Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:27:22 (2417724): wrapper (7.7.26015): starting
05:27:22 (2417724): wrapper: running run_atlas (--nthreads 12)
[2026-04-05 05:27:22] Arguments: --nthreads 12
[2026-04-05 05:27:22] Threads: 12
[2026-04-05 05:27:22] Checking for CVMFS
[2026-04-05 05:27:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-05 05:27:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-05 05:27:23] Running cvmfs_config stat atlas.cern.ch
[2026-04-05 05:27:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-05 05:27:24] 2.13.3.0 3021178 15774 69124 158101 0 188 4010442 4096000 24148 130560 0 75866738 99.986 964274 2243 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-04-05 05:27:24] CVMFS is ok
[2026-04-05 05:27:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 05:27:24] Checking for apptainer binary...
[2026-04-05 05:27:24] apptainer is not installed, using version from CVMFS
[2026-04-05 05:27:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 05:27:26] epyc7v12
[2026-04-05 05:27:26] apptainer works
[2026-04-05 05:27:26] Set ATHENA_PROC_NUMBER=12
[2026-04-05 05:27:26] Set ATHENA_CORE_NUMBER=12
[2026-04-05 05:27:26] Starting ATLAS job with PandaID=7072265392
[2026-04-05 05:27:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31427/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-05 08:25:52]  *** The last 200 lines of the pilot log: ***
[2026-04-05 08:25:52] 2026-04-05 08:25:17,830 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/0/PanDA_Pilot-7072265392/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 08:25:52] 2026-04-05 08:25:17,831 | INFO     | extracted standard info from prmon json
[2026-04-05 08:25:52] 2026-04-05 08:25:17,831 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 08:25:52] 2026-04-05 08:25:17,831 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 08:25:52] 2026-04-05 08:25:17,831 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 08:25:52] 2026-04-05 08:25:17,837 | INFO     | fitting pss+swap vs Time
[2026-04-05 08:25:52] 2026-04-05 08:25:17,837 | INFO     | sum of square deviations: 1633443761.3563228
[2026-04-05 08:25:52] 2026-04-05 08:25:17,842 | INFO     | sum of deviations: 50411060343.66658
[2026-04-05 08:25:52] 2026-04-05 08:25:17,843 | INFO     | mean x (centered): 0.0
[2026-04-05 08:25:52] 2026-04-05 08:25:17,843 | INFO     | mean y: 2583622.6666666665
[2026-04-05 08:25:52] 2026-04-05 08:25:17,843 | INFO     | intersect: 2583622.6666666665
[2026-04-05 08:25:52] 2026-04-05 08:25:17,844 | INFO     | chi2: 3.575116832752399
[2026-04-05 08:25:52] 2026-04-05 08:25:17,844 | INFO     | sum of square deviations: 1496633418.8520725
[2026-04-05 08:25:52] 2026-04-05 08:25:17,847 | INFO     | sum of deviations: 61245103141.781075
[2026-04-05 08:25:52] 2026-04-05 08:25:17,847 | INFO     | mean x (centered): 0.0
[2026-04-05 08:25:52] 2026-04-05 08:25:17,847 | INFO     | mean y: 2595371.4437869824
[2026-04-05 08:25:52] 2026-04-05 08:25:17,847 | INFO     | intersect: 2595371.4437869824
[2026-04-05 08:25:52] 2026-04-05 08:25:17,848 | INFO     | chi2: 2.765716790793557
[2026-04-05 08:25:52] 2026-04-05 08:25:17,848 | INFO     | current chi2=2.765716790793557 (change=22.639820733794135 %)
[2026-04-05 08:25:52] 2026-04-05 08:25:17,848 | INFO     | right removable region: 168
[2026-04-05 08:25:52] 2026-04-05 08:25:17,848 | INFO     | sum of square deviations: 1496630368.8520725
[2026-04-05 08:25:52] 2026-04-05 08:25:17,851 | INFO     | sum of deviations: 6141718220.159767
[2026-04-05 08:25:52] 2026-04-05 08:25:17,852 | INFO     | mean x (centered): 0.0
[2026-04-05 08:25:52] 2026-04-05 08:25:17,852 | INFO     | mean y: 2632679.5680473372
[2026-04-05 08:25:52] 2026-04-05 08:25:17,852 | INFO     | intersect: 2632679.5680473372
[2026-04-05 08:25:52] 2026-04-05 08:25:17,852 | INFO     | chi2: 1.1315026475191603
[2026-04-05 08:25:52] 2026-04-05 08:25:17,852 | INFO     | current chi2=1.1315026475191603 (change=68.35061061072953 %)
[2026-04-05 08:25:52] 2026-04-05 08:25:17,853 | INFO     | sum of square deviations: 1367677588.8475583
[2026-04-05 08:25:52] 2026-04-05 08:25:17,854 | INFO     | sum of deviations: -8781249738.207317
[2026-04-05 08:25:52] 2026-04-05 08:25:17,854 | INFO     | mean x (centered): 0.0
[2026-04-05 08:25:52] 2026-04-05 08:25:17,857 | INFO     | mean y: 2650271.8414634145
[2026-04-05 08:25:52] 2026-04-05 08:25:17,857 | INFO     | intersect: 2650271.8414634145
[2026-04-05 08:25:52] 2026-04-05 08:25:17,857 | INFO     | chi2: 0.8847003940950983
[2026-04-05 08:25:52] 2026-04-05 08:25:17,857 | INFO     | current chi2=0.8847003940950983 (change=21.811902425962533 %)
[2026-04-05 08:25:52] 2026-04-05 08:25:17,858 | INFO     | left removable region: 10
[2026-04-05 08:25:52] 2026-04-05 08:25:17,858 | INFO     | sum of square deviations: 1222986473.3417752
[2026-04-05 08:25:52] 2026-04-05 08:25:17,860 | INFO     | sum of deviations: 3073423282.227847
[2026-04-05 08:25:52] 2026-04-05 08:25:17,860 | INFO     | mean x (centered): 0.0
[2026-04-05 08:25:52] 2026-04-05 08:25:17,860 | INFO     | mean y: 2664802.35443038
[2026-04-05 08:25:52] 2026-04-05 08:25:17,860 | INFO     | intersect: 2664802.35443038
[2026-04-05 08:25:52] 2026-04-05 08:25:17,861 | INFO     | chi2: 0.04041515121130208
[2026-04-05 08:25:52] 2026-04-05 08:25:17,861 | INFO     | current memory leak: 2.51 B/s (using 158 data points, chi2=0.04)
[2026-04-05 08:25:52] 2026-04-05 08:25:17,861 | INFO     | could have reported an average CPU frequency of 2393 MHz (9 samples)
[2026-04-05 08:25:52] 2026-04-05 08:25:17,861 | INFO     | ..............................
[2026-04-05 08:25:52] 2026-04-05 08:25:17,861 | INFO     | . Timing measurements:
[2026-04-05 08:25:52] 2026-04-05 08:25:17,862 | INFO     | . get job = 0 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,862 | INFO     | . initial setup = 16 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,862 | INFO     | . payload setup = 29 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,862 | INFO     | . stage-in = 0 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,866 | INFO     | . payload execution = 10578 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,866 | INFO     | . stage-out = 1 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,866 | INFO     | . log creation = 0 s
[2026-04-05 08:25:52] 2026-04-05 08:25:17,866 | INFO     | ..............................
[2026-04-05 08:25:52] 2026-04-05 08:25:18,286 | INFO     | 
[2026-04-05 08:25:52] 2026-04-05 08:25:18,286 | INFO     | job summary report
[2026-04-05 08:25:52] 2026-04-05 08:25:18,286 | INFO     | --------------------------------------------------
[2026-04-05 08:25:52] 2026-04-05 08:25:18,286 | INFO     | PanDA job id: 7072265392
[2026-04-05 08:25:52] 2026-04-05 08:25:18,286 | INFO     | task id: 49263200
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | errors: (none)
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | pilot state: finished 
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | transexitcode: 0
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | exeerrorcode: 0
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | exeerrordiag: 
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | exitcode: 0
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | exitmsg: OK
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | cpuconsumptiontime: 45795 s
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | nevents: 400
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | neventsw: 0
[2026-04-05 08:25:52] 2026-04-05 08:25:18,287 | INFO     | pid: 2426941
[2026-04-05 08:25:52] 2026-04-05 08:25:18,288 | INFO     | pgrp: 2426941
[2026-04-05 08:25:52] 2026-04-05 08:25:18,288 | INFO     | corecount: 12
[2026-04-05 08:25:52] 2026-04-05 08:25:18,288 | INFO     | event service: False
[2026-04-05 08:25:52] 2026-04-05 08:25:18,288 | INFO     | sizes: {0: 2279809, 1: 2281638, 2: 2281638, 10611: 2310590, 10614: 2319634, 10615: 2319690, 10617: 2320076}
[2026-04-05 08:25:52] 2026-04-05 08:25:18,290 | INFO     | --------------------------------------------------
[2026-04-05 08:25:52] 2026-04-05 08:25:18,290 | INFO     | 
[2026-04-05 08:25:52] 2026-04-05 08:25:18,290 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-04-05 08:25:52] 2026-04-05 08:25:18,370 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,372 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-05 08:25:52] 2026-04-05 08:25:18,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,373 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-05 08:25:52] 2026-04-05 08:25:18,379 | INFO     | job 7072265392 has completed (purged errors)
[2026-04-05 08:25:52] 2026-04-05 08:25:18,379 | INFO     | overall cleanup function is called
[2026-04-05 08:25:52] 2026-04-05 08:25:19,397 | INFO     | --- collectZombieJob: --- 10, [2426941]
[2026-04-05 08:25:52] 2026-04-05 08:25:19,397 | INFO     | zombie collector waiting for pid 2426941
[2026-04-05 08:25:52] 2026-04-05 08:25:19,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-05 08:25:52] 2026-04-05 08:25:19,397 | INFO     | collected zombie processes
[2026-04-05 08:25:52] 2026-04-05 08:25:19,398 | INFO     | will attempt to kill all subprocesses of pid=2426941
[2026-04-05 08:25:52] 2026-04-05 08:25:20,270 | WARNING  | process 2426941 can no longer be monitored (due to stat problems) - aborting
[2026-04-05 08:25:52] 2026-04-05 08:25:21,406 | INFO     | process IDs to be killed: [2426941] (in reverse order)
[2026-04-05 08:25:52] 2026-04-05 08:25:21,577 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 08:25:52] 2026-04-05 08:25:21,580 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 08:25:52] 2026-04-05 08:25:21,580 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-05 08:25:52] 2026-04-05 08:25:21,581 | WARNING  | maxPSS not found in memory monitor output
[2026-04-05 08:25:52] 2026-04-05 08:25:21,581 | INFO     | skipping file size check of payload stdout file (/opt/boinc/instance_homes/boinc_31427/slots/0/PanDA_Pilot-7072265392/payload.stdout) since it has not been created
[2026-04-05 08:25:52] 2026-04-05 08:25:21,581 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-04-05 08:25:52] 2026-04-05 08:25:21,629 | INFO     | sufficient remaining disk space (384459341824 B)
[2026-04-05 08:25:52] 2026-04-05 08:25:21,630 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-05 08:25:52] 2026-04-05 08:25:21,630 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31427/slots/0/PanDA_Pilot-7072265392/HITS.49263200._009892.pool.root.1 since it does n
[2026-04-05 08:25:52] 2026-04-05 08:25:22,195 | WARNING  | found no corresponding commands to process id(s)
[2026-04-05 08:25:52] 2026-04-05 08:25:22,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-05 08:25:52] 2026-04-05 08:25:22,244 | INFO     | did not find any defunct processes belonging to 2426941
[2026-04-05 08:25:52] 2026-04-05 08:25:22,288 | INFO     | did not find any defunct processes belonging to 2426941
[2026-04-05 08:25:52] 2026-04-05 08:25:22,288 | INFO     | Ready for new job
[2026-04-05 08:25:52] 2026-04-05 08:25:22,293 | INFO     | **************************************
[2026-04-05 08:25:52] 2026-04-05 08:25:22,293 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-04-05 08:25:52] 2026-04-05 08:25:22,294 | INFO     | **************************************
[2026-04-05 08:25:52] 2026-04-05 08:25:22,294 | INFO     | 
[2026-04-05 08:25:52] 2026-04-05 08:25:22,324 | INFO     | architecture information:
[2026-04-05 08:25:52] 2026-04-05 08:25:22,326 | INFO     | executing command: cat /etc/os-release
[2026-04-05 08:25:52] 2026-04-05 08:25:22,365 | INFO     | cat /etc/os-release:
[2026-04-05 08:25:52] NAME="CentOS Linux"
[2026-04-05 08:25:52] VERSION="7 (Core)"
[2026-04-05 08:25:52] ID="centos"
[2026-04-05 08:25:52] ID_LIKE="rhel fedora"
[2026-04-05 08:25:52] VERSION_ID="7"
[2026-04-05 08:25:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-05 08:25:52] ANSI_COLOR="0;31"
[2026-04-05 08:25:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-05 08:25:52] HOME_URL="https://www.centos.org/"
[2026-04-05 08:25:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-05 08:25:52] 
[2026-04-05 08:25:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-05 08:25:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-05 08:25:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-05 08:25:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-05 08:25:52] 
[2026-04-05 08:25:52] 2026-04-05 08:25:22,366 | INFO     | **************************************
[2026-04-05 08:25:52] 2026-04-05 08:25:22,868 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-04-05 08:25:52] 2026-04-05 08:25:22,912 | INFO     | sufficient remaining disk space (384456196096 B)
[2026-04-05 08:25:52] 2026-04-05 08:25:22,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-05 08:25:52] 2026-04-05 08:25:22,913 | INFO     | current server update state: UPDATING_FINAL
[2026-04-05 08:25:52] 2026-04-05 08:25:22,913 | INFO     | update_server=False
[2026-04-05 08:25:52] 2026-04-05 08:25:22,913 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-05 08:25:52] 2026-04-05 08:25:23,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-05 08:25:52] 2026-04-05 08:25:23,163 | INFO     | number of running child processes to parent process 2426941: 1
[2026-04-05 08:25:52] 2026-04-05 08:25:23,163 | INFO     | maximum number of monitored processes: 6
[2026-04-05 08:25:52] 2026-04-05 08:25:23,163 | INFO     | aborting job monitoring since job object (job id=7072265392) has expired
[2026-04-05 08:25:52] 2026-04-05 08:25:23,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-05 08:25:52] 2026-04-05 08:25:23,164 | INFO     | will abort loop
[2026-04-05 08:25:52] 2026-04-05 08:25:23,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-05 08:25:52] 2026-04-05 08:25:23,467 | INFO     | all data control threads have been joined
[2026-04-05 08:25:52] 2026-04-05 08:25:23,918 | INFO     | [job] retrieve thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:23,976 | INFO     | all payload control threads have been joined
[2026-04-05 08:25:52] 2026-04-05 08:25:24,042 | INFO     | [payload] validate_pre thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,116 | INFO     | [job] queue monitor thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,174 | INFO     | [job] job monitor thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,176 | INFO     | all job control threads have been joined
[2026-04-05 08:25:52] 2026-04-05 08:25:24,371 | INFO     | [job] validate thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,372 | INFO     | [data] copytool_in thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,472 | INFO     | [data] control thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,885 | INFO     | [payload] validate_post thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,898 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,966 | INFO     | [payload] failed_post thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:24,981 | INFO     | [payload] control thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:25,171 | INFO     | [job] create_data_payload thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:25,181 | INFO     | [job] control thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:25,237 | INFO     | [data] copytool_out thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:25,398 | INFO     | [payload] execute_payloads thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:26,329 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-05 08:25:52] 2026-04-05 08:25:30,336 | INFO     | [data] queue_monitor thread has finished
[2026-04-05 08:25:52] 2026-04-05 08:25:35,866 | INFO     | [monitor] cgroup control has ended
[2026-04-05 08:25:52] 2026-04-05 08:25:36,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131001325229888)>', '<ExcThread(monitor, started 131000789100288)>']
[2026-04-05 08:25:52] 2026-04-05 08:25:41,453 | INFO     | all workflow threads have been joined
[2026-04-05 08:25:52] 2026-04-05 08:25:41,453 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-05 08:25:52] 2026-04-05 08:25:41,454 | INFO     | traces error code: 0
[2026-04-05 08:25:52] 2026-04-05 08:25:41,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-05 08:25:52] 2026-04-05 08:25:51,852 | INFO     | PID=2421939 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-05 08:25:52] 2026-04-05 08:25:51,852 | INFO     | .. there are 25 such processes running
[2026-04-05 08:25:52] 2026-04-05 08:25:51,853 | INFO     | found 0 job(s) in 20 queues
[2026-04-05 08:25:52] 2026-04-05 08:25:51,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-05 08:25:52] 2026-04-05 08:25:51,853 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-05 08:25:52] 2026-04-05 08:25:51,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-05 08:25:52] 2026-04-05 08:25:51,853 | INFO     | [monitor] control thread has ended
[2026-04-05 08:25:52] 2026-04-05 08:25:52,020 [wrapper] ==== pilot stdout END ====
[2026-04-05 08:25:52] 2026-04-05 08:25:52,035 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-05 08:25:52] 2026-04-05 08:25:52,044 [wrapper] pilotpid: 2421939
[2026-04-05 08:25:52] 2026-04-05 08:25:52,051 [wrapper] Pilot exit status: 0
[2026-04-05 08:25:52] 2026-04-05 08:25:52,086 [wrapper] pandaids: 7072265392
[2026-04-05 08:25:52] 2026-04-05 08:25:52,248 [wrapper] cleanup supervisor_pilot 2694497 2421940
[2026-04-05 08:25:52] 2026-04-05 08:25:52,261 [wrapper] Test setup, not cleaning
[2026-04-05 08:25:52] 2026-04-05 08:25:52,272 [wrapper] apfmon messages muted
[2026-04-05 08:25:52] 2026-04-05 08:25:52,283 [wrapper] ==== wrapper stdout END ====
[2026-04-05 08:25:52] 2026-04-05 08:25:52,290 [wrapper] ==== wrapper stderr END ====
[2026-04-05 08:25:52]  *** Error codes and diagnostics ***
[2026-04-05 08:25:52]     "exeErrorCode": 0,
[2026-04-05 08:25:52]     "pilotErrorCode": 0,
[2026-04-05 08:25:52]  *** Listing of results directory ***
[2026-04-05 08:25:52] total 418612
[2026-04-05 08:25:52] -rw-r--r-- 1 boinc boinc    644034 Mar 30 19:08 pilot3.tar.gz
[2026-04-05 08:25:52] -rwx------ 1 boinc boinc     36322 Mar 30 19:12 runpilot2-wrapper.sh
[2026-04-05 08:25:52] -rw-r--r-- 1 boinc boinc      5118 Mar 30 19:13 queuedata.json
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc       100 Apr  5 05:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-05 08:25:52] -rwxr-xr-x 1 boinc boinc      7986 Apr  5 05:27 run_atlas
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc       105 Apr  5 05:27 job.xml
[2026-04-05 08:25:52] -rw-r--r-- 2 boinc boinc 227580007 Apr  5 05:27 EVNT.49263198._000396.pool.root.1
[2026-04-05 08:25:52] -rw-r--r-- 2 boinc boinc     15845 Apr  5 05:27 start_atlas.sh
[2026-04-05 08:25:52] drwxrwx--x 2 boinc boinc      4096 Apr  5 05:27 shared
[2026-04-05 08:25:52] -rw-r--r-- 2 boinc boinc    656758 Apr  5 05:27 input.tar.gz
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc      6557 Apr  5 05:27 init_data.xml
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc         0 Apr  5 05:27 boinc_setup_complete
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc         0 Apr  5 05:27 boinc_lockfile
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc      2573 Apr  5 05:27 pandaJob.out
[2026-04-05 08:25:52] -rw------- 1 boinc boinc   1005104 Apr  5 05:28 agis_schedconf.cvmfs.json
[2026-04-05 08:25:52] -rw------- 1 boinc boinc   1511579 Apr  5 05:28 agis_ddmendpoints.agis.ALL.json
[2026-04-05 08:25:52] -rw------- 1 boinc boinc       420 Apr  5 05:28 workernode_map.json
[2026-04-05 08:25:52] drwx------ 5 boinc boinc      4096 Apr  5 05:28 pilot3
[2026-04-05 08:25:52] -rw------- 1 boinc boinc 194306687 Apr  5 08:24 HITS.49263200._009892.pool.root.1
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc       530 Apr  5 08:24 boinc_task_state.xml
[2026-04-05 08:25:52] -rw------- 1 boinc boinc      1023 Apr  5 08:25 memory_monitor_summary.json
[2026-04-05 08:25:52] -rw------- 1 boinc boinc    422953 Apr  5 08:25 log.49263200._009892.job.log.tgz.1
[2026-04-05 08:25:52] -rw------- 1 boinc boinc      6297 Apr  5 08:25 heartbeat_new.json
[2026-04-05 08:25:52] -rw------- 1 boinc boinc      6188 Apr  5 08:25 heartbeat.json
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc      8192 Apr  5 08:25 boinc_mmap_file
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc        28 Apr  5 08:25 wrapper_checkpoint.txt
[2026-04-05 08:25:52] -rw------- 1 boinc boinc        95 Apr  5 08:25 pilot_heartbeat.json
[2026-04-05 08:25:52] -rw------- 1 boinc boinc       824 Apr  5 08:25 pilotlog.txt
[2026-04-05 08:25:52] -rw------- 1 boinc boinc    928799 Apr  5 08:25 log.49263200._009892.job.log.1
[2026-04-05 08:25:52] -rw------- 1 boinc boinc       357 Apr  5 08:25 output.list
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc       620 Apr  5 08:25 runtime_log
[2026-04-05 08:25:52] -rw------- 1 boinc boinc   1372160 Apr  5 08:25 result.tar.gz
[2026-04-05 08:25:52] -rw------- 1 boinc boinc       655 Apr  5 08:25 x65MDmVDXR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmhhOKDmsQFKSn.diag
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc      9167 Apr  5 08:25 runtime_log.err
[2026-04-05 08:25:52] -rw-rw-r-- 1 boinc boinc     21365 Apr  5 08:25 stderr.txt
[2026-04-05 08:25:52] HITS file was successfully produced:
[2026-04-05 08:25:52] -rw------- 1 boinc boinc 194306687 Apr  5 08:24 shared/HITS.pool.root.1
[2026-04-05 08:25:52]  *** Contents of shared directory: ***
[2026-04-05 08:25:52] total 414012
[2026-04-05 08:25:52] -rw-r--r-- 2 boinc boinc 227580007 Apr  5 05:27 ATLAS.root_0
[2026-04-05 08:25:52] -rw-r--r-- 2 boinc boinc     15845 Apr  5 05:27 start_atlas.sh
[2026-04-05 08:25:52] -rw-r--r-- 2 boinc boinc    656758 Apr  5 05:27 input.tar.gz
[2026-04-05 08:25:52] -rw------- 1 boinc boinc 194306687 Apr  5 08:24 HITS.pool.root.1
[2026-04-05 08:25:52] -rw------- 1 boinc boinc   1372160 Apr  5 08:25 result.tar.gz
08:25:54 (2417724): run_atlas exited; CPU time 46476.201538
08:25:54 (2417724): called boinc_finish(0)

</stderr_txt>
]]>

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