Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:17:06 (3396785): wrapper (7.7.26015): starting
01:17:06 (3396785): wrapper: running run_atlas (--nthreads 12)
[2026-04-01 01:17:06] Arguments: --nthreads 12
[2026-04-01 01:17:06] Threads: 12
[2026-04-01 01:17:06] Checking for CVMFS
[2026-04-01 01:17:06] No cvmfs_config command found, will try listing directly
[2026-04-01 01:17:06] CVMFS is ok
[2026-04-01 01:17:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 01:17:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 01:17:06] Further information can be found at the LHC@home message board.
[2026-04-01 01:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 01:17:06] Checking for apptainer binary...
[2026-04-01 01:17:06] which: no apptainer in ((null))
[2026-04-01 01:17:06] apptainer is not installed, using version from CVMFS
[2026-04-01 01:17:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 01:17:06] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-04-01 01:17:06] apptainer works
[2026-04-01 01:17:06] Set ATHENA_PROC_NUMBER=12
[2026-04-01 01:17:06] Set ATHENA_CORE_NUMBER=12
[2026-04-01 01:17:06] Starting ATLAS job with PandaID=7072390120
[2026-04-01 01:17:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 01:48:27]  *** The last 200 lines of the pilot log: ***
[2026-04-01 01:48:27]  protocol_id=None
[2026-04-01 01:48:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-01 01:48:27]  replicas=None
[2026-04-01 01:48:27]  scope=mc23_13p6TeV
[2026-04-01 01:48:27]  status=None
[2026-04-01 01:48:27]  status_code=0
[2026-04-01 01:48:27]  storage_token=
[2026-04-01 01:48:27]  surl=/var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/log.49263208._010485.job.log.tgz.1
[2026-04-01 01:48:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/83/log.49263208._010485.job.log.tgz.1
[2026-04-01 01:48:27]  workdir=None
[2026-04-01 01:48:27] ]
[2026-04-01 01:48:27] 2026-03-31 23:47:26,693 | INFO     | transferring file log.49263208._010485.job.log.tgz.1 from /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/log.49263208._010485.job.log.tgz.1 to /var/lib/
[2026-04-01 01:48:27] 2026-03-31 23:47:26,693 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/log.49263208._010485.job.log.tgz.1 /var/lib/boinc/var/slot216/slots/0/
[2026-04-01 01:48:27] 2026-03-31 23:47:26,710 | INFO     | adding to output.list: log.49263208._010485.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/83/log.49263208._010485.job.log.tg
[2026-04-01 01:48:27] 2026-03-31 23:47:26,711 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-01 01:48:27] 2026-03-31 23:47:26,711 | INFO     | summary of transferred files:
[2026-04-01 01:48:27] 2026-03-31 23:47:26,711 | INFO     |  -- lfn=log.49263208._010485.job.log.tgz.1, status_code=0, status=transferred
[2026-04-01 01:48:27] 2026-03-31 23:47:26,711 | INFO     | stage-out finished correctly
[2026-04-01 01:48:27] 2026-03-31 23:47:26,758 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-01 01:48:27] 2026-03-31 23:47:26,923 | INFO     | job 7072390120 has state=finished
[2026-04-01 01:48:27] 2026-03-31 23:47:26,923 | INFO     | preparing for final server update for job 7072390120 in state='finished'
[2026-04-01 01:48:27] 2026-03-31 23:47:26,924 | INFO     | reading metadata from: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/jobReport.json
[2026-04-01 01:48:27] 2026-03-31 23:47:26,925 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot216/slots/0/workernode_map.json
[2026-04-01 01:48:27] 2026-03-31 23:47:26,925 | INFO     | this job has now completed (state=finished)
[2026-04-01 01:48:27] 2026-03-31 23:47:26,925 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 01:48:27] 2026-03-31 23:47:26,925 | INFO     | log transfer has been attempted: DONE
[2026-04-01 01:48:27] 2026-03-31 23:47:26,925 | INFO     | job 7072390120 has finished - writing final server update
[2026-04-01 01:48:27] 2026-03-31 23:47:26,926 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2912049/.job.ad'
[2026-04-01 01:48:27] 2026-03-31 23:47:26,926 | INFO     | total number of processed events: 400 (read)
[2026-04-01 01:48:27] 2026-03-31 23:47:26,943 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 01:48:27] 2026-03-31 23:47:26,943 | INFO     | extracted standard info from prmon json
[2026-04-01 01:48:27] 2026-03-31 23:47:26,943 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | INFO     | fitting pss+swap vs Time
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | INFO     | sum of square deviations: 3765652.0
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | INFO     | sum of deviations: -248403529.0
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | INFO     | mean x (centered): 0.0
[2026-04-01 01:48:27] 2026-03-31 23:47:26,944 | INFO     | mean y: 2746228.913043478
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | intersect: 2746228.913043478
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | chi2: 0.0010623627613281716
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | current memory leak: -65.97 B/s (using 23 data points, chi2=0.00)
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | could have reported an average CPU frequency of 3610 MHz (5 samples)
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | ..............................
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . Timing measurements:
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . get job = 0 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . initial setup = 4 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . payload setup = 6 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . stage-in = 0 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . payload execution = 1786 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . stage-out = 0 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | . log creation = 0 s
[2026-04-01 01:48:27] 2026-03-31 23:47:26,945 | INFO     | ..............................
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | 
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | job summary report
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | --------------------------------------------------
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | PanDA job id: 7072390120
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | task id: 49263208
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | errors: (none)
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | pilot state: finished 
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | transexitcode: 0
[2026-04-01 01:48:27] 2026-03-31 23:47:27,414 | INFO     | exeerrorcode: 0
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | exeerrordiag: 
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | exitcode: 0
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | exitmsg: OK
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | cpuconsumptiontime: 18523 s
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | nevents: 400
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | neventsw: 0
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | pid: 3407787
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | pgrp: 3407787
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | corecount: 12
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | event service: False
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | sizes: {0: 2281603, 11: 2281603, 1796: 2306523, 1797: 2315545, 1798: 2315827}
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | --------------------------------------------------
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | 
[2026-04-01 01:48:27] 2026-03-31 23:47:27,415 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/0
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | job 7072390120 has completed (purged errors)
[2026-04-01 01:48:27] 2026-03-31 23:47:27,432 | INFO     | overall cleanup function is called
[2026-04-01 01:48:27] 2026-03-31 23:47:28,439 | INFO     | --- collectZombieJob: --- 10, [3407787]
[2026-04-01 01:48:27] 2026-03-31 23:47:28,439 | INFO     | zombie collector waiting for pid 3407787
[2026-04-01 01:48:27] 2026-03-31 23:47:28,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 01:48:27] 2026-03-31 23:47:28,439 | INFO     | collected zombie processes
[2026-04-01 01:48:27] 2026-03-31 23:47:28,439 | INFO     | will attempt to kill all subprocesses of pid=3407787
[2026-04-01 01:48:27] 2026-03-31 23:47:28,799 | INFO     | process IDs to be killed: [3407787] (in reverse order)
[2026-04-01 01:48:27] 2026-03-31 23:47:28,950 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 01:48:27] 2026-03-31 23:47:28,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 01:48:27] 2026-03-31 23:47:28,975 | INFO     | did not find any defunct processes belonging to 3407787
[2026-04-01 01:48:27] 2026-03-31 23:47:28,999 | INFO     | did not find any defunct processes belonging to 3407787
[2026-04-01 01:48:27] 2026-03-31 23:47:28,999 | INFO     | Ready for new job
[2026-04-01 01:48:27] 2026-03-31 23:47:29,000 | INFO     | **************************************
[2026-04-01 01:48:27] 2026-03-31 23:47:29,000 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-04-01 01:48:27] 2026-03-31 23:47:29,000 | INFO     | **************************************
[2026-04-01 01:48:27] 2026-03-31 23:47:29,000 | INFO     | 
[2026-04-01 01:48:27] 2026-03-31 23:47:29,005 | INFO     | architecture information:
[2026-04-01 01:48:27] 2026-03-31 23:47:29,006 | INFO     | executing command: cat /etc/os-release
[2026-04-01 01:48:27] 2026-03-31 23:47:29,023 | INFO     | cat /etc/os-release:
[2026-04-01 01:48:27] NAME="CentOS Linux"
[2026-04-01 01:48:27] VERSION="7 (Core)"
[2026-04-01 01:48:27] ID="centos"
[2026-04-01 01:48:27] ID_LIKE="rhel fedora"
[2026-04-01 01:48:27] VERSION_ID="7"
[2026-04-01 01:48:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 01:48:27] ANSI_COLOR="0;31"
[2026-04-01 01:48:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 01:48:27] HOME_URL="https://www.centos.org/"
[2026-04-01 01:48:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 01:48:27] 
[2026-04-01 01:48:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 01:48:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 01:48:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 01:48:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 01:48:27] 
[2026-04-01 01:48:27] 2026-03-31 23:47:29,023 | INFO     | **************************************
[2026-04-01 01:48:27] 2026-03-31 23:47:29,526 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-04-01 01:48:27] 2026-03-31 23:47:29,540 | INFO     | sufficient remaining disk space (226796503040 B)
[2026-04-01 01:48:27] 2026-03-31 23:47:29,540 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 01:48:27] 2026-03-31 23:47:29,540 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 01:48:27] 2026-03-31 23:47:29,541 | INFO     | update_server=False
[2026-04-01 01:48:27] 2026-03-31 23:47:29,541 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-01 01:48:27] 2026-03-31 23:47:29,700 | INFO     | all payload control threads have been joined
[2026-04-01 01:48:27] 2026-03-31 23:47:29,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 01:48:27] 2026-03-31 23:47:30,547 | INFO     | [job] retrieve thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:30,611 | INFO     | all data control threads have been joined
[2026-04-01 01:48:27] 2026-03-31 23:47:30,699 | WARNING  | process 3407787 can no longer be monitored (due to stat problems) - aborting
[2026-04-01 01:48:27] 2026-03-31 23:47:30,701 | INFO     | [payload] control thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:30,883 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:30,916 | INFO     | [payload] validate_post thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:30,949 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 01:48:27] 2026-03-31 23:47:30,949 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 01:48:27] 2026-03-31 23:47:30,950 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-01 01:48:27] 2026-03-31 23:47:30,950 | WARNING  | maxPSS not found in memory monitor output
[2026-04-01 01:48:27] 2026-03-31 23:47:30,950 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/payload.stdout) since it has not been created yet
[2026-04-01 01:48:27] 2026-03-31 23:47:30,950 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-04-01 01:48:27] 2026-03-31 23:47:30,961 | INFO     | sufficient remaining disk space (226795454464 B)
[2026-04-01 01:48:27] 2026-03-31 23:47:30,964 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-01 01:48:27] 2026-03-31 23:47:30,964 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7072390120/HITS.49263208._010485.pool.root.1 since it does not exist
[2026-04-01 01:48:27] 2026-03-31 23:47:31,109 | INFO     | all job control threads have been joined
[2026-04-01 01:48:27] 2026-03-31 23:47:31,318 | INFO     | number of running child processes to parent process 3407787: 1
[2026-04-01 01:48:27] 2026-03-31 23:47:31,318 | INFO     | maximum number of monitored processes: 6
[2026-04-01 01:48:27] 2026-03-31 23:47:31,318 | INFO     | aborting job monitoring since job object (job id=7072390120) has expired
[2026-04-01 01:48:27] 2026-03-31 23:47:31,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 01:48:27] 2026-03-31 23:47:31,318 | INFO     | will abort loop
[2026-04-01 01:48:27] 2026-03-31 23:47:31,455 | INFO     | [job] validate thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:31,535 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:31,617 | INFO     | [data] control thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:31,739 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:31,769 | INFO     | [data] copytool_out thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:31,905 | INFO     | [data] copytool_in thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:31,915 | INFO     | [payload] failed_post thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:32,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 01:48:27] 2026-03-31 23:47:32,028 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:32,114 | INFO     | [job] control thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:32,323 | INFO     | [job] job monitor thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:32,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 01:48:27] 2026-03-31 23:47:33,010 | INFO     | [job] queue monitor thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:36,816 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 01:48:27] 2026-03-31 23:47:59,205 | INFO     | PID=3401913 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 01:48:27] 2026-03-31 23:47:59,205 | INFO     | .. there are 14 such processes running
[2026-04-01 01:48:27] 2026-03-31 23:47:59,206 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 01:48:27] 2026-03-31 23:47:59,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 01:48:27] 2026-03-31 23:47:59,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 01:48:27] 2026-03-31 23:48:20,573 | INFO     | [monitor] cgroup control has ended
[2026-04-01 01:48:27] 2026-03-31 23:48:22,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23026391631680)>', '<ExcThread(monitor, started 23026153568000)>']
[2026-04-01 01:48:27] 2026-03-31 23:48:23,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 01:48:27] 2026-03-31 23:48:23,315 | INFO     | [monitor] control thread has ended
[2026-04-01 01:48:27] 2026-03-31 23:48:27,469 | INFO     | all workflow threads have been joined
[2026-04-01 01:48:27] 2026-03-31 23:48:27,469 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 01:48:27] 2026-03-31 23:48:27,469 | INFO     | traces error code: 0
[2026-04-01 01:48:27] 2026-03-31 23:48:27,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 01:48:27] 2026-03-31 23:48:27,586 [wrapper] ==== pilot stdout END ====
[2026-04-01 01:48:27] 2026-03-31 23:48:27,589 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 01:48:27] 2026-03-31 23:48:27,591 [wrapper] pilotpid: 3401913
[2026-04-01 01:48:27] 2026-03-31 23:48:27,594 [wrapper] Pilot exit status: 0
[2026-04-01 01:48:27] 2026-03-31 23:48:27,603 [wrapper] pandaids: 7072390120
[2026-04-01 01:48:27] 2026-03-31 23:48:27,705 [wrapper] cleanup supervisor_pilot 3648435 3401914
[2026-04-01 01:48:27] 2026-03-31 23:48:27,708 [wrapper] Test setup, not cleaning
[2026-04-01 01:48:27] 2026-03-31 23:48:27,710 [wrapper] apfmon messages muted
[2026-04-01 01:48:27] 2026-03-31 23:48:27,712 [wrapper] ==== wrapper stdout END ====
[2026-04-01 01:48:27] 2026-03-31 23:48:27,713 [wrapper] ==== wrapper stderr END ====
[2026-04-01 01:48:27]  *** Error codes and diagnostics ***
[2026-04-01 01:48:27]     "exeErrorCode": 0,
[2026-04-01 01:48:27]     "pilotErrorCode": 0,
[2026-04-01 01:48:27]  *** Listing of results directory ***
[2026-04-01 01:48:27] total 421196
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc    644034 Mar 30 23:19 pilot3.tar.gz
[2026-04-01 01:48:27] -rwx------. 1 boinc boinc     36322 Mar 30 23:22 runpilot2-wrapper.sh
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc      5118 Mar 30 23:24 queuedata.json
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc       100 Apr  1 01:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 01:48:27] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 01:17 run_atlas
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc       105 Apr  1 01:17 job.xml
[2026-04-01 01:48:27] -rw-r--r--. 2 boinc boinc 223472859 Apr  1 01:17 EVNT.49263206._000469.pool.root.1
[2026-04-01 01:48:27] -rw-r--r--. 2 boinc boinc     15845 Apr  1 01:17 start_atlas.sh
[2026-04-01 01:48:27] drwxrwx--x. 2 boinc boinc      4096 Apr  1 01:17 shared
[2026-04-01 01:48:27] -rw-r--r--. 2 boinc boinc    656747 Apr  1 01:17 input.tar.gz
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc      6712 Apr  1 01:17 init_data.xml
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc         0 Apr  1 01:17 boinc_lockfile
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc      2575 Apr  1 01:17 pandaJob.out
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc   1005014 Apr  1 01:17 agis_schedconf.cvmfs.json
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc   1511579 Apr  1 01:17 agis_ddmendpoints.agis.ALL.json
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc       444 Apr  1 01:17 workernode_map.json
[2026-04-01 01:48:27] drwx------. 5 boinc boinc      4096 Apr  1 01:17 pilot3
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc 202662862 Apr  1 01:46 HITS.49263208._010485.pool.root.1
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc       529 Apr  1 01:47 boinc_task_state.xml
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc      1027 Apr  1 01:47 memory_monitor_summary.json
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc    332688 Apr  1 01:47 log.49263208._010485.job.log.tgz.1
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc      6383 Apr  1 01:47 heartbeat_new.json
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc      6274 Apr  1 01:47 heartbeat.json
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc        95 Apr  1 01:47 pilot_heartbeat.json
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc      8192 Apr  1 01:48 boinc_mmap_file
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc        27 Apr  1 01:48 wrapper_checkpoint.txt
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc      6376 Apr  1 01:48 pilotlog.txt
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc    217625 Apr  1 01:48 log.49263208._010485.job.log.1
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc       357 Apr  1 01:48 output.list
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc       620 Apr  1 01:48 runtime_log
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc    563200 Apr  1 01:48 result.tar.gz
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc      9223 Apr  1 01:48 runtime_log.err
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc       659 Apr  1 01:48 IbNKDmHFZR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmY3OKDmphNDUn.diag
[2026-04-01 01:48:27] -rw-r--r--. 1 boinc boinc     21840 Apr  1 01:48 stderr.txt
[2026-04-01 01:48:27] HITS file was successfully produced:
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc 202662862 Apr  1 01:46 shared/HITS.pool.root.1
[2026-04-01 01:48:27]  *** Contents of shared directory: ***
[2026-04-01 01:48:27] total 417372
[2026-04-01 01:48:27] -rw-r--r--. 2 boinc boinc 223472859 Apr  1 01:17 ATLAS.root_0
[2026-04-01 01:48:27] -rw-r--r--. 2 boinc boinc     15845 Apr  1 01:17 start_atlas.sh
[2026-04-01 01:48:27] -rw-r--r--. 2 boinc boinc    656747 Apr  1 01:17 input.tar.gz
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc 202662862 Apr  1 01:46 HITS.pool.root.1
[2026-04-01 01:48:27] -rw-------. 1 boinc boinc    563200 Apr  1 01:48 result.tar.gz
01:48:28 (3396785): run_atlas exited; CPU time 18578.161271
01:48:28 (3396785): called boinc_finish(0)

</stderr_txt>
]]>

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