Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:30:09 (1972124): wrapper (7.7.26015): starting
14:30:09 (1972124): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 14:30:09] Arguments: --nthreads 2
[2026-03-31 14:30:09] Threads: 2
[2026-03-31 14:30:09] Checking for CVMFS
[2026-03-31 14:30:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 14:30:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 14:30:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 14:30:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 14:30:10] 2.9.2.0 1552346 4570 55512 157914 0 188 30464565 36864001 0 130560 0 1608037 99.980 168832 15129 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 14:30:10] CVMFS is ok
[2026-03-31 14:30:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 14:30:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 14:30:10] Further information can be found at the LHC@home message board.
[2026-03-31 14:30:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 14:30:10] Checking for apptainer binary...
[2026-03-31 14:30:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 14:30:10] Running /usr/bin/apptainer --version
[2026-03-31 14:30:10] apptainer version 1.4.1-1.1
[2026-03-31 14:30:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 14:30:10] thA337
[2026-03-31 14:30:10] apptainer works
[2026-03-31 14:30:10] Set ATHENA_PROC_NUMBER=2
[2026-03-31 14:30:10] Set ATHENA_CORE_NUMBER=2
[2026-03-31 14:30:10] Starting ATLAS job with PandaID=7072603963
[2026-03-31 14:30:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 16:32:09]  *** The last 200 lines of the pilot log: ***
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,820 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 16:32:09] 2026-03-31 14:31:37,821 | INFO     | job 7072603963 has completed (purged errors)
[2026-03-31 16:32:09] 2026-03-31 14:31:37,821 | INFO     | overall cleanup function is called
[2026-03-31 16:32:09] 2026-03-31 14:31:38,822 | INFO     | --- collectZombieJob: --- 10, [1980566]
[2026-03-31 16:32:09] 2026-03-31 14:31:38,822 | INFO     | zombie collector waiting for pid 1980566
[2026-03-31 16:32:09] 2026-03-31 14:31:38,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 16:32:09] 2026-03-31 14:31:38,822 | INFO     | collected zombie processes
[2026-03-31 16:32:09] 2026-03-31 14:31:38,823 | INFO     | will attempt to kill all subprocesses of pid=1980566
[2026-03-31 16:32:09] 2026-03-31 14:31:38,892 | INFO     | process IDs to be killed: [1980566] (in reverse order)
[2026-03-31 16:32:09] 2026-03-31 14:31:38,912 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 16:32:09] 2026-03-31 14:31:38,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 16:32:09] 2026-03-31 14:31:38,913 | INFO     | did not find any defunct processes belonging to 1980566
[2026-03-31 16:32:09] 2026-03-31 14:31:38,914 | INFO     | did not find any defunct processes belonging to 1980566
[2026-03-31 16:32:09] 2026-03-31 14:31:38,914 | INFO     | Ready for new job
[2026-03-31 16:32:09] 2026-03-31 14:31:38,914 | INFO     | **************************************
[2026-03-31 16:32:09] 2026-03-31 14:31:38,914 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 16:32:09] 2026-03-31 14:31:38,914 | INFO     | **************************************
[2026-03-31 16:32:09] 2026-03-31 14:31:38,914 | INFO     | 
[2026-03-31 16:32:09] 2026-03-31 14:31:38,915 | INFO     | architecture information:
[2026-03-31 16:32:09] 2026-03-31 14:31:38,915 | INFO     | executing command: cat /etc/os-release
[2026-03-31 16:32:09] 2026-03-31 14:31:38,923 | INFO     | cat /etc/os-release:
[2026-03-31 16:32:09] NAME="CentOS Linux"
[2026-03-31 16:32:09] VERSION="7 (Core)"
[2026-03-31 16:32:09] ID="centos"
[2026-03-31 16:32:09] ID_LIKE="rhel fedora"
[2026-03-31 16:32:09] VERSION_ID="7"
[2026-03-31 16:32:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 16:32:09] ANSI_COLOR="0;31"
[2026-03-31 16:32:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 16:32:09] HOME_URL="https://www.centos.org/"
[2026-03-31 16:32:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 16:32:09] 
[2026-03-31 16:32:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 16:32:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 16:32:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 16:32:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 16:32:09] 
[2026-03-31 16:32:09] 2026-03-31 14:31:38,923 | INFO     | **************************************
[2026-03-31 16:32:09] 2026-03-31 14:31:39,427 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | INFO     | sufficient remaining disk space (481008025600 B)
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | INFO     | update_server=False
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 16:32:09] 2026-03-31 14:31:39,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 16:32:09] 2026-03-31 14:31:39,709 | INFO     | all payload control threads have been joined
[2026-03-31 16:32:09] 2026-03-31 14:31:39,988 | INFO     | [monitor] cgroup control has ended
[2026-03-31 16:32:09] 2026-03-31 14:31:40,129 | INFO     | all job control threads have been joined
[2026-03-31 16:32:09] 2026-03-31 14:31:40,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 16:32:09] 2026-03-31 14:31:40,196 | INFO     | aborting loop
[2026-03-31 16:32:09] 2026-03-31 14:31:40,352 | INFO     | all data control threads have been joined
[2026-03-31 16:32:09] 2026-03-31 14:31:40,441 | INFO     | [job] retrieve thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:40,444 | INFO     | [job] queue monitor thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:40,588 | INFO     | [data] copytool_in thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:40,590 | INFO     | [payload] failed_post thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:40,715 | INFO     | [payload] control thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,061 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,135 | INFO     | [job] control thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 16:32:09] 2026-03-31 14:31:41,202 | INFO     | [job] job monitor thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,358 | INFO     | [data] control thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,445 | INFO     | [data] copytool_out thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,589 | INFO     | [payload] validate_post thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,746 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,756 | INFO     | [job] validate thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:41,789 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:45,185 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:50,099 | INFO     | job.realtimelogging is not enabled
[2026-03-31 16:32:09] 2026-03-31 14:31:51,105 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 16:32:09] 2026-03-31 14:31:51,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455677536064)>', '<ExcThread(monitor, started 140454792247040)>']
[2026-03-31 16:32:09] 2026-03-31 14:31:56,299 | INFO     | all workflow threads have been joined
[2026-03-31 16:32:09] 2026-03-31 14:31:56,300 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 16:32:09] 2026-03-31 14:31:56,301 | INFO     | traces error code: 0
[2026-03-31 16:32:09] 2026-03-31 14:31:56,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 16:32:09] 2026-03-31 14:32:09,421 | INFO     | PID=1976153 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 16:32:09] 2026-03-31 14:32:09,421 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 16:32:09] 2026-03-31 14:32:09,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 16:32:09] 2026-03-31 14:32:09,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 16:32:09] 2026-03-31 14:32:09,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 16:32:09] 2026-03-31 14:32:09,421 | INFO     | [monitor] control thread has ended
[2026-03-31 16:32:09] 2026-03-31 14:32:09,459 [wrapper] ==== pilot stdout END ====
[2026-03-31 16:32:09] 2026-03-31 14:32:09,461 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 16:32:09] 2026-03-31 14:32:09,464 [wrapper] pilotpid: 1976153
[2026-03-31 16:32:09] 2026-03-31 14:32:09,466 [wrapper] Pilot exit status: 0
[2026-03-31 16:32:09] 2026-03-31 14:32:09,473 [wrapper] pandaids: 7072603963
[2026-03-31 16:32:09] 2026-03-31 14:32:09,485 [wrapper] cleanup supervisor_pilot 1986135 1976154
[2026-03-31 16:32:09] 2026-03-31 14:32:09,487 [wrapper] Test setup, not cleaning
[2026-03-31 16:32:09] 2026-03-31 14:32:09,489 [wrapper] apfmon messages muted
[2026-03-31 16:32:09] 2026-03-31 14:32:09,492 [wrapper] ==== wrapper stdout END ====
[2026-03-31 16:32:09] 2026-03-31 14:32:09,494 [wrapper] ==== wrapper stderr END ====
[2026-03-31 16:32:09]  *** Error codes and diagnostics ***
[2026-03-31 16:32:09]     "exeErrorCode": 0,
[2026-03-31 16:32:09]     "pilotErrorCode": 0,
[2026-03-31 16:32:09]  *** Listing of results directory ***
[2026-03-31 16:32:09] total 408944
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc    644034 Mar 31 01:47 pilot3.tar.gz
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc      5118 Mar 31 01:50 queuedata.json
[2026-03-31 16:32:09] -rwx------ 1 boinc boinc     36322 Mar 31 01:50 runpilot2-wrapper.sh
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc       100 Mar 31 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 16:32:09] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 14:30 run_atlas
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc       105 Mar 31 14:30 job.xml
[2026-03-31 16:32:09] -rw-r--r-- 2 boinc boinc 222565507 Mar 31 14:30 EVNT.49263189._000428.pool.root.1
[2026-03-31 16:32:09] -rw-r--r-- 2 boinc boinc    656751 Mar 31 14:30 input.tar.gz
[2026-03-31 16:32:09] -rw-r--r-- 2 boinc boinc     15845 Mar 31 14:30 start_atlas.sh
[2026-03-31 16:32:09] drwxrwx--x 2 boinc boinc      4096 Mar 31 14:30 shared
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc         0 Mar 31 14:30 boinc_setup_complete
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc      6205 Mar 31 14:30 init_data.xml
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc         0 Mar 31 14:30 boinc_lockfile
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc      2577 Mar 31 14:30 pandaJob.out
[2026-03-31 16:32:09] -rw------- 1 boinc boinc   1003225 Mar 31 14:30 agis_schedconf.cvmfs.json
[2026-03-31 16:32:09] -rw------- 1 boinc boinc   1511579 Mar 31 14:30 agis_ddmendpoints.agis.ALL.json
[2026-03-31 16:32:09] -rw------- 1 boinc boinc       425 Mar 31 14:30 workernode_map.json
[2026-03-31 16:32:09] drwx------ 5 boinc boinc      4096 Mar 31 14:30 pilot3
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc       529 Mar 31 16:31 boinc_task_state.xml
[2026-03-31 16:32:09] -rw------- 1 boinc boinc 190300216 Mar 31 16:31 HITS.49263191._010056.pool.root.1
[2026-03-31 16:32:09] -rw------- 1 boinc boinc      1013 Mar 31 16:31 memory_monitor_summary.json
[2026-03-31 16:32:09] -rw------- 1 boinc boinc    227686 Mar 31 16:31 log.49263191._010056.job.log.tgz.1
[2026-03-31 16:32:09] -rw------- 1 boinc boinc      6313 Mar 31 16:31 heartbeat_new.json
[2026-03-31 16:32:09] -rw------- 1 boinc boinc      6204 Mar 31 16:31 heartbeat.json
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc      8192 Mar 31 16:31 boinc_mmap_file
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc        27 Mar 31 16:31 wrapper_checkpoint.txt
[2026-03-31 16:32:09] -rw------- 1 boinc boinc       747 Mar 31 16:32 pilotlog.txt
[2026-03-31 16:32:09] -rw------- 1 boinc boinc        95 Mar 31 16:32 pilot_heartbeat.json
[2026-03-31 16:32:09] -rw------- 1 boinc boinc    695575 Mar 31 16:32 log.49263191._010056.job.log.1
[2026-03-31 16:32:09] -rw------- 1 boinc boinc       357 Mar 31 16:32 output.list
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc       620 Mar 31 16:32 runtime_log
[2026-03-31 16:32:09] -rw------- 1 boinc boinc    942080 Mar 31 16:32 result.tar.gz
[2026-03-31 16:32:09] -rw------- 1 boinc boinc       657 Mar 31 16:32 wGlMDmgYbR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDm5NPKDmAioODm.diag
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc      8896 Mar 31 16:32 runtime_log.err
[2026-03-31 16:32:09] -rw-r--r-- 1 boinc boinc     11495 Mar 31 16:32 stderr.txt
[2026-03-31 16:32:09] HITS file was successfully produced:
[2026-03-31 16:32:09] -rw------- 1 boinc boinc 190300216 Mar 31 16:31 shared/HITS.pool.root.1
[2026-03-31 16:32:09]  *** Contents of shared directory: ***
[2026-03-31 16:32:09] total 404780
[2026-03-31 16:32:09] -rw-r--r-- 2 boinc boinc 222565507 Mar 31 14:30 ATLAS.root_0
[2026-03-31 16:32:09] -rw-r--r-- 2 boinc boinc    656751 Mar 31 14:30 input.tar.gz
[2026-03-31 16:32:09] -rw-r--r-- 2 boinc boinc     15845 Mar 31 14:30 start_atlas.sh
[2026-03-31 16:32:09] -rw------- 1 boinc boinc 190300216 Mar 31 16:31 HITS.pool.root.1
[2026-03-31 16:32:09] -rw------- 1 boinc boinc    942080 Mar 31 16:32 result.tar.gz
16:32:11 (1972124): run_atlas exited; CPU time 13955.210922
16:32:11 (1972124): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN