420 Apr  5 16:56 workernode_map.json
[2026-04-05 18:12:28] drwx------ 5 boinc boinc      4096 Apr  5 16:56 pilot3
[2026-04-05 18:12:28] -rw------- 1 boinc boinc 198368128 Apr  5 18:10 HITS.49263200._011600.pool.root.1
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc       529 Apr  5 18:10 boinc_task_state.xml
[2026-04-05 18:12:28] -rw------- 1 boinc boinc        95 Apr  5 18:11 pilot_heartbeat.json
[2026-04-05 18:12:28] -rw------- 1 boinc boinc      1021 Apr  5 18:11 memory_monitor_summary.json
[2026-04-05 18:12:28] -rw------- 1 boinc boinc    380018 Apr  5 18:11 log.49263200._011600.job.log.tgz.1
[2026-04-05 18:12:28] -rw------- 1 boinc boinc      6296 Apr  5 18:11 heartbeat_new.json
[2026-04-05 18:12:28] -rw------- 1 boinc boinc      6187 Apr  5 18:11 heartbeat.json
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc        27 Apr  5 18:12 wrapper_checkpoint.txt
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc      8192 Apr  5 18:12 boinc_mmap_file
[2026-04-05 18:12:28] -rw------- 1 boinc boinc      6330 Apr  5 18:12 pilotlog.txt
[2026-04-05 18:12:28] -rw------- 1 boinc boinc    452558 Apr  5 18:12 log.49263200._011600.job.log.1
[2026-04-05 18:12:28] -rw------- 1 boinc boinc       357 Apr  5 18:12 output.list
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc       620 Apr  5 18:12 runtime_log
[2026-04-05 18:12:28] -rw------- 1 boinc boinc    849920 Apr  5 18:12 result.tar.gz
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc      9166 Apr  5 18:12 runtime_log.err
[2026-04-05 18:12:28] -rw------- 1 boinc boinc       652 Apr  5 18:12 fcpMDmOudR9n9Rq4apOajLDm4fhM0noT9bVoINGKDmEjRKDmtnA3Fo.diag
[2026-04-05 18:12:28] -rw-rw-r-- 1 boinc boinc     21984 Apr  5 18:12 stderr.txt
[2026-04-05 18:12:28] HITS file was successfully produced:
[2026-04-05 18:12:28] -rw------- 1 boinc boinc 198368128 Apr  5 18:10 shared/HITS.pool.root.1
[2026-04-05 18:12:28]  *** Contents of shared directory: ***
[2026-04-05 18:12:28] total 413260
[2026-04-05 18:12:28] -rw-r--r-- 2 boinc boinc 223272195 Apr  5 16:55 ATLAS.root_0
[2026-04-05 18:12:28] -rw-r--r-- 2 boinc boinc     15845 Apr  5 16:55 start_atlas.sh
[2026-04-05 18:12:28] -rw-r--r-- 2 boinc boinc    656763 Apr  5 16:55 input.tar.gz
[2026-04-05 18:12:28] -rw------- 1 boinc boinc 198368128 Apr  5 18:10 HITS.pool.root.1
[2026-04-05 18:12:28] -rw------- 1 boinc boinc    849920 Apr  5 18:12 result.tar.gz
18:12:30 (3699614): run_atlas exited; CPU time 44750.758625
18:12:30 (3699614): called boinc_finish(0)

</stderr_txt>
]]>

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