Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:48:24 (3600111): wrapper (7.7.26015): starting
07:48:24 (3600111): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 07:48:24] Arguments: --nthreads 2
[2026-03-31 07:48:24] Threads: 2
[2026-03-31 07:48:24] Checking for CVMFS
[2026-03-31 07:48:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 07:48:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 07:48:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 07:48:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 07:48:25] 2.9.2.0 3201293 4925 58704 157909 0 50 19506190 36864000 0 130560 0 1579640 99.979 181801 16020 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 07:48:25] CVMFS is ok
[2026-03-31 07:48:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 07:48:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 07:48:25] Further information can be found at the LHC@home message board.
[2026-03-31 07:48:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 07:48:25] Checking for apptainer binary...
[2026-03-31 07:48:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 07:48:25] Running /usr/bin/apptainer --version
[2026-03-31 07:48:25] apptainer version 1.4.1-1.1
[2026-03-31 07:48:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 07:48:25] magicA244
[2026-03-31 07:48:25] apptainer works
[2026-03-31 07:48:25] Set ATHENA_PROC_NUMBER=2
[2026-03-31 07:48:25] Set ATHENA_CORE_NUMBER=2
[2026-03-31 07:48:25] Starting ATLAS job with PandaID=7074440143
[2026-03-31 07:48:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 10:01:52]  *** The last 200 lines of the pilot log: ***
[2026-03-31 10:01:52] 2026-03-31 08:00:51,796 | INFO     | zombie collector waiting for pid 3608550
[2026-03-31 10:01:52] 2026-03-31 08:00:51,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 10:01:52] 2026-03-31 08:00:51,796 | INFO     | collected zombie processes
[2026-03-31 10:01:52] 2026-03-31 08:00:51,796 | INFO     | will attempt to kill all subprocesses of pid=3608550
[2026-03-31 10:01:52] 2026-03-31 08:00:51,823 | INFO     | process IDs to be killed: [3608550] (in reverse order)
[2026-03-31 10:01:52] 2026-03-31 08:00:51,844 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 10:01:52] 2026-03-31 08:00:51,844 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 10:01:52] 2026-03-31 08:00:51,845 | INFO     | did not find any defunct processes belonging to 3608550
[2026-03-31 10:01:52] 2026-03-31 08:00:51,845 | INFO     | did not find any defunct processes belonging to 3608550
[2026-03-31 10:01:52] 2026-03-31 08:00:51,845 | INFO     | Ready for new job
[2026-03-31 10:01:52] 2026-03-31 08:00:51,846 | INFO     | **************************************
[2026-03-31 10:01:52] 2026-03-31 08:00:51,846 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 10:01:52] 2026-03-31 08:00:51,846 | INFO     | **************************************
[2026-03-31 10:01:52] 2026-03-31 08:00:51,846 | INFO     | 
[2026-03-31 10:01:52] 2026-03-31 08:00:51,846 | INFO     | architecture information:
[2026-03-31 10:01:52] 2026-03-31 08:00:51,846 | INFO     | executing command: cat /etc/os-release
[2026-03-31 10:01:52] 2026-03-31 08:00:51,857 | INFO     | cat /etc/os-release:
[2026-03-31 10:01:52] NAME="CentOS Linux"
[2026-03-31 10:01:52] VERSION="7 (Core)"
[2026-03-31 10:01:52] ID="centos"
[2026-03-31 10:01:52] ID_LIKE="rhel fedora"
[2026-03-31 10:01:52] VERSION_ID="7"
[2026-03-31 10:01:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 10:01:52] ANSI_COLOR="0;31"
[2026-03-31 10:01:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 10:01:52] HOME_URL="https://www.centos.org/"
[2026-03-31 10:01:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 10:01:52] 
[2026-03-31 10:01:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 10:01:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 10:01:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 10:01:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 10:01:52] 
[2026-03-31 10:01:52] 2026-03-31 08:00:51,857 | INFO     | **************************************
[2026-03-31 10:01:52] 2026-03-31 08:00:52,360 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | INFO     | sufficient remaining disk space (504772952064 B)
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | INFO     | update_server=False
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 10:01:52] 2026-03-31 08:00:52,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 10:01:52] 2026-03-31 08:00:52,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 10:01:52] 2026-03-31 08:00:52,372 | INFO     | aborting loop
[2026-03-31 10:01:52] 2026-03-31 08:00:52,698 | INFO     | all payload control threads have been joined
[2026-03-31 10:01:52] 2026-03-31 08:00:53,349 | INFO     | all data control threads have been joined
[2026-03-31 10:01:52] 2026-03-31 08:00:53,353 | INFO     | all job control threads have been joined
[2026-03-31 10:01:52] 2026-03-31 08:00:53,376 | INFO     | [job] retrieve thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,377 | INFO     | [job] queue monitor thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,377 | INFO     | [job] job monitor thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,430 | INFO     | [payload] validate_post thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,665 | INFO     | [job] validate thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,703 | INFO     | [payload] control thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 10:01:52] 2026-03-31 08:00:53,862 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,953 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:53,976 | INFO     | [data] copytool_in thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:54,354 | INFO     | [data] control thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:54,358 | INFO     | [job] control thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:54,397 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:54,497 | INFO     | [payload] failed_post thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:54,979 | INFO     | job.realtimelogging is not enabled
[2026-03-31 10:01:52] 2026-03-31 08:00:55,723 | INFO     | [data] copytool_out thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:55,984 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:00:56,377 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 10:01:52] 2026-03-31 08:01:22,662 | INFO     | PID=3604140 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 10:01:52] 2026-03-31 08:01:22,662 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 10:01:52] 2026-03-31 08:01:22,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 10:01:52] 2026-03-31 08:01:22,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 10:01:52] 2026-03-31 08:01:46,078 | INFO     | [monitor] cgroup control has ended
[2026-03-31 10:01:52] 2026-03-31 08:01:47,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140333249832768)>', '<ExcThread(monitor, started 140332461180672)>']
[2026-03-31 10:01:52] 2026-03-31 08:01:48,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 10:01:52] 2026-03-31 08:01:48,793 | INFO     | [monitor] control thread has ended
[2026-03-31 10:01:52] 2026-03-31 08:01:52,867 | INFO     | all workflow threads have been joined
[2026-03-31 10:01:52] 2026-03-31 08:01:52,867 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 10:01:52] 2026-03-31 08:01:52,867 | INFO     | traces error code: 0
[2026-03-31 10:01:52] 2026-03-31 08:01:52,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 10:01:52] 2026-03-31 08:01:52,913 [wrapper] ==== pilot stdout END ====
[2026-03-31 10:01:52] 2026-03-31 08:01:52,916 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 10:01:52] 2026-03-31 08:01:52,918 [wrapper] pilotpid: 3604140
[2026-03-31 10:01:52] 2026-03-31 08:01:52,920 [wrapper] Pilot exit status: 0
[2026-03-31 10:01:52] 2026-03-31 08:01:52,928 [wrapper] pandaids: 7074440143
[2026-03-31 10:01:52] 2026-03-31 08:01:52,943 [wrapper] cleanup supervisor_pilot 3613571 3604141
[2026-03-31 10:01:52] 2026-03-31 08:01:52,945 [wrapper] Test setup, not cleaning
[2026-03-31 10:01:52] 2026-03-31 08:01:52,947 [wrapper] apfmon messages muted
[2026-03-31 10:01:52] 2026-03-31 08:01:52,950 [wrapper] ==== wrapper stdout END ====
[2026-03-31 10:01:52] 2026-03-31 08:01:52,952 [wrapper] ==== wrapper stderr END ====
[2026-03-31 10:01:52]  *** Error codes and diagnostics ***
[2026-03-31 10:01:52]     "exeErrorCode": 0,
[2026-03-31 10:01:52]     "pilotErrorCode": 0,
[2026-03-31 10:01:52]  *** Listing of results directory ***
[2026-03-31 10:01:52] total 434988
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc    644034 Mar 30 21:08 pilot3.tar.gz
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc      5118 Mar 30 21:10 queuedata.json
[2026-03-31 10:01:52] -rwx------ 1 boinc boinc     36322 Mar 30 21:11 runpilot2-wrapper.sh
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc       100 Mar 31 07:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 10:01:52] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 07:48 run_atlas
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc       105 Mar 31 07:48 job.xml
[2026-03-31 10:01:52] -rw-r--r-- 2 boinc boinc 261254400 Mar 31 07:48 EVNT.49474788._000001.pool.root.1
[2026-03-31 10:01:52] -rw-r--r-- 2 boinc boinc    656747 Mar 31 07:48 input.tar.gz
[2026-03-31 10:01:52] -rw-r--r-- 2 boinc boinc     15845 Mar 31 07:48 start_atlas.sh
[2026-03-31 10:01:52] drwxrwx--x 2 boinc boinc      4096 Mar 31 07:48 shared
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc         0 Mar 31 07:48 boinc_setup_complete
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc      6208 Mar 31 07:48 init_data.xml
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc         0 Mar 31 07:48 boinc_lockfile
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc      2568 Mar 31 07:48 pandaJob.out
[2026-03-31 10:01:52] -rw------- 1 boinc boinc   1003268 Mar 31 07:48 agis_schedconf.cvmfs.json
[2026-03-31 10:01:52] -rw------- 1 boinc boinc   1511579 Mar 31 07:48 agis_ddmendpoints.agis.ALL.json
[2026-03-31 10:01:52] -rw------- 1 boinc boinc       421 Mar 31 07:48 workernode_map.json
[2026-03-31 10:01:52] drwx------ 5 boinc boinc      4096 Mar 31 07:48 pilot3
[2026-03-31 10:01:52] -rw------- 1 boinc boinc 178103939 Mar 31 10:00 HITS.49499824._000023.pool.root.1
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc       529 Mar 31 10:00 boinc_task_state.xml
[2026-03-31 10:01:52] -rw------- 1 boinc boinc      1017 Mar 31 10:00 memory_monitor_summary.json
[2026-03-31 10:01:52] -rw------- 1 boinc boinc    254393 Mar 31 10:00 log.49499824._000023.job.log.tgz.1
[2026-03-31 10:01:52] -rw------- 1 boinc boinc      6311 Mar 31 10:00 heartbeat_new.json
[2026-03-31 10:01:52] -rw------- 1 boinc boinc      6202 Mar 31 10:00 heartbeat.json
[2026-03-31 10:01:52] -rw------- 1 boinc boinc        95 Mar 31 10:01 pilot_heartbeat.json
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc        27 Mar 31 10:01 wrapper_checkpoint.txt
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc      8192 Mar 31 10:01 boinc_mmap_file
[2026-03-31 10:01:52] -rw------- 1 boinc boinc      4819 Mar 31 10:01 pilotlog.txt
[2026-03-31 10:01:52] -rw------- 1 boinc boinc    753727 Mar 31 10:01 log.49499824._000023.job.log.1
[2026-03-31 10:01:52] -rw------- 1 boinc boinc       357 Mar 31 10:01 output.list
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc       620 Mar 31 10:01 runtime_log
[2026-03-31 10:01:52] -rw------- 1 boinc boinc   1024000 Mar 31 10:01 result.tar.gz
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc      8911 Mar 31 10:01 runtime_log.err
[2026-03-31 10:01:52] -rw------- 1 boinc boinc       662 Mar 31 10:01 Y6jMDmNCXR9n9Rq4apOajLDm4fhM0noT9bVoINGKDmCfQKDmvoZ0Bn.diag
[2026-03-31 10:01:52] -rw-r--r-- 1 boinc boinc     10392 Mar 31 10:01 stderr.txt
[2026-03-31 10:01:52] HITS file was successfully produced:
[2026-03-31 10:01:52] -rw------- 1 boinc boinc 178103939 Mar 31 10:00 shared/HITS.pool.root.1
[2026-03-31 10:01:52]  *** Contents of shared directory: ***
[2026-03-31 10:01:52] total 430732
[2026-03-31 10:01:52] -rw-r--r-- 2 boinc boinc 261254400 Mar 31 07:48 ATLAS.root_0
[2026-03-31 10:01:52] -rw-r--r-- 2 boinc boinc    656747 Mar 31 07:48 input.tar.gz
[2026-03-31 10:01:52] -rw-r--r-- 2 boinc boinc     15845 Mar 31 07:48 start_atlas.sh
[2026-03-31 10:01:52] -rw------- 1 boinc boinc 178103939 Mar 31 10:00 HITS.pool.root.1
[2026-03-31 10:01:52] -rw------- 1 boinc boinc   1024000 Mar 31 10:01 result.tar.gz
10:01:54 (3600111): run_atlas exited; CPU time 15229.426629
10:01:54 (3600111): called boinc_finish(0)

</stderr_txt>
]]>

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