Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:17 (3613788): wrapper (7.7.26015): starting
10:02:17 (3613788): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 10:02:17] Arguments: --nthreads 2
[2026-03-31 10:02:17] Threads: 2
[2026-03-31 10:02:17] Checking for CVMFS
[2026-03-31 10:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 10:02:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 10:02:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 10:02:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 10:02:17] 2.9.2.0 3201293 5059 57784 157912 2 49 19520883 36864000 0 130560 0 1635364 99.979 185903 16108 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 10:02:17] CVMFS is ok
[2026-03-31 10:02:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 10:02:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 10:02:17] Further information can be found at the LHC@home message board.
[2026-03-31 10:02:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 10:02:17] Checking for apptainer binary...
[2026-03-31 10:02:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 10:02:17] Running /usr/bin/apptainer --version
[2026-03-31 10:02:17] apptainer version 1.4.1-1.1
[2026-03-31 10:02:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 10:02:17] magicA244
[2026-03-31 10:02:17] apptainer works
[2026-03-31 10:02:17] Set ATHENA_PROC_NUMBER=2
[2026-03-31 10:02:17] Set ATHENA_CORE_NUMBER=2
[2026-03-31 10:02:17] Starting ATLAS job with PandaID=7072264540
[2026-03-31 10:02:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 12:20:45]  *** The last 200 lines of the pilot log: ***
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | job 7072264540 has completed (purged errors)
[2026-03-31 12:20:45] 2026-03-31 10:19:39,944 | INFO     | overall cleanup function is called
[2026-03-31 12:20:45] 2026-03-31 10:19:40,950 | INFO     | --- collectZombieJob: --- 10, [3622222]
[2026-03-31 12:20:45] 2026-03-31 10:19:40,950 | INFO     | zombie collector waiting for pid 3622222
[2026-03-31 12:20:45] 2026-03-31 10:19:40,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 12:20:45] 2026-03-31 10:19:40,950 | INFO     | collected zombie processes
[2026-03-31 12:20:45] 2026-03-31 10:19:40,950 | INFO     | will attempt to kill all subprocesses of pid=3622222
[2026-03-31 12:20:45] 2026-03-31 10:19:40,977 | INFO     | process IDs to be killed: [3622222] (in reverse order)
[2026-03-31 12:20:45] 2026-03-31 10:19:40,999 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 12:20:45] 2026-03-31 10:19:40,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 12:20:45] 2026-03-31 10:19:41,000 | INFO     | did not find any defunct processes belonging to 3622222
[2026-03-31 12:20:45] 2026-03-31 10:19:41,001 | INFO     | did not find any defunct processes belonging to 3622222
[2026-03-31 12:20:45] 2026-03-31 10:19:41,001 | INFO     | Ready for new job
[2026-03-31 12:20:45] 2026-03-31 10:19:41,001 | INFO     | **************************************
[2026-03-31 12:20:45] 2026-03-31 10:19:41,001 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 12:20:45] 2026-03-31 10:19:41,001 | INFO     | **************************************
[2026-03-31 12:20:45] 2026-03-31 10:19:41,001 | INFO     | 
[2026-03-31 12:20:45] 2026-03-31 10:19:41,002 | INFO     | architecture information:
[2026-03-31 12:20:45] 2026-03-31 10:19:41,002 | INFO     | executing command: cat /etc/os-release
[2026-03-31 12:20:45] 2026-03-31 10:19:41,011 | INFO     | cat /etc/os-release:
[2026-03-31 12:20:45] NAME="CentOS Linux"
[2026-03-31 12:20:45] VERSION="7 (Core)"
[2026-03-31 12:20:45] ID="centos"
[2026-03-31 12:20:45] ID_LIKE="rhel fedora"
[2026-03-31 12:20:45] VERSION_ID="7"
[2026-03-31 12:20:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 12:20:45] ANSI_COLOR="0;31"
[2026-03-31 12:20:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 12:20:45] HOME_URL="https://www.centos.org/"
[2026-03-31 12:20:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 12:20:45] 
[2026-03-31 12:20:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 12:20:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 12:20:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 12:20:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 12:20:45] 
[2026-03-31 12:20:45] 2026-03-31 10:19:41,012 | INFO     | **************************************
[2026-03-31 12:20:45] 2026-03-31 10:19:41,243 | WARNING  | process 3622222 can no longer be monitored (due to stat problems) - aborting
[2026-03-31 12:20:45] 2026-03-31 10:19:41,265 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 12:20:45] 2026-03-31 10:19:41,290 | INFO     | number of running child processes to parent process 3622222: 1
[2026-03-31 12:20:45] 2026-03-31 10:19:41,290 | INFO     | maximum number of monitored processes: 6
[2026-03-31 12:20:45] 2026-03-31 10:19:41,290 | INFO     | aborting job monitoring since job object (job id=7072264540) has expired
[2026-03-31 12:20:45] 2026-03-31 10:19:41,514 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | INFO     | sufficient remaining disk space (505038241792 B)
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | INFO     | update_server=False
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 12:20:45] 2026-03-31 10:19:41,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 12:20:45] 2026-03-31 10:19:41,525 | INFO     | will abort loop
[2026-03-31 12:20:45] 2026-03-31 10:19:41,639 | INFO     | all payload control threads have been joined
[2026-03-31 12:20:45] 2026-03-31 10:19:41,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 12:20:45] 2026-03-31 10:19:41,802 | INFO     | all data control threads have been joined
[2026-03-31 12:20:45] 2026-03-31 10:19:42,529 | INFO     | [job] queue monitor thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:42,529 | INFO     | [job] retrieve thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:42,530 | INFO     | [job] job monitor thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:42,591 | INFO     | [payload] validate_post thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:42,645 | INFO     | [payload] control thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:42,665 | INFO     | all job control threads have been joined
[2026-03-31 12:20:45] 2026-03-31 10:19:42,807 | INFO     | [data] control thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,455 | INFO     | [payload] failed_post thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,586 | INFO     | [job] validate thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,670 | INFO     | [job] control thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,695 | INFO     | [data] copytool_out thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,752 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,862 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,888 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,964 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:43,964 | INFO     | [data] copytool_in thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:19:45,530 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 12:20:45] 2026-03-31 10:20:38,829 | INFO     | [monitor] cgroup control has ended
[2026-03-31 12:20:45] 2026-03-31 10:20:40,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040427820864)>', '<ExcThread(monitor, started 140039774246656)>']
[2026-03-31 12:20:45] 2026-03-31 10:20:40,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 12:20:45] 2026-03-31 10:20:40,819 | INFO     | [monitor] control thread has ended
[2026-03-31 12:20:45] 2026-03-31 10:20:45,827 | INFO     | all workflow threads have been joined
[2026-03-31 12:20:45] 2026-03-31 10:20:45,827 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 12:20:45] 2026-03-31 10:20:45,827 | INFO     | traces error code: 0
[2026-03-31 12:20:45] 2026-03-31 10:20:45,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 12:20:45] 2026-03-31 10:20:45,872 [wrapper] ==== pilot stdout END ====
[2026-03-31 12:20:45] 2026-03-31 10:20:45,875 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 12:20:45] 2026-03-31 10:20:45,877 [wrapper] pilotpid: 3617813
[2026-03-31 12:20:45] 2026-03-31 10:20:45,879 [wrapper] Pilot exit status: 0
[2026-03-31 12:20:45] 2026-03-31 10:20:45,886 [wrapper] pandaids: 7072264540
[2026-03-31 12:20:45] 2026-03-31 10:20:45,902 [wrapper] cleanup supervisor_pilot 3627651 3617814
[2026-03-31 12:20:45] 2026-03-31 10:20:45,904 [wrapper] Test setup, not cleaning
[2026-03-31 12:20:45] 2026-03-31 10:20:45,907 [wrapper] apfmon messages muted
[2026-03-31 12:20:45] 2026-03-31 10:20:45,910 [wrapper] ==== wrapper stdout END ====
[2026-03-31 12:20:45] 2026-03-31 10:20:45,912 [wrapper] ==== wrapper stderr END ====
[2026-03-31 12:20:45]  *** Error codes and diagnostics ***
[2026-03-31 12:20:45]     "exeErrorCode": 0,
[2026-03-31 12:20:45]     "pilotErrorCode": 0,
[2026-03-31 12:20:45]  *** Listing of results directory ***
[2026-03-31 12:20:45] total 421988
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc    644034 Mar 30 21:08 pilot3.tar.gz
[2026-03-31 12:20:45] -rwx------ 1 boinc boinc     36322 Mar 30 21:11 runpilot2-wrapper.sh
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc      5118 Mar 30 21:13 queuedata.json
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc       100 Mar 31 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 12:20:45] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 10:02 run_atlas
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc       105 Mar 31 10:02 job.xml
[2026-03-31 12:20:45] -rw-r--r-- 2 boinc boinc 225984686 Mar 31 10:02 EVNT.49263206._000441.pool.root.1
[2026-03-31 12:20:45] -rw-r--r-- 2 boinc boinc    656756 Mar 31 10:02 input.tar.gz
[2026-03-31 12:20:45] -rw-r--r-- 2 boinc boinc     15845 Mar 31 10:02 start_atlas.sh
[2026-03-31 12:20:45] drwxrwx--x 2 boinc boinc      4096 Mar 31 10:02 shared
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc         0 Mar 31 10:02 boinc_setup_complete
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc      6208 Mar 31 10:02 init_data.xml
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc         0 Mar 31 10:02 boinc_lockfile
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc      2573 Mar 31 10:02 pandaJob.out
[2026-03-31 12:20:45] -rw------- 1 boinc boinc   1003268 Mar 31 10:02 agis_schedconf.cvmfs.json
[2026-03-31 12:20:45] -rw------- 1 boinc boinc   1511579 Mar 31 10:02 agis_ddmendpoints.agis.ALL.json
[2026-03-31 12:20:45] -rw------- 1 boinc boinc       422 Mar 31 10:02 workernode_map.json
[2026-03-31 12:20:45] drwx------ 5 boinc boinc      4096 Mar 31 10:02 pilot3
[2026-03-31 12:20:45] -rw------- 1 boinc boinc        95 Mar 31 12:18 pilot_heartbeat.json
[2026-03-31 12:20:45] -rw------- 1 boinc boinc 200035328 Mar 31 12:19 HITS.49263208._009792.pool.root.1
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc       529 Mar 31 12:19 boinc_task_state.xml
[2026-03-31 12:20:45] -rw------- 1 boinc boinc      1010 Mar 31 12:19 memory_monitor_summary.json
[2026-03-31 12:20:45] -rw------- 1 boinc boinc    249553 Mar 31 12:19 log.49263208._009792.job.log.tgz.1
[2026-03-31 12:20:45] -rw------- 1 boinc boinc      6315 Mar 31 12:19 heartbeat_new.json
[2026-03-31 12:20:45] -rw------- 1 boinc boinc      6206 Mar 31 12:19 heartbeat.json
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc        27 Mar 31 12:20 wrapper_checkpoint.txt
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc      8192 Mar 31 12:20 boinc_mmap_file
[2026-03-31 12:20:45] -rw------- 1 boinc boinc      5075 Mar 31 12:20 pilotlog.txt
[2026-03-31 12:20:45] -rw------- 1 boinc boinc    777277 Mar 31 12:20 log.49263208._009792.job.log.1
[2026-03-31 12:20:45] -rw------- 1 boinc boinc       357 Mar 31 12:20 output.list
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc       620 Mar 31 12:20 runtime_log
[2026-03-31 12:20:45] -rw------- 1 boinc boinc   1044480 Mar 31 12:20 result.tar.gz
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc      8911 Mar 31 12:20 runtime_log.err
[2026-03-31 12:20:45] -rw------- 1 boinc boinc       662 Mar 31 12:20 At3NDmZCXR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmpfOKDmAtRGom.diag
[2026-03-31 12:20:45] -rw-r--r-- 1 boinc boinc     11757 Mar 31 12:20 stderr.txt
[2026-03-31 12:20:45] HITS file was successfully produced:
[2026-03-31 12:20:45] -rw------- 1 boinc boinc 200035328 Mar 31 12:19 shared/HITS.pool.root.1
[2026-03-31 12:20:45]  *** Contents of shared directory: ***
[2026-03-31 12:20:45] total 417720
[2026-03-31 12:20:45] -rw-r--r-- 2 boinc boinc 225984686 Mar 31 10:02 ATLAS.root_0
[2026-03-31 12:20:45] -rw-r--r-- 2 boinc boinc    656756 Mar 31 10:02 input.tar.gz
[2026-03-31 12:20:45] -rw-r--r-- 2 boinc boinc     15845 Mar 31 10:02 start_atlas.sh
[2026-03-31 12:20:45] -rw------- 1 boinc boinc 200035328 Mar 31 12:19 HITS.pool.root.1
[2026-03-31 12:20:45] -rw------- 1 boinc boinc   1044480 Mar 31 12:20 result.tar.gz
12:20:47 (3613788): run_atlas exited; CPU time 15864.589241
12:20:47 (3613788): called boinc_finish(0)

</stderr_txt>
]]>

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