Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:12:45 (187417): wrapper (7.7.26015): starting
08:12:45 (187417): wrapper: running run_atlas (--nthreads 4)
[2026-03-31 08:12:45] Arguments: --nthreads 4
[2026-03-31 08:12:45] Threads: 4
[2026-03-31 08:12:45] Checking for CVMFS
[2026-03-31 08:12:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 08:12:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 08:12:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 08:12:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 08:12:46] 2.9.2.0 6139 986 85336 157910 3 186 18658837 36864000 0 130560 0 700315 99.977 40875 5917 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 08:12:46] CVMFS is ok
[2026-03-31 08:12:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 08:12:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 08:12:46] Further information can be found at the LHC@home message board.
[2026-03-31 08:12:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 08:12:46] Checking for apptainer binary...
[2026-03-31 08:12:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 08:12:46] Running /usr/bin/apptainer --version
[2026-03-31 08:12:46] apptainer version 1.4.1-1.1
[2026-03-31 08:12:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 08:12:46] thA373a
[2026-03-31 08:12:46] apptainer works
[2026-03-31 08:12:46] Set ATHENA_PROC_NUMBER=4
[2026-03-31 08:12:46] Set ATHENA_CORE_NUMBER=4
[2026-03-31 08:12:46] Starting ATLAS job with PandaID=7072668938
[2026-03-31 08:12:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 09:28:08]  *** The last 200 lines of the pilot log: ***
[2026-03-31 09:28:08] 2026-03-31 07:27:29,947 | INFO     | number of running child processes to parent process 195743: 1
[2026-03-31 09:28:08] 2026-03-31 07:27:29,947 | INFO     | maximum number of monitored processes: 6
[2026-03-31 09:28:08] 2026-03-31 07:27:29,947 | INFO     | aborting job monitoring since job object (job id=7072668938) has expired
[2026-03-31 09:28:08] 2026-03-31 07:27:30,832 | INFO     | --- collectZombieJob: --- 10, [195743]
[2026-03-31 09:28:08] 2026-03-31 07:27:30,832 | INFO     | zombie collector waiting for pid 195743
[2026-03-31 09:28:08] 2026-03-31 07:27:30,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 09:28:08] 2026-03-31 07:27:30,832 | INFO     | collected zombie processes
[2026-03-31 09:28:08] 2026-03-31 07:27:30,832 | INFO     | will attempt to kill all subprocesses of pid=195743
[2026-03-31 09:28:08] 2026-03-31 07:27:30,883 | INFO     | process IDs to be killed: [195743] (in reverse order)
[2026-03-31 09:28:08] 2026-03-31 07:27:30,920 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 09:28:08] 2026-03-31 07:27:30,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 09:28:08] 2026-03-31 07:27:30,922 | INFO     | did not find any defunct processes belonging to 195743
[2026-03-31 09:28:08] 2026-03-31 07:27:30,924 | INFO     | did not find any defunct processes belonging to 195743
[2026-03-31 09:28:08] 2026-03-31 07:27:30,924 | INFO     | Ready for new job
[2026-03-31 09:28:08] 2026-03-31 07:27:30,924 | INFO     | **************************************
[2026-03-31 09:28:08] 2026-03-31 07:27:30,924 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 09:28:08] 2026-03-31 07:27:30,924 | INFO     | **************************************
[2026-03-31 09:28:08] 2026-03-31 07:27:30,924 | INFO     | 
[2026-03-31 09:28:08] 2026-03-31 07:27:30,925 | INFO     | architecture information:
[2026-03-31 09:28:08] 2026-03-31 07:27:30,925 | INFO     | executing command: cat /etc/os-release
[2026-03-31 09:28:08] 2026-03-31 07:27:30,940 | INFO     | cat /etc/os-release:
[2026-03-31 09:28:08] NAME="CentOS Linux"
[2026-03-31 09:28:08] VERSION="7 (Core)"
[2026-03-31 09:28:08] ID="centos"
[2026-03-31 09:28:08] ID_LIKE="rhel fedora"
[2026-03-31 09:28:08] VERSION_ID="7"
[2026-03-31 09:28:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 09:28:08] ANSI_COLOR="0;31"
[2026-03-31 09:28:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 09:28:08] HOME_URL="https://www.centos.org/"
[2026-03-31 09:28:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 09:28:08] 
[2026-03-31 09:28:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 09:28:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 09:28:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 09:28:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 09:28:08] 
[2026-03-31 09:28:08] 2026-03-31 07:27:30,940 | INFO     | **************************************
[2026-03-31 09:28:08] 2026-03-31 07:27:31,443 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 09:28:08] 2026-03-31 07:27:31,460 | INFO     | sufficient remaining disk space (342664151040 B)
[2026-03-31 09:28:08] 2026-03-31 07:27:31,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 09:28:08] 2026-03-31 07:27:31,461 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 09:28:08] 2026-03-31 07:27:31,461 | INFO     | update_server=False
[2026-03-31 09:28:08] 2026-03-31 07:27:31,461 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 09:28:08] 2026-03-31 07:27:31,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 09:28:08] 2026-03-31 07:27:31,461 | INFO     | aborting loop
[2026-03-31 09:28:08] 2026-03-31 07:27:31,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 09:28:08] 2026-03-31 07:27:31,668 | INFO     | all data control threads have been joined
[2026-03-31 09:28:08] 2026-03-31 07:27:31,691 | INFO     | all job control threads have been joined
[2026-03-31 09:28:08] 2026-03-31 07:27:32,038 | INFO     | job.realtimelogging is not enabled
[2026-03-31 09:28:08] 2026-03-31 07:27:32,257 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 09:28:08] 2026-03-31 07:27:32,466 | INFO     | [job] retrieve thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:32,467 | INFO     | [job] job monitor thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:32,467 | INFO     | [job] queue monitor thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:32,674 | INFO     | [data] control thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:32,696 | INFO     | [job] control thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:32,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 09:28:08] 2026-03-31 07:27:32,889 | INFO     | all payload control threads have been joined
[2026-03-31 09:28:08] 2026-03-31 07:27:33,044 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,334 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,496 | INFO     | [job] validate thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,605 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,605 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,746 | INFO     | [data] copytool_in thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,775 | INFO     | [payload] validate_post thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:33,893 | INFO     | [payload] control thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:34,063 | INFO     | [payload] failed_post thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:34,264 | INFO     | [data] copytool_out thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:36,800 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 09:28:08] 2026-03-31 07:27:52,715 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-03-31 09:28:08] 2026-03-31 07:28:01,949 | INFO     | PID=191219 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-31 09:28:08] 2026-03-31 07:28:01,949 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 09:28:08] 2026-03-31 07:28:01,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 09:28:08] 2026-03-31 07:28:01,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 09:28:08] 2026-03-31 07:28:02,103 | INFO     | [monitor] cgroup control has ended
[2026-03-31 09:28:08] 2026-03-31 07:28:03,340 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140104700434240)>', '<ExcThread(monitor, started 140103779350272)>']
[2026-03-31 09:28:08] 2026-03-31 07:28:03,959 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 09:28:08] 2026-03-31 07:28:03,960 | INFO     | [monitor] control thread has ended
[2026-03-31 09:28:08] 2026-03-31 07:28:08,366 | INFO     | all workflow threads have been joined
[2026-03-31 09:28:08] 2026-03-31 07:28:08,366 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 09:28:08] 2026-03-31 07:28:08,366 | INFO     | traces error code: 0
[2026-03-31 09:28:08] 2026-03-31 07:28:08,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 09:28:08] 2026-03-31 07:28:08,447 [wrapper] ==== pilot stdout END ====
[2026-03-31 09:28:08] 2026-03-31 07:28:08,451 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 09:28:08] 2026-03-31 07:28:08,455 [wrapper] pilotpid: 191219
[2026-03-31 09:28:08] 2026-03-31 07:28:08,459 [wrapper] Pilot exit status: 0
[2026-03-31 09:28:08] 2026-03-31 07:28:08,471 [wrapper] pandaids: 7072668938
[2026-03-31 09:28:08] 2026-03-31 07:28:08,494 [wrapper] cleanup supervisor_pilot  201497 191220
[2026-03-31 09:28:08] 2026-03-31 07:28:08,498 [wrapper] Test setup, not cleaning
[2026-03-31 09:28:08] 2026-03-31 07:28:08,502 [wrapper] apfmon messages muted
[2026-03-31 09:28:08] 2026-03-31 07:28:08,506 [wrapper] ==== wrapper stdout END ====
[2026-03-31 09:28:08] 2026-03-31 07:28:08,510 [wrapper] ==== wrapper stderr END ====
[2026-03-31 09:28:08]  *** Error codes and diagnostics ***
[2026-03-31 09:28:08]     "exeErrorCode": 0,
[2026-03-31 09:28:08]     "pilotErrorCode": 0,
[2026-03-31 09:28:08]  *** Listing of results directory ***
[2026-03-31 09:28:08] total 411644
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc    644034 Mar 31 03:06 pilot3.tar.gz
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc      5118 Mar 31 03:09 queuedata.json
[2026-03-31 09:28:08] -rwx------ 1 boinc boinc     36322 Mar 31 03:09 runpilot2-wrapper.sh
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc       100 Mar 31 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 09:28:08] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 08:12 run_atlas
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc       105 Mar 31 08:12 job.xml
[2026-03-31 09:28:08] -rw-r--r-- 2 boinc boinc 221116104 Mar 31 08:12 EVNT.49263189._000475.pool.root.1
[2026-03-31 09:28:08] -rw-r--r-- 2 boinc boinc    656751 Mar 31 08:12 input.tar.gz
[2026-03-31 09:28:08] -rw-r--r-- 2 boinc boinc     15845 Mar 31 08:12 start_atlas.sh
[2026-03-31 09:28:08] drwxrwx--x 2 boinc boinc      4096 Mar 31 08:12 shared
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc         0 Mar 31 08:12 boinc_setup_complete
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc      6377 Mar 31 08:12 init_data.xml
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc         0 Mar 31 08:12 boinc_lockfile
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc      2577 Mar 31 08:12 pandaJob.out
[2026-03-31 09:28:08] -rw------- 1 boinc boinc   1003268 Mar 31 08:12 agis_schedconf.cvmfs.json
[2026-03-31 09:28:08] -rw------- 1 boinc boinc   1511579 Mar 31 08:12 agis_ddmendpoints.agis.ALL.json
[2026-03-31 09:28:08] -rw------- 1 boinc boinc       422 Mar 31 08:12 workernode_map.json
[2026-03-31 09:28:08] drwx------ 5 boinc boinc      4096 Mar 31 08:12 pilot3
[2026-03-31 09:28:08] -rw------- 1 boinc boinc 195006340 Mar 31 09:27 HITS.49263191._011230.pool.root.1
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc       529 Mar 31 09:27 boinc_task_state.xml
[2026-03-31 09:28:08] -rw------- 1 boinc boinc        95 Mar 31 09:27 pilot_heartbeat.json
[2026-03-31 09:28:08] -rw------- 1 boinc boinc      1017 Mar 31 09:27 memory_monitor_summary.json
[2026-03-31 09:28:08] -rw------- 1 boinc boinc    231910 Mar 31 09:27 log.49263191._011230.job.log.tgz.1
[2026-03-31 09:28:08] -rw------- 1 boinc boinc      6319 Mar 31 09:27 heartbeat_new.json
[2026-03-31 09:28:08] -rw------- 1 boinc boinc      6210 Mar 31 09:27 heartbeat.json
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc      8192 Mar 31 09:28 boinc_mmap_file
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc        27 Mar 31 09:28 wrapper_checkpoint.txt
[2026-03-31 09:28:08] -rw------- 1 boinc boinc      4818 Mar 31 09:28 pilotlog.txt
[2026-03-31 09:28:08] -rw------- 1 boinc boinc    442188 Mar 31 09:28 log.49263191._011230.job.log.1
[2026-03-31 09:28:08] -rw------- 1 boinc boinc       357 Mar 31 09:28 output.list
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc       620 Mar 31 09:28 runtime_log
[2026-03-31 09:28:08] -rw------- 1 boinc boinc    696320 Mar 31 09:28 result.tar.gz
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc      8901 Mar 31 09:28 runtime_log.err
[2026-03-31 09:28:08] -rw------- 1 boinc boinc       658 Mar 31 09:28 8dHODmEncR9n9Rq4apOajLDm4fhM0noT9bVoINGKDm7YRKDm9Uxpjm.diag
[2026-03-31 09:28:08] -rw-r--r-- 1 boinc boinc     10926 Mar 31 09:28 stderr.txt
[2026-03-31 09:28:08] HITS file was successfully produced:
[2026-03-31 09:28:08] -rw------- 1 boinc boinc 195006340 Mar 31 09:27 shared/HITS.pool.root.1
[2026-03-31 09:28:08]  *** Contents of shared directory: ***
[2026-03-31 09:28:08] total 407720
[2026-03-31 09:28:08] -rw-r--r-- 2 boinc boinc 221116104 Mar 31 08:12 ATLAS.root_0
[2026-03-31 09:28:08] -rw-r--r-- 2 boinc boinc    656751 Mar 31 08:12 input.tar.gz
[2026-03-31 09:28:08] -rw-r--r-- 2 boinc boinc     15845 Mar 31 08:12 start_atlas.sh
[2026-03-31 09:28:08] -rw------- 1 boinc boinc 195006340 Mar 31 09:27 HITS.pool.root.1
[2026-03-31 09:28:08] -rw------- 1 boinc boinc    696320 Mar 31 09:28 result.tar.gz
09:28:31 (187417): run_atlas exited; CPU time 16523.862008
09:28:31 (187417): called boinc_finish(0)

</stderr_txt>
]]>

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