Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:51:19 (5751): wrapper (7.7.26015): starting
12:51:19 (5751): wrapper: running run_atlas (--nthreads 8)
[2026-03-31 12:51:19] Arguments: --nthreads 8
[2026-03-31 12:51:19] Threads: 8
[2026-03-31 12:51:19] Checking for CVMFS
[2026-03-31 12:51:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 12:51:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 12:51:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 12:51:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 12:51:22] 2.11.2.0 23754 151957 139252 157914 2 54 14390653 25165825 4688 130560 157 42239652 99.825 30815123 1025 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-31 12:51:22] CVMFS is ok
[2026-03-31 12:51:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 12:51:23] Checking for apptainer binary...
[2026-03-31 12:51:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 12:51:23] Running /usr/bin/apptainer --version
[2026-03-31 12:51:23] apptainer version 1.3.2-1.el7
[2026-03-31 12:51:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 12:51:46] cg-vwn493.simple-grid.lan
[2026-03-31 12:51:46] apptainer works
[2026-03-31 12:51:46] Set ATHENA_PROC_NUMBER=8
[2026-03-31 12:51:46] Set ATHENA_CORE_NUMBER=8
[2026-03-31 12:51:46] Starting ATLAS job with PandaID=7072604936
[2026-03-31 12:51:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 16:59:05]  *** The last 200 lines of the pilot log: ***
[2026-03-31 16:59:05] 2026-03-31 14:57:58,883 | INFO     | extracted standard memory fields from prmon json
[2026-03-31 16:59:05] 2026-03-31 14:57:58,883 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-31 16:59:05] 2026-03-31 14:57:58,883 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-31 16:59:05] 2026-03-31 14:57:58,888 | INFO     | fitting pss+swap vs Time
[2026-03-31 16:59:05] 2026-03-31 14:57:58,889 | INFO     | sum of square deviations: 3822136780.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,891 | INFO     | sum of deviations: 127546359974.00003
[2026-03-31 16:59:05] 2026-03-31 14:57:58,891 | INFO     | mean x (centered): 0.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,891 | INFO     | mean y: 2706448.0865800865
[2026-03-31 16:59:05] 2026-03-31 14:57:58,891 | INFO     | intersect: 2706448.0865800865
[2026-03-31 16:59:05] 2026-03-31 14:57:58,892 | INFO     | chi2: 6.629765814803408
[2026-03-31 16:59:05] 2026-03-31 14:57:58,892 | INFO     | sum of square deviations: 3579276412.5
[2026-03-31 16:59:05] 2026-03-31 14:57:58,894 | INFO     | sum of deviations: 141145279653.50003
[2026-03-31 16:59:05] 2026-03-31 14:57:58,894 | INFO     | mean x (centered): 0.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,894 | INFO     | mean y: 2714802.53539823
[2026-03-31 16:59:05] 2026-03-31 14:57:58,894 | INFO     | intersect: 2714802.53539823
[2026-03-31 16:59:05] 2026-03-31 14:57:58,895 | INFO     | chi2: 5.938916204147056
[2026-03-31 16:59:05] 2026-03-31 14:57:58,895 | INFO     | current chi2=5.938916204147056 (change=10.42042253006546 %)
[2026-03-31 16:59:05] 2026-03-31 14:57:58,895 | INFO     | right removable region: 225
[2026-03-31 16:59:05] 2026-03-31 14:57:58,896 | INFO     | sum of square deviations: 3579276412.5
[2026-03-31 16:59:05] 2026-03-31 14:57:58,897 | INFO     | sum of deviations: 37460281383.5
[2026-03-31 16:59:05] 2026-03-31 14:57:58,898 | INFO     | mean x (centered): 0.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,898 | INFO     | mean y: 2762981.792035398
[2026-03-31 16:59:05] 2026-03-31 14:57:58,898 | INFO     | intersect: 2762981.792035398
[2026-03-31 16:59:05] 2026-03-31 14:57:58,898 | INFO     | chi2: 1.7559451094959175
[2026-03-31 16:59:05] 2026-03-31 14:57:58,898 | INFO     | current chi2=1.7559451094959175 (change=73.51422118749474 %)
[2026-03-31 16:59:05] 2026-03-31 14:57:58,899 | INFO     | sum of square deviations: 3346927870.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,901 | INFO     | sum of deviations: -186278018.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,901 | INFO     | mean x (centered): 0.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,901 | INFO     | mean y: 2787539.330316742
[2026-03-31 16:59:05] 2026-03-31 14:57:58,901 | INFO     | intersect: 2787539.330316742
[2026-03-31 16:59:05] 2026-03-31 14:57:58,901 | INFO     | chi2: 0.7760691915071218
[2026-03-31 16:59:05] 2026-03-31 14:57:58,902 | INFO     | current chi2=0.7760691915071218 (change=55.803334209580754 %)
[2026-03-31 16:59:05] 2026-03-31 14:57:58,902 | INFO     | sum of square deviations: 3124858590.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,904 | INFO     | sum of deviations: -4794538237.499998
[2026-03-31 16:59:05] 2026-03-31 14:57:58,904 | INFO     | mean x (centered): 0.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,904 | INFO     | mean y: 2790677.3657407407
[2026-03-31 16:59:05] 2026-03-31 14:57:58,904 | INFO     | intersect: 2790677.3657407407
[2026-03-31 16:59:05] 2026-03-31 14:57:58,905 | INFO     | chi2: 0.7573375458277884
[2026-03-31 16:59:05] 2026-03-31 14:57:58,905 | INFO     | current chi2=0.7573375458277884 (change=2.4136566538553916 %)
[2026-03-31 16:59:05] 2026-03-31 14:57:58,905 | INFO     | left removable region: 15
[2026-03-31 16:59:05] 2026-03-31 14:57:58,905 | INFO     | sum of square deviations: 2871616632.5
[2026-03-31 16:59:05] 2026-03-31 14:57:58,907 | INFO     | sum of deviations: 10632612716.500002
[2026-03-31 16:59:05] 2026-03-31 14:57:58,907 | INFO     | mean x (centered): 0.0
[2026-03-31 16:59:05] 2026-03-31 14:57:58,907 | INFO     | mean y: 2801560.661904762
[2026-03-31 16:59:05] 2026-03-31 14:57:58,907 | INFO     | intersect: 2801560.661904762
[2026-03-31 16:59:05] 2026-03-31 14:57:58,908 | INFO     | chi2: 0.0018797919708818756
[2026-03-31 16:59:05] 2026-03-31 14:57:58,908 | INFO     | current memory leak: 3.70 B/s (using 210 data points, chi2=0.00)
[2026-03-31 16:59:05] 2026-03-31 14:57:58,908 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | ..............................
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . Timing measurements:
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . get job = 0 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . initial setup = 104 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . payload setup = 234 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . stage-in = 0 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . payload execution = 14172 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . stage-out = 3 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | . log creation = 1 s
[2026-03-31 16:59:05] 2026-03-31 14:57:58,909 | INFO     | ..............................
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | 
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | job summary report
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | --------------------------------------------------
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | PanDA job id: 7072604936
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | task id: 49263191
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | errors: (none)
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-31 16:59:05] 2026-03-31 14:57:59,032 | INFO     | pilot state: finished 
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | transexitcode: 0
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | exeerrorcode: 0
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | exeerrordiag: 
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | exitcode: 0
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | exitmsg: OK
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | cpuconsumptiontime: 54615 s
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | nevents: 400
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | neventsw: 0
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | pid: 14622
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | pgrp: 14622
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | corecount: 8
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | event service: False
[2026-03-31 16:59:05] 2026-03-31 14:57:59,033 | INFO     | sizes: {0: 2279135, 1: 2279820, 2: 2280193, 3: 2281677, 13: 2281677, 14411: 2312221, 14415: 2321275, 14416: 2321413}
[2026-03-31 16:59:05] 2026-03-31 14:57:59,034 | INFO     | --------------------------------------------------
[2026-03-31 16:59:05] 2026-03-31 14:57:59,034 | INFO     | 
[2026-03-31 16:59:05] 2026-03-31 14:57:59,034 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-31 16:59:05] 2026-03-31 14:57:59,325 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,325 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,325 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,325 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | job 7072604936 has completed (purged errors)
[2026-03-31 16:59:05] 2026-03-31 14:57:59,327 | INFO     | overall cleanup function is called
[2026-03-31 16:59:05] 2026-03-31 14:57:59,858 | WARNING  | process 14622 can no longer be monitored (due to stat problems) - aborting
[2026-03-31 16:59:05] 2026-03-31 14:57:59,952 | INFO     | using path: /var/lib/boinc/slots/7/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 16:59:05] 2026-03-31 14:58:00,105 | INFO     | number of running child processes to parent process 14622: 1
[2026-03-31 16:59:05] 2026-03-31 14:58:00,105 | INFO     | maximum number of monitored processes: 10
[2026-03-31 16:59:05] 2026-03-31 14:58:00,105 | INFO     | aborting job monitoring since job object (job id=7072604936) has expired
[2026-03-31 16:59:05] 2026-03-31 14:58:00,337 | INFO     | --- collectZombieJob: --- 10, [14622]
[2026-03-31 16:59:05] 2026-03-31 14:58:00,337 | INFO     | zombie collector waiting for pid 14622
[2026-03-31 16:59:05] 2026-03-31 14:58:00,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 16:59:05] 2026-03-31 14:58:00,337 | INFO     | collected zombie processes
[2026-03-31 16:59:05] 2026-03-31 14:58:00,337 | INFO     | will attempt to kill all subprocesses of pid=14622
[2026-03-31 16:59:05] 2026-03-31 14:58:00,444 | INFO     | process IDs to be killed: [14622] (in reverse order)
[2026-03-31 16:59:05] 2026-03-31 14:58:01,422 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 16:59:05] 2026-03-31 14:58:01,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 16:59:05] 2026-03-31 14:58:01,426 | INFO     | did not find any defunct processes belonging to 14622
[2026-03-31 16:59:05] 2026-03-31 14:58:01,429 | INFO     | did not find any defunct processes belonging to 14622
[2026-03-31 16:59:05] 2026-03-31 14:58:01,430 | INFO     | Ready for new job
[2026-03-31 16:59:05] 2026-03-31 14:58:01,431 | INFO     | **************************************
[2026-03-31 16:59:05] 2026-03-31 14:58:01,432 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 16:59:05] 2026-03-31 14:58:01,432 | INFO     | **************************************
[2026-03-31 16:59:05] 2026-03-31 14:58:01,432 | INFO     | 
[2026-03-31 16:59:05] 2026-03-31 14:58:01,432 | INFO     | pilot is running in a VM
[2026-03-31 16:59:05] 2026-03-31 14:58:01,433 | INFO     | architecture information:
[2026-03-31 16:59:05] 2026-03-31 14:58:01,434 | INFO     | executing command: cat /etc/os-release
[2026-03-31 16:59:05] 2026-03-31 14:58:01,648 | INFO     | cat /etc/os-release:
[2026-03-31 16:59:05] NAME="CentOS Linux"
[2026-03-31 16:59:05] VERSION="7 (Core)"
[2026-03-31 16:59:05] ID="centos"
[2026-03-31 16:59:05] ID_LIKE="rhel fedora"
[2026-03-31 16:59:05] VERSION_ID="7"
[2026-03-31 16:59:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 16:59:05] ANSI_COLOR="0;31"
[2026-03-31 16:59:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 16:59:05] HOME_URL="https://www.centos.org/"
[2026-03-31 16:59:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 16:59:05] 
[2026-03-31 16:59:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 16:59:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 16:59:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 16:59:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 16:59:05] 
[2026-03-31 16:59:05] 2026-03-31 14:58:01,648 | INFO     | **************************************
[2026-03-31 16:59:05] 2026-03-31 14:58:02,151 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-31 16:59:05] 2026-03-31 14:58:02,222 | INFO     | sufficient remaining disk space (497362665472 B)
[2026-03-31 16:59:05] 2026-03-31 14:58:02,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 16:59:05] 2026-03-31 14:58:02,223 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 16:59:05] 2026-03-31 14:58:02,223 | INFO     | update_server=False
[2026-03-31 16:59:05] 2026-03-31 14:58:02,223 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 16:59:05] 2026-03-31 14:58:02,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 16:59:05] 2026-03-31 14:58:02,395 | INFO     | all data control threads have been joined
[2026-03-31 16:59:05] 2026-03-31 14:58:02,529 | INFO     | all payload control threads have been joined
[2026-03-31 16:59:05] 2026-03-31 14:58:02,610 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-31 16:59:05] 2026-03-31 14:58:02,610 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-31 16:59:05] 2026-03-31 14:58:02,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 16:59:05] 2026-03-31 14:58:02,610 | INFO     | will abort loop
[2026-03-31 16:59:05] 2026-03-31 14:58:03,229 | INFO     | [job] retrieve thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,401 | INFO     | [data] control thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,440 | INFO     | all job control threads have been joined
[2026-03-31 16:59:05] 2026-03-31 14:58:03,479 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,480 | INFO     | [data] copytool_in thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,535 | INFO     | [payload] control thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,544 | INFO     | [payload] failed_post thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,616 | INFO     | [job] job monitor thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,801 | INFO     | [job] validate thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,876 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:03,935 | INFO     | [payload] validate_post thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:04,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 16:59:05] 2026-03-31 14:58:04,230 | INFO     | [data] copytool_out thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:04,280 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:04,446 | INFO     | [job] control thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:04,666 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:04,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 16:59:05] 2026-03-31 14:58:05,060 | INFO     | [job] queue monitor thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:08,896 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 16:59:05] 2026-03-31 14:58:31,525 | INFO     | PID=10020 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-31 16:59:05] 2026-03-31 14:58:31,525 | INFO     | .. there are 9 such processes running
[2026-03-31 16:59:05] 2026-03-31 14:58:31,529 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 16:59:05] 2026-03-31 14:58:31,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 16:59:05] 2026-03-31 14:58:31,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 16:59:05] 2026-03-31 14:58:54,438 | INFO     | [monitor] cgroup control has ended
[2026-03-31 16:59:05] 2026-03-31 14:58:55,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258661750592)>', '<ExcThread(monitor, started 140257911625472)>']
[2026-03-31 16:59:05] 2026-03-31 14:58:55,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 16:59:05] 2026-03-31 14:58:55,674 | INFO     | [monitor] control thread has ended
[2026-03-31 16:59:05] 2026-03-31 14:59:00,328 | INFO     | all workflow threads have been joined
[2026-03-31 16:59:05] 2026-03-31 14:59:00,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 16:59:05] 2026-03-31 14:59:00,328 | INFO     | traces error code: 0
[2026-03-31 16:59:05] 2026-03-31 14:59:00,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 16:59:05] 2026-03-31 14:59:00,596 [wrapper] ==== pilot stdout END ====
[2026-03-31 16:59:05] 2026-03-31 14:59:00,696 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 16:59:05] 2026-03-31 14:59:00,806 [wrapper] pilotpid: 10020
[2026-03-31 16:59:05] 2026-03-31 14:59:00,868 [wrapper] Pilot exit status: 0
[2026-03-31 16:59:05] 2026-03-31 14:59:01,322 [wrapper] pandaids: 7072604936
[2026-03-31 16:59:05] 2026-03-31 14:59:02,380 [wrapper] cleanup supervisor_pilot 22857 10021
[2026-03-31 16:59:05] 2026-03-31 14:59:02,485 [wrapper] Test setup, not cleaning
[2026-03-31 16:59:05] 2026-03-31 14:59:02,568 [wrapper] apfmon messages muted
[2026-03-31 16:59:05] 2026-03-31 14:59:02,661 [wrapper] ==== wrapper stdout END ====
[2026-03-31 16:59:05] 2026-03-31 14:59:02,763 [wrapper] ==== wrapper stderr END ====
[2026-03-31 16:59:05]  *** Error codes and diagnostics ***
[2026-03-31 16:59:05]     "exeErrorCode": 0,
[2026-03-31 16:59:05]     "pilotErrorCode": 0,
[2026-03-31 16:59:05]  *** Listing of results directory ***
[2026-03-31 16:59:05] total 418100
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc    644034 Mar 31 01:47 pilot3.tar.gz
[2026-03-31 16:59:05] -rwx------. 1 boinc boinc     36322 Mar 31 01:51 runpilot2-wrapper.sh
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc      5118 Mar 31 01:53 queuedata.json
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc       100 Mar 31 12:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 16:59:05] -rwxr-xr-x. 1 boinc boinc      7986 Mar 31 12:51 run_atlas
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc       105 Mar 31 12:51 job.xml
[2026-03-31 16:59:05] -rw-r--r--. 2 boinc boinc 223258508 Mar 31 12:51 EVNT.49263189._000453.pool.root.1
[2026-03-31 16:59:05] -rw-r--r--. 2 boinc boinc     15845 Mar 31 12:51 start_atlas.sh
[2026-03-31 16:59:05] drwxrwx--x. 2 boinc boinc        68 Mar 31 12:51 shared
[2026-03-31 16:59:05] -rw-r--r--. 2 boinc boinc    656754 Mar 31 12:51 input.tar.gz
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc      6390 Mar 31 12:51 init_data.xml
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc         0 Mar 31 12:51 boinc_lockfile
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc      2577 Mar 31 12:51 pandaJob.out
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc       415 Mar 31 12:57 workernode_map.json
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc   1003225 Mar 31 12:57 agis_schedconf.cvmfs.json
[2026-03-31 16:59:05] drwx------. 5 boinc boinc      4096 Mar 31 12:57 pilot3
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc 197378622 Mar 31 16:56 HITS.49263191._010695.pool.root.1
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc       531 Mar 31 16:56 boinc_task_state.xml
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc      1008 Mar 31 16:57 memory_monitor_summary.json
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc   1511579 Mar 31 16:57 agis_ddmendpoints.agis.ALL.json
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc    401086 Mar 31 16:57 log.49263191._010695.job.log.tgz.1
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc      6332 Mar 31 16:57 heartbeat_new.json
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc      6223 Mar 31 16:57 heartbeat.json
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc        95 Mar 31 16:58 pilot_heartbeat.json
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc      8192 Mar 31 16:58 boinc_mmap_file
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc        28 Mar 31 16:58 wrapper_checkpoint.txt
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc      5065 Mar 31 16:59 pilotlog.txt
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc   1325656 Mar 31 16:59 log.49263191._010695.job.log.1
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc       357 Mar 31 16:59 output.list
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc       620 Mar 31 16:59 runtime_log
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc   1740800 Mar 31 16:59 result.tar.gz
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc      8816 Mar 31 16:59 runtime_log.err
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc       655 Mar 31 16:59 FUpNDmfZbR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmNQPKDmY0OiNn.diag
[2026-03-31 16:59:05] -rw-r--r--. 1 boinc boinc     20672 Mar 31 16:59 stderr.txt
[2026-03-31 16:59:05] HITS file was successfully produced:
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc 197378622 Mar 31 16:56 shared/HITS.pool.root.1
[2026-03-31 16:59:05]  *** Contents of shared directory: ***
[2026-03-31 16:59:05] total 413144
[2026-03-31 16:59:05] -rw-r--r--. 2 boinc boinc 223258508 Mar 31 12:51 ATLAS.root_0
[2026-03-31 16:59:05] -rw-r--r--. 2 boinc boinc     15845 Mar 31 12:51 start_atlas.sh
[2026-03-31 16:59:05] -rw-r--r--. 2 boinc boinc    656754 Mar 31 12:51 input.tar.gz
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc 197378622 Mar 31 16:56 HITS.pool.root.1
[2026-03-31 16:59:05] -rw-------. 1 boinc boinc   1740800 Mar 31 16:59 result.tar.gz
16:59:07 (5751): run_atlas exited; CPU time 54813.330724
16:59:07 (5751): called boinc_finish(0)

</stderr_txt>
]]>

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